mRNA_Ecto-sp13_S_contig1727.5137.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1727.5137.1
Unique NamemRNA_Ecto-sp13_S_contig1727.5137.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1727.5137.1 vs. uniprot
Match: A0A6H5KTF5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF5_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 6.110e-79
Identity = 191/226 (84.51%), Postives = 196/226 (86.73%), Query Frame = 1 
Query:   67 MVFLYKALAAGSCSVCLTSAFVASPPAPPAVAAVRGCSSRRDSSSFRRVRHRHSSDRRAEASLPPLLLSSRTVDVDVIXXXXXXXXXXXXXXXXXXXXDRIGRRYKGRPAAEVAKDVRELLDEALKIFRDAGPQVVGARGFRASRAVLLTLTDVVRDWRGGKLLRPKSEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALSGQELDPAGAARALRLLFERV 744
            M FLYKALAAGSCSVCL SAFVA+PPAPPAVA VRGCSSRRDSSS RRVR RHSS  R    +PPLLLSSRTVDVDVIXXXXXXXXXXXXXXXXXXXX  IGRRYKGRPAAEVAKDVR+LLDEALKIFRDAGPQVVGARGFRASRAVLLTLTD+VRDWR GKLLRPK E G XXXXXXXXXXXXXXXXXX             ALSGQELDPAGAARALRLLFER+
Sbjct:    1 MGFLYKALAAGSCSVCLASAFVATPPAPPAVAVVRGCSSRRDSSSCRRVRPRHSSGSRTAYRVPPLLLSSRTVDVDVIXXXXXXXXXXXXXXXXXXXXXXIGRRYKGRPAAEVAKDVRDLLDEALKIFRDAGPQVVGARGFRASRAVLLTLTDLVRDWREGKLLRPKRENGGXXXXXXXXXXXXXXXXXX-------------ALSGQELDPAGAARALRLLFERL 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1727.5137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTF5_9PHAE6.110e-7984.51Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1727contigEcto-sp13_S_contig1727:1397..3661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size745
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_004740.1
Cds size744
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462902.1720352-CDS-Ecto-sp13_S_contig1727:1396..16401681462902.1720352-CDS-Ecto-sp13_S_contig1727:1396..1640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 1397..1640 -
1681462902.1834316-CDS-Ecto-sp13_S_contig1727:2465..26171681462902.1834316-CDS-Ecto-sp13_S_contig1727:2465..2617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 2466..2617 -
1681462902.191485-CDS-Ecto-sp13_S_contig1727:3313..36611681462902.191485-CDS-Ecto-sp13_S_contig1727:3313..3661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1727 3314..3661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1727.5137.1prot_Ecto-sp13_S_contig1727.5137.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1727 1397..3661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1727.5137.1

>prot_Ecto-sp13_S_contig1727.5137.1 ID=prot_Ecto-sp13_S_contig1727.5137.1|Name=mRNA_Ecto-sp13_S_contig1727.5137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp
DSTTLSDRSASLCLDYSTSTGTMVFLYKALAAGSCSVCLTSAFVASPPAP
PAVAAVRGCSSRRDSSSFRRVRHRHSSDRRAEASLPPLLLSSRTVDVDVI
DVTDVTEEEARREKEQQERNDRIGRRYKGRPAAEVAKDVRELLDEALKIF
RDAGPQVVGARGFRASRAVLLTLTDVVRDWRGGKLLRPKSEGGGGNAATA
PSPAAPPAAGPAAGAGGGVAAAAAAALSGQELDPAGAARALRLLFERV
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mRNA from alignment at Ecto-sp13_S_contig1727:1397..3661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1727.5137.1 ID=mRNA_Ecto-sp13_S_contig1727.5137.1|Name=mRNA_Ecto-sp13_S_contig1727.5137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2265bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1727:1397..3661- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCACAACTCTCTCTGACCGCTCGGCGTCGCTGTGCCTTGACTACAG
CACAAGTACTGGTACCATGGTATTTCTATACAAGGCTCTTGCCGCGGGTT
CTTGCTCCGTCTGCCTTACTTCGGCGTTCGTTGCAAGCCCTCCTGCTCCT
CCCGCTGTAGCAGCAGTCAGAGGATGCAGCAGCCGCCGTGACTCATCATC
TTTCCGTCGAGTCAGGCACCGACACAGCAGTGACAGAAGAGCCGAGGCCA
GCCTACCGCCATTGCTTCTCTCTTCTCGTACAGTCGACGTCGACGTAATC
GATGTCACTGACGTCACGGAGGAAGAGGCACGTCGGGAAAAGGAACAGGT
GACATGCTGTCCACGACAAACACAAACATTACCGGCTGCGGTGGGATAGA
TGACTTGTTGTCTTCCCTCGTCGGGATATGTGTTGCGGCAGAGGTTTAGT
CTAGACCCCGCGTACAGCGAGGGCGAGGCGACGCCCCTTTTGCAAACGAC
AAAGTCCGAGGGATGCGCCTCGGCTATTCTAGGCAACAATTTGTCAATCG
CTAGATACTTCAGCTGACTTCTCCTATCTGTTACCGTTGTAGTGGTGCGT
TGCGTACACATGGCATCGTTGAACGCGTATCACATGAGCGAACACATGCG
TGGAGCTGGTGGACACTACAGTGTGGTTGCGTGGGGAGCCCCCGCATGAG
GTCCAATGCCCGTGCTGTGAGGTTCAACGAAATCGCGAAGGAGTCGAAGC
AAAGTGTGTAATTTTTTGGCCGGAATAGATGGGCCTTGATTTGTATCCAA
GTCTACAACCTCGGTCGCCGTCTGCTCCTGTCCCTGTCGGACACGATCAG
ACTCAAATGGCGCAATCAATCACGAAATGACTTGCGTGATTTTCCTTACT
GCTGTACACTCCTCCTTTCGGCATTGCCACCATCTCCCGCGGCATTGATT
GTTGTGCGATTGCGACGACTACGACCACAACAACAACACAAACACAACAA
CAACAACAACAACAACAACAACAACAAAAACAACACAATACCAGCAAGAG
AGGAACGACAGGATCGGCAGACGCTACAAGGGCCGGCCGGCCGCGGAGGT
TGCCAAGGACGTGCGGGAGCTGCTCGACGAGGCCCTCAAGATATTCCGAG
ATGCCGGCCCGCAGGTTGTAGGCGCCCGTGGGTTCAGGGCCAGCCGGTGA
GTGTCACCTCTTTGGTTTGTGTACAGGCCCGATACATGTAAGTAGTGGCA
TGTAGGGCCAAGAGGAGAATGTTCCACAAGTCAGGGCAGTGCCACTATTA
GATACATCAGGTTCATGTACAGGTTAAGATTGTGACAAGAGATTTTGATG
CCACTTTAACGGCAGTTTCACCATTCGAGTTATCGGGCCACCTACTGTAC
ATGCAAGGAGACATCATCAGCAGTGGAAATGAGCTACTCCAGTATTTTGG
GTGTTTGTGCTCTCCTTTTGTGTATTGTACGTGTGCATTTGTATGGACAT
TCGTGAGAAACCTCGTGCGTGCAAGTTTGGTTGCATGCTTTGTTGTTTCT
GTTTTAGGAGACTTCTCGCGAGCTCGCCGCTTTGCGCCTTCTTCTGCCTG
CCTGCCTGCAGTCGACTGGACTGCTGAAAAGTTTGTTGGGTCCATGTTTT
GTTCCCCCCGACCGCGTTCGCTTTCGTCGTCTCGTGCACTCCCCCCCATT
GTGCACGCGTTCTTCTACAGCATAGCACACGCCGTCATCGCCTCCGTCCC
CCCTTCTTGACAGCGACCGCGCTAACTGGCTGACCAATGAATATGCGTTA
GTCTTGAAGAACGGGGGGAAAAAATGTTGTACGTGTGTGTGTTGTTCTTT
GTTATTCTTTCGAAGTAGCATCGAACGTCAGTCTCAAGTGTGGTGTGTGT
GTGTGTGCGTCCATGATCATCGCCGATCCCCAGGGCGCGTGTCAACCAAC
TTGTGCTTTTCGTCCCTGTGTCGGTGCATCGTTGCAACAAACATCACCCA
CGGCGTTGGCACAATTCTTAGGGCCGTCCTCTTAACCTTGACCGACGTCG
TGCGAGACTGGAGGGGGGGTAAGCTGCTTAGACCGAAGAGCGAAGGCGGA
GGCGGCAACGCGGCCACGGCGCCCTCGCCAGCAGCACCGCCGGCGGCGGG
GCCGGCGGCAGGGGCGGGCGGGGGAGTGGCGGCGGCGGCGGCGGCGGCCC
TTTCGGGGCAGGAGCTGGACCCCGCGGGGGCTGCGCGCGCGCTGCGCTTG
CTGTTCGAACGGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1727:1397..3661-

>mRNA_Ecto-sp13_S_contig1727.5137.1 ID=mRNA_Ecto-sp13_S_contig1727.5137.1|Name=mRNA_Ecto-sp13_S_contig1727.5137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1727:1397..3661- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCACAACTCTCTCTGACCGCTCGGCGTCGCTGTGCCTTGACTACAG
CACAAGTACTGGTACCATGGTATTTCTATACAAGGCTCTTGCCGCGGGTT
CTTGCTCCGTCTGCCTTACTTCGGCGTTCGTTGCAAGCCCTCCTGCTCCT
CCCGCTGTAGCAGCAGTCAGAGGATGCAGCAGCCGCCGTGACTCATCATC
TTTCCGTCGAGTCAGGCACCGACACAGCAGTGACAGAAGAGCCGAGGCCA
GCCTACCGCCATTGCTTCTCTCTTCTCGTACAGTCGACGTCGACGTAATC
GATGTCACTGACGTCACGGAGGAAGAGGCACGTCGGGAAAAGGAACAGCA
AGAGAGGAACGACAGGATCGGCAGACGCTACAAGGGCCGGCCGGCCGCGG
AGGTTGCCAAGGACGTGCGGGAGCTGCTCGACGAGGCCCTCAAGATATTC
CGAGATGCCGGCCCGCAGGTTGTAGGCGCCCGTGGGTTCAGGGCCAGCCG
GGCCGTCCTCTTAACCTTGACCGACGTCGTGCGAGACTGGAGGGGGGGTA
AGCTGCTTAGACCGAAGAGCGAAGGCGGAGGCGGCAACGCGGCCACGGCG
CCCTCGCCAGCAGCACCGCCGGCGGCGGGGCCGGCGGCAGGGGCGGGCGG
GGGAGTGGCGGCGGCGGCGGCGGCGGCCCTTTCGGGGCAGGAGCTGGACC
CCGCGGGGGCTGCGCGCGCGCTGCGCTTGCTGTTCGAACGGGTG
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