mRNA_Ecto-sp13_S_contig17207.5103.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17207.5103.1
Unique NamemRNA_Ecto-sp13_S_contig17207.5103.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: A0A6H5J7K1_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K1_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 1.820e-96
Identity = 154/186 (82.80%), Postives = 157/186 (84.41%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCPD------------------------SADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVDSSNA 486
            IAH+LRV+WGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVD CAPKM LVCPLVNKLRLASKL A ATGKSGWPDL YHCPD                        SADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIV+SSNA
Sbjct:   26 IAHLLRVEWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDDCAPKMALVCPLVNKLRLASKLRAVATGKSGWPDLTYHCPDVKEEKIATGGMSSSGVGWRSGGGRSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVNSSNA 211
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 2.360e-93
Identity = 156/186 (83.87%), Postives = 160/186 (86.02%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCPD------------------------SADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVDSSNA 486
            IAH+LRV+WGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLK+SLKKLQLIVDSCAPKMVLVCPLVNKLRLASKL A ATGKSGWPDLPYHCPD                        SADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIV+SSNA
Sbjct:  494 IAHLLRVEWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKRSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLRAVATGKSGWPDLPYHCPDVKEENIPTGGMSSATVGWRSGGGKSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVNSSNA 679
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: D7FH91_ECTSI (AMP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH91_ECTSI)

HSP 1 Score: 268 bits (686), Expect = 9.870e-85
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCPD--------------------------SADVKRT-----RPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVDSSNA 486
            IAH+LRV+WGL+KGDRVVLAF+FGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSL+ LQLIV+ C PKM+LVCPLVNKLRLA KL   ATGKSGWP+LPYHCPD                           A  KR      RPSFDDPTIKP+DVAFLQFTSGSTSDPKGVMLTYGNLTHNI  I++SSNA
Sbjct:   70 IAHLLRVEWGLTKGDRVVLAFNFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLQNLQLIVEGCTPKMILVCPLVNKLRLAWKLRVVATGKSGWPNLPYHCPDVKEETIPTSGLAYTAVEWKSRGSKSTDAGTKRPSFQMQRPSFDDPTIKPEDVAFLQFTSGSTSDPKGVMLTYGNLTHNIDAIINSSNA 262
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: A0A6H5JSY1_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY1_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 3.920e-80
Identity = 138/193 (71.50%), Postives = 149/193 (77.20%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCPD--------------------------SADVKRT-----RPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVDSSNA 486
            IAH+LRV+WGL+KGDRVVLAF+FGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSL+KLQLIV+ C P M+LVCPLVNKLRLA KL A ATGK GWP+LPYHCPD                           A  KR      RPSFDDPTIKP+DVAFLQFTSGSTSDPKGVMLTYGNLTHNI  I++SSNA
Sbjct:   68 IAHLLRVEWGLTKGDRVVLAFNFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLQKLQLIVEGCTPNMILVCPLVNKLRLAWKLRAVATGKIGWPNLPYHCPDVKEETIPTSGLSYSAVEWKSRGSKSAEAGTKRPSFQMQRPSFDDPTIKPEDVAFLQFTSGSTSDPKGVMLTYGNLTHNIDAIINSSNA 260
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: D7G4W3_ECTSI (Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W3_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 1.190e-77
Identity = 135/182 (74.18%), Postives = 145/182 (79.67%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCPDSADVK--------------------RTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVDSSNA 486
            IAH+LRV+WGLSKGDRVVLAF+FGL FFAVFLGCLRAGI+AVPVYPPNPATLKKSL+KLQLIVDSC PKM+LVCPLVNKLRL+SKL A ATG S WP L YHC    DVK                      RPSFDDPTIKP DVAFLQFTSGSTSDPKGVMLTYGNLTHNI  I++SS+A
Sbjct:   32 IAHLLRVEWGLSKGDRVVLAFNFGLGFFAVFLGCLRAGILAVPVYPPNPATLKKSLQKLQLIVDSCTPKMILVCPLVNKLRLSSKLRAVATGNSDWPKLRYHC--CPDVKGETIAAAGWRGGGSKQMGPETKRPSFDDPTIKPGDVAFLQFTSGSTSDPKGVMLTYGNLTHNIACIINSSDA 211
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: A0A6H5KNL6_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL6_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 8.070e-75
Identity = 119/186 (63.98%), Postives = 138/186 (74.19%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCP-------------------------DSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIVDSSN 483
            IA++LR   GL+KGDRVVLAF+FGLRFF VFLGCLRAG++AVPVYPPNPATL+KSL KL LIV+SC PKM+ +CPLVNKLRLASK+ A ATG SGWPDLPYHCP                          +++    R SFDDP+IK  DVAFLQFTSGSTSDPKGVM+T+GNL HNI  ++ SSN
Sbjct:   54 IAYLLRSTLGLNKGDRVVLAFNFGLRFFVVFLGCLRAGVVAVPVYPPNPATLQKSLGKLSLIVESCEPKMIFLCPLVNKLRLASKVRAVATGNSGWPDLPYHCPMVKEETPSKANTSSSSSFRLLMGGGRTSNADERRKSFDDPSIKAADVAFLQFTSGSTSDPKGVMITFGNLDHNISSVLLSSN 239
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: A0A6H5L5M1_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M1_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.860e-54
Identity = 95/165 (57.58%), Postives = 115/165 (69.70%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPYHCPDSADVKRTR-------------PSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHN 456
            IAH LRV WGL KGDR +L + FGL FFA FLGCLRAG++AVPVYPP+P TL KSL KLQ IV++C PK++LV   VN+LRLASKL   ++ +  WPDLPY    S+ V                  SFD+ ++   DVAFLQFTSGSTS+PKGVM+T+GNL HN
Sbjct:   61 IAHELRVSWGLGKGDRAILCYGFGLDFFAAFLGCLRAGVLAVPVYPPSPLTLSKSLTKLQSIVEACDPKVILVSGDVNRLRLASKLNFVSSARRLWPDLPYKVARSSGVSSGGGISKWLGGAGGGGESFDEESLGEGDVAFLQFTSGSTSEPKGVMVTFGNLEHN 225
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: W7U9U8_9STRA (Polyketide synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9U8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.400e-40
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPD-LPYHCPDSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIV 471
            IA+ L  K+G+ KG+RV+L + FGL FF  FL CLR G++AVPVYPPNP  LK SL+KL+LIV S    + L    +N  R AS+L   ++ K  WP  L +   DS  +  T  S D+P + P D+AFLQ+TSGST DPKGVM+T+GNL HN+  ++
Sbjct:   35 IAYYLNTKYGIKKGERVILCYGFGLEFFVAFLACLRLGVVAVPVYPPNPTKLKMSLEKLELIVTSAGATLCLTDNTINWFRKASQLNVLSSAK--WPKGLKWDSTDSI-LAGTGTSCDEPGLHPNDIAFLQYTSGSTGDPKGVMITFGNLDHNVNDLI 189
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: A0A4D9CX67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX67_9STRA)

HSP 1 Score: 153 bits (386), Expect = 6.320e-40
Identity = 79/158 (50.00%), Postives = 105/158 (66.46%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPD-LPYHCPDSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIV 471
            IA+ L  K+G+ KG+RV+L + FGL FF  FL CLR G++AVPVYPPNP  LK SL+KL+LIV S    + L    +N  R AS+L   ++ K  WP  L +   DS  +  T  S D+P + P D+AFLQ+TSGST DPKGVM+T+GNL HN+  ++
Sbjct:   79 IAYHLNTKYGIKKGERVILCYGFGLEFFVAFLACLRLGVVAVPVYPPNPTKLKMSLEKLELIVTSAGATLCLTDNTINWFRKASQLNVLSSAK--WPKGLKWDSTDSI-LASTGTSCDEPGLHPNDIAFLQYTSGSTGDPKGVMITFGNLDHNVNDLI 233
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BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Match: D7G7J4_ECTSI (Carrier domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J4_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.440e-35
Identity = 65/101 (64.36%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLPY 303
            IAH LRV WGL KGDR +L + FGL FFA FLGCLRAG++AVPVYPP+P TL KSL KLQ IV++C PK++L+   VN LRLASKL   ++ +  WPDLPY
Sbjct:   52 IAHELRVSWGLGKGDRAILCYGFGLDFFAAFLGCLRAGVLAVPVYPPSPLTLSKSLTKLQGIVEACDPKVILISGDVNHLRLASKLNFVSSARRLWPDLPY 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17207.5103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7K1_9PHAE1.820e-9682.80AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7FRT1_ECTSI2.360e-9383.87Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
D7FH91_ECTSI9.870e-8571.50AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JSY1_9PHAE3.920e-8071.50Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4W3_ECTSI1.190e-7774.18Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KNL6_9PHAE8.070e-7563.98AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5L5M1_9PHAE1.860e-5457.58AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
W7U9U8_9STRA4.400e-4050.00Polyketide synthase n=1 Tax=Nannochloropsis gadita... [more]
A0A4D9CX67_9STRA6.320e-4050.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D7G7J4_ECTSI2.440e-3564.36Carrier domain-containing protein n=1 Tax=Ectocarp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17207contigEcto-sp13_S_contig17207:2737..3300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score303.9
Seed ortholog evalue4.5e-80
Seed eggNOG ortholog2880.D7FRT1
Model size492
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.fatty acid biosynthetic process
EggNOG OGsCOG0318@1,KOG3628@2759
Cds size492
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.7053852-CDS-Ecto-sp13_S_contig17207:2736..30511681462899.7053852-CDS-Ecto-sp13_S_contig17207:2736..3051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17207 2737..3051 +
1681462899.7186618-CDS-Ecto-sp13_S_contig17207:3123..33001681462899.7186618-CDS-Ecto-sp13_S_contig17207:3123..3300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17207 3124..3300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17207.5103.1prot_Ecto-sp13_S_contig17207.5103.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17207 2737..3300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17207.5103.1

>prot_Ecto-sp13_S_contig17207.5103.1 ID=prot_Ecto-sp13_S_contig17207.5103.1|Name=mRNA_Ecto-sp13_S_contig17207.5103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
IAHILRVKWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPA
TLKKSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLWAAATGKSGWPDLP
YHCPDSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLT
HNIGVIVDSSNAVR
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mRNA from alignment at Ecto-sp13_S_contig17207:2737..3300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17207.5103.1 ID=mRNA_Ecto-sp13_S_contig17207.5103.1|Name=mRNA_Ecto-sp13_S_contig17207.5103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17207:2737..3300+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGCGCACATCCTTCGAGTGAAGTGGGGCCTGAGCAAGGGCGACCGAGT
GGTGCTGGCGTTCGATTTCGGCCTGCGCTTCTTCGCGGTCTTCCTCGGCT
GCCTGAGAGCCGGCATCATCGCCGTGCCGGTGTACCCGCCCAACCCGGCC
ACGCTCAAGAAGTCTCTCAAGAAGCTGCAGCTCATCGTCGACAGCTGTGC
ACCCAAGATGGTCCTCGTGTGCCCGCTCGTCAACAAGCTCCGCCTCGCGT
CGAAGCTGTGGGCGGCGGCGACGGGGAAAAGCGGCTGGCCGGACTTGCCA
TACCACTGCCCCGACGTCAAAGAGGAGAAGATCGCCACCGGTGGCATGTC
TTCTGCTACCGATGGGTGGAGAAGTGGTGGTGGCAAGTCGGCGGACGTCA
AAAGGACGCGGCCGAGCTTCGACGACCCGACCATCAAGCCGCAAGACGTG
GCCTTCCTGCAGTTCACCTCAGGGAGCACCTCGGATCCGAAGGGGGTCAT
GCTCACGTACGGCAACCTCACCCACAACATTGGAGTCATCGTCGACTCCT
CGAACGCGGTGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17207:2737..3300+

>mRNA_Ecto-sp13_S_contig17207.5103.1 ID=mRNA_Ecto-sp13_S_contig17207.5103.1|Name=mRNA_Ecto-sp13_S_contig17207.5103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17207:2737..3300+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGCGCACATCCTTCGAGTGAAGTGGGGCCTGAGCAAGGGCGACCGAGT
GGTGCTGGCGTTCGATTTCGGCCTGCGCTTCTTCGCGGTCTTCCTCGGCT
GCCTGAGAGCCGGCATCATCGCCGTGCCGGTGTACCCGCCCAACCCGGCC
ACGCTCAAGAAGTCTCTCAAGAAGCTGCAGCTCATCGTCGACAGCTGTGC
ACCCAAGATGGTCCTCGTGTGCCCGCTCGTCAACAAGCTCCGCCTCGCGT
CGAAGCTGTGGGCGGCGGCGACGGGGAAAAGCGGCTGGCCGGACTTGCCA
TACCACTGCCCCGACTCGGCGGACGTCAAAAGGACGCGGCCGAGCTTCGA
CGACCCGACCATCAAGCCGCAAGACGTGGCCTTCCTGCAGTTCACCTCAG
GGAGCACCTCGGATCCGAAGGGGGTCATGCTCACGTACGGCAACCTCACC
CACAACATTGGAGTCATCGTCGACTCCTCGAACGCGGTGAGA
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