mRNA_Ecto-sp13_S_contig17242.5119.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17242.5119.1
Unique NamemRNA_Ecto-sp13_S_contig17242.5119.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: D8LD50_ECTSI (Asparagine-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD50_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 9.220e-40
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN
Sbjct:  443 SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 509
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A6H5JZI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.180e-39
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 1 
Query:    1 SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN
Sbjct: 1306 SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 1372
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A817PHN6_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817PHN6_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 1.110e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  669 KQICGTPSYIAPEVILRQGYGKPVDWWSMGIILYEFLVGITPFTGNTPDELFAN 722
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A817D1D6_9BILA (Non-specific serine/threonine protein kinase n=8 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817D1D6_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 1.120e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  749 KQICGTPSYIAPEVILRQGYGKPVDWWSMGIILYEFLVGITPFTGNTPDELFAN 802
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A821NXE2_9BILA (Hypothetical protein n=2 Tax=Rotaria TaxID=231623 RepID=A0A821NXE2_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.520e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  905 KQICGTPSYIAPEVILRQGYGKPVDWWSMGIILYEFLVGVPPFTGNTPDELFAN 958
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A814NLN8_ADIRI (Non-specific serine/threonine protein kinase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814NLN8_ADIRI)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  733 KQICGTPSYIAPEVILRQGYGKAVDWWSMGIILYEFLVGIPPFTGNTPDELFAN 786
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A816F4U2_9BILA (Non-specific serine/threonine protein kinase n=15 Tax=Rotaria TaxID=231623 RepID=A0A816F4U2_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  763 KQICGTPSYIAPEVILRQGYGKPVDWWSMGIILYEFLVGIPPFTGNTPDELFAN 816
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BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A817ZTB6_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A817ZTB6_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  905 KQICGTPSYIAPEVILRQGYGKPVDWWSMGIILYEFLVGVPPFTGNTPDELFAN 958
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A817WSP8_9BILA (Non-specific serine/threonine protein kinase n=6 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A817WSP8_9BILA)

HSP 1 Score: 73.2 bits (178), Expect = 1.530e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   40 KQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIFRN 201
            KQ+ GTPSY+APE IL   YGK VDW+S G +LY  L+G  PF GN+P E+F N
Sbjct:  905 KQICGTPSYIAPEVILRQGYGKPVDWWSMGIILYEFLVGVPPFTGNTPDELFAN 958
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Match: A0A0M3LPR3_9HYME (Protein kinase domain-containing protein (Fragment) n=2 Tax=Chalcidoidea TaxID=7422 RepID=A0A0M3LPR3_9HYME)

HSP 1 Score: 67.4 bits (163), Expect = 2.390e-13
Identity = 30/62 (48.39%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   10 VSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMMLMGRAPFAGNSPSEIF 195
            +   +R    KQ+ GTP Y+APE IL   YGK VDW+S G +LY  L+G  PF G +P E+F
Sbjct:    9 IEKDTRQFSDKQVFGTPEYIAPEVILRQGYGKPVDWWSMGIILYEFLIGCVPFFGETPEELF 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17242.5119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD50_ECTSI9.220e-40100.00Asparagine-rich protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZI2_9PHAE3.180e-39100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A817PHN6_9BILA1.110e-1359.26Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
A0A817D1D6_9BILA1.120e-1359.26Non-specific serine/threonine protein kinase n=8 T... [more]
A0A821NXE2_9BILA1.520e-1359.26Hypothetical protein n=2 Tax=Rotaria TaxID=231623 ... [more]
A0A814NLN8_ADIRI1.530e-1359.26Non-specific serine/threonine protein kinase n=2 T... [more]
A0A816F4U2_9BILA1.530e-1359.26Non-specific serine/threonine protein kinase n=15 ... [more]
A0A817ZTB6_9BILA1.530e-1359.26Hypothetical protein n=1 Tax=Rotaria sp. Silwood1 ... [more]
A0A817WSP8_9BILA1.530e-1359.26Non-specific serine/threonine protein kinase n=6 T... [more]
A0A0M3LPR3_9HYME2.390e-1348.39Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17242contigEcto-sp13_S_contig17242:1638..2770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score148.3
Seed ortholog evalue1.3e-33
Seed eggNOG ortholog2880.D8LD50
Model size203
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.17
Cds size201
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462900.8495357-CDS-Ecto-sp13_S_contig17242:1639..17241681462900.8495357-CDS-Ecto-sp13_S_contig17242:1639..1724Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17242 1640..1724 -
1681462900.8651664-CDS-Ecto-sp13_S_contig17242:2046..21171681462900.8651664-CDS-Ecto-sp13_S_contig17242:2046..2117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17242 2047..2117 -
1681462900.8747115-CDS-Ecto-sp13_S_contig17242:2725..27701681462900.8747115-CDS-Ecto-sp13_S_contig17242:2725..2770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17242 2726..2770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17242.5119.1prot_Ecto-sp13_S_contig17242.5119.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17242 1640..2770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17242.5119.1

>prot_Ecto-sp13_S_contig17242.5119.1 ID=prot_Ecto-sp13_S_contig17242.5119.1|Name=mRNA_Ecto-sp13_S_contig17242.5119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
SHQVSPKSRLACGKQLMGTPSYMAPESILHGMYGKEVDWFSCGCVLYMML
MGRAPFAGNSPSEIFRN
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mRNA from alignment at Ecto-sp13_S_contig17242:1638..2770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17242.5119.1 ID=mRNA_Ecto-sp13_S_contig17242.5119.1|Name=mRNA_Ecto-sp13_S_contig17242.5119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17242:1638..2770- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCACCAAGTCTCGCCCAAGTCGCGGCTCGCCTGCGGCAAGCAGGTTCG
TTTCTGATACCACCACGGTGCCTCTCTCTCTGTTTTGCTTTGAGGCCGTC
ACGCACTGCTGTCCCAGTTCCGAACGAGAGAGCGATAGATGTATGTAATG
CAATACCATGCAATCTTTCTTACCCGGTTGTGCAGAATTTGCCAAATGCT
CCAGAGCAAGGTAAATGTTTCTGTACGTTGTTGCATCGAAGGTTTGGCAG
GCAAACCAAGCTGTGTGCATGAGCAGAGTGATGTGGCCTGTCTGTTGATA
CAGGCCGGTCGTTCATCATCTTCGTTTCATTTTGACGGTCAGAGATTCTT
GTCCCCATAATGCTGCTGTCTGGACTGCTGCGTTTTATTCTTTATCCCTC
TTTGCGTTTTGTTGCATCTCGTTCTTCCTTGCTTCTTGTTGGAATGTCTG
GCGCGATACTGTATCCGTCCGTCCCACGTGGCCCCTCTCCTCTCTGTCAC
GTATACCCTACCCTCGCCAATCTTGTCCTCGTCGCATGCGTCTGGTCGGT
ACTGTTCTTGCCTTCTGGCGGGTTGTCTCCATCGCACCGCTCAACACCCG
ACTGGTCGATCGATCTGCCCGATGCGTTGGATGTGATGTGATCCATCTGC
CAGCTGATGGGCACTCCCTCGTACATGGCCCCCGAGTCAATTTTGCACGG
CATGTACGGCAAGGAGGTCGACTGGTGAGGGGCCTGGTACGGTAGACGCA
TAGATGCTGGCAGTGCAGCGCGTAGGTGAGCACAGCGGTGCCGTTCAAGA
AGAAAAGTCTGGATACATTTTCCACAAACAAAATGAAAATTGACCCAGCT
TCGGGTCGACACTTGTGTTTTTTTTTGTCGTTTCTCCTTCACCTGGTTGA
AGCCGTTACATCTCCACACAGCGCGCTTCTGTGCGTAGTTGGTCTCGTTA
CATCGCGCTGGTTTGCATAATCGGTCTCTCCTCACAATTTCACAACGCCT
GCTTATGTTCAATCACCTCGCCACGACGACACGCGCGTTCCTCCAGGTTC
TCCTGCGGCTGCGTGCTGTACATGATGCTCATGGGCCGGGCGCCTTTCGC
GGGCAACAGCCCTTCCGAGATCTTCCGCAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17242:1638..2770-

>mRNA_Ecto-sp13_S_contig17242.5119.1 ID=mRNA_Ecto-sp13_S_contig17242.5119.1|Name=mRNA_Ecto-sp13_S_contig17242.5119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17242:1638..2770- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCACCAAGTCTCGCCCAAGTCGCGGCTCGCCTGCGGCAAGCAGCTGAT
GGGCACTCCCTCGTACATGGCCCCCGAGTCAATTTTGCACGGCATGTACG
GCAAGGAGGTCGACTGGTTCTCCTGCGGCTGCGTGCTGTACATGATGCTC
ATGGGCCGGGCGCCTTTCGCGGGCAACAGCCCTTCCGAGATCTTCCGCAA
C
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