mRNA_Ecto-sp13_S_contig17200.5100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17200.5100.1
Unique NamemRNA_Ecto-sp13_S_contig17200.5100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A7S3GWQ3_9STRA (Diphthine--ammonia ligase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GWQ3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.910e-24
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAAS-DEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MKFVAL+SGGKDSC+N ++CV +GHEL+CL NL PPA+   +E DSFMYQ+A HTAI   +ECF  PLIR+
Sbjct:    1 MKFVALLSGGKDSCFNVIKCVEHGHELICLANLSPPASFDGEEMDSFMYQTAGHTAISKLSECFEVPLIRK 71
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BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A875RUR1_EENNA (Diphthine--ammonia ligase n=1 Tax=Eeniella nana TaxID=13502 RepID=A0A875RUR1_EENNA)

HSP 1 Score: 103 bits (256), Expect = 4.920e-23
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPL 381
            MKFVAL+SGGKDSC+N + C+  GHEL+CL NLYPP + SDE DSFMYQ+  + A+K  AEC GKPL
Sbjct:    1 MKFVALVSGGKDSCFNILHCLANGHELICLANLYPPPSGSDEIDSFMYQTVGYDALKYYAECIGKPL 67
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BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A2P2KEG6_RHIMU (Diphthine--ammonia ligase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KEG6_RHIMU)

HSP 1 Score: 92.8 bits (229), Expect = 2.800e-22
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MK VAL+SGGKDSCY  M+CVRYGHE+V L NL P     DE DS+MYQ+  H  I   AEC G PL RR
Sbjct:    1 MKVVALVSGGKDSCYAMMKCVRYGHEIVALANLMPADDLVDELDSYMYQTVGHQIIVGYAECMGLPLFRR 70
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BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A1E4T9X7_9ASCO (Diphthine--ammonia ligase (Fragment) n=1 Tax=Tortispora caseinolytica NRRL Y-17796 TaxID=767744 RepID=A0A1E4T9X7_9ASCO)

HSP 1 Score: 98.2 bits (243), Expect = 1.480e-21
Identity = 47/70 (67.14%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MKFVALISGGKDSCYN MECVR GHELV + NL+PP    DE +S+MYQ+  H AI   AECF  PL RR
Sbjct:    3 MKFVALISGGKDSCYNVMECVRLGHELVAIANLHPPVG--DELNSYMYQTVGHDAIPYLAECFDVPLYRR 70
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BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: W1QI05_OGAPD (Diphthine--ammonia ligase n=2 Tax=Ogataea TaxID=461281 RepID=W1QI05_OGAPD)

HSP 1 Score: 99.0 bits (245), Expect = 1.490e-21
Identity = 45/70 (64.29%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MKFVALISGGKDSCYN + C+  GHELVCL NLYPP + S E DSFMYQ+     +   A+C GKPL RR
Sbjct:    1 MKFVALISGGKDSCYNILHCMANGHELVCLANLYPPPSDSHELDSFMYQTVGFDIVPYYADCTGKPLYRR 70
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BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A6A4N2B0_LUPAL (Diphthine--ammonia ligase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4N2B0_LUPAL)

HSP 1 Score: 90.9 bits (224), Expect = 1.560e-21
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MK VAL+SGGKDSCY  M+C++YGHE+V L NL P   + DE DS+MYQ+  H  + + AEC G PL RR
Sbjct:    1 MKAVALVSGGKDSCYAMMKCIQYGHEIVALANLMPVDDSVDELDSYMYQTVGHQIVVSYAECMGLPLFRR 70
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A068TVK5_COFCA (Diphthine--ammonia ligase n=1 Tax=Coffea canephora TaxID=49390 RepID=A0A068TVK5_COFCA)

HSP 1 Score: 90.5 bits (223), Expect = 2.210e-21
Identity = 40/70 (57.14%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MK VAL+SGGKDSCY  M+C+ YGHE+V L NL P   A DE DS+MYQ+  H  + + A+C G PL RR
Sbjct:    1 MKVVALVSGGKDSCYAMMKCLAYGHEIVALANLLPSDDAEDELDSYMYQTVGHQIVVSYAKCMGLPLFRR 70
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: F6H603_VITVI (Diphthine--ammonia ligase n=3 Tax=Vitis TaxID=3603 RepID=F6H603_VITVI)

HSP 1 Score: 90.1 bits (222), Expect = 2.890e-21
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MK VAL+SGGKDSCY  M+C++YGHE+V L NL P   + DE DS+MYQ+  H  + + A+C G PL RR
Sbjct:    1 MKVVALVSGGKDSCYAMMKCIQYGHEIVALANLLPADDSVDELDSYMYQTVGHQIVVSYAKCMGVPLFRR 70
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A1E4T8X0_9ASCO (Diphthine--ammonia ligase (Fragment) n=1 Tax=[Candida] arabinofermentans NRRL YB-2248 TaxID=983967 RepID=A0A1E4T8X0_9ASCO)

HSP 1 Score: 97.8 bits (242), Expect = 3.510e-21
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIRR 390
            MKFVAL+SGGKDSC+N + C   GHEL+CL NLYPP + SDE DSFMYQ+  H  +    +C GKP+ R+
Sbjct:    1 MKFVALVSGGKDSCFNILHCQANGHELICLANLYPPPSDSDELDSFMYQTVGHDILAYYEQCIGKPMYRQ 70
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Match: A0A1E3NP39_9ASCO (Diphthine--ammonia ligase n=1 Tax=Pichia membranifaciens NRRL Y-2026 TaxID=763406 RepID=A0A1E3NP39_9ASCO)

HSP 1 Score: 97.4 bits (241), Expect = 5.340e-21
Identity = 39/69 (56.52%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:  181 MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQSAAHTAIKAQAECFGKPLIR 387
            MKFVAL+SGGKDSC+N + C+  GHEL+CL NLYPP++ +DE DS+MYQ+  H  +    +C GKP+ R
Sbjct:    1 MKFVALVSGGKDSCFNILHCLAQGHELICLANLYPPSSENDELDSYMYQTVGHDVLTLYEKCTGKPMYR 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17200.5100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3GWQ3_9STRA2.910e-2464.79Diphthine--ammonia ligase n=1 Tax=Spumella elongat... [more]
A0A875RUR1_EENNA4.920e-2365.67Diphthine--ammonia ligase n=1 Tax=Eeniella nana Ta... [more]
A0A2P2KEG6_RHIMU2.800e-2261.43Diphthine--ammonia ligase n=1 Tax=Rhizophora mucro... [more]
A0A1E4T9X7_9ASCO1.480e-2167.14Diphthine--ammonia ligase (Fragment) n=1 Tax=Torti... [more]
W1QI05_OGAPD1.490e-2164.29Diphthine--ammonia ligase n=2 Tax=Ogataea TaxID=46... [more]
A0A6A4N2B0_LUPAL1.560e-2157.14Diphthine--ammonia ligase n=1 Tax=Lupinus albus Ta... [more]
A0A068TVK5_COFCA2.210e-2157.14Diphthine--ammonia ligase n=1 Tax=Coffea canephora... [more]
F6H603_VITVI2.890e-2155.71Diphthine--ammonia ligase n=3 Tax=Vitis TaxID=3603... [more]
A0A1E4T8X0_9ASCO3.510e-2158.57Diphthine--ammonia ligase (Fragment) n=1 Tax=[Cand... [more]
A0A1E3NP39_9ASCO5.340e-2156.52Diphthine--ammonia ligase n=1 Tax=Pichia membranif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17200contigEcto-sp13_S_contig17200:1148..2044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score99.8
Seed ortholog evalue5.6e-19
Seed eggNOG ortholog1005962.W1QI05
Model size393
KEGG rclassRC00358
KEGG koko:K06927
KEGG ReactionR03613
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016874,GO:0016879,GO:0016880,GO:0017178,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1900247,GO:1901564,GO:2000112,GO:2000765
Exons2
EggNOG free text desc.Saccharomyces cerevisiae YLR143w
EggNOG OGs38B78@33154,3NVBK@4751,3QKGQ@4890,3RR0Y@4891,COG0251@1,COG2102@1,KOG2316@2759,KOG2317@2759
Ec32 ortholog descriptionRossmann-like alpha/beta/alpha sandwich fold
Ec32 orthologEc-05_005040.1
EC6.3.1.14
Cds size213
COG Functional cat.J
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03012
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.525791-UTR-Ecto-sp13_S_contig17200:1147..13271681462899.525791-UTR-Ecto-sp13_S_contig17200:1147..1327Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17200 1148..1327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.5371702-CDS-Ecto-sp13_S_contig17200:1327..13841681462899.5371702-CDS-Ecto-sp13_S_contig17200:1327..1384Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17200 1328..1384 +
1681462899.5453198-CDS-Ecto-sp13_S_contig17200:1888..20441681462899.5453198-CDS-Ecto-sp13_S_contig17200:1888..2044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17200 1889..2044 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17200.5100.1prot_Ecto-sp13_S_contig17200.5100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17200 1328..2044 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17200.5100.1

>prot_Ecto-sp13_S_contig17200.5100.1 ID=prot_Ecto-sp13_S_contig17200.5100.1|Name=mRNA_Ecto-sp13_S_contig17200.5100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MKFVALISGGKDSCYNTMECVRYGHELVCLGNLYPPAAASDEADSFMYQS
AAHTAIKAQAECFGKPLIRR*
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mRNA from alignment at Ecto-sp13_S_contig17200:1148..2044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17200.5100.1 ID=mRNA_Ecto-sp13_S_contig17200.5100.1|Name=mRNA_Ecto-sp13_S_contig17200.5100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17200:1148..2044+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGAGACGCCGTTTGGCGTGTTGCAAGCCATCGAGGTGTCCTGGACCA
CACGCAGCAGCAGCAGCAGTAGCAGCAGCGGCAACTCTGTGGCGGATACC
TAAGGGCTTCTCTCTCGTAGCCACACGGAGGGTGTTTTACCCTCTTGTGG
TAGTTCGATCAAGGTAGAGGAGCTTCTACGATGAAGTTCGTGGCGCTCAT
CAGCGGGGGGAAAGATAGCTGCTACAACACCATGGAGGTAATGAGACAGA
CGTTGCGGCTGGGATCAATGGTACCCTACACAGAAGTCCAGCACTAGGTG
CCCGTTGTTGCGGGCGCGCGCTGTTTGTCGGCCAGGCTAGTCCTGATAAC
GACATGCATTTCTGTGTGCGAGGTGGGGGTGTGGCCATCGATCGGGCCCG
GCTAACTTCGTGGATTGGGAAGAAATATCGCAGTACTGGTGTAAATGGCT
CTATGTACGGTATCGTCCTCCGTTCTTGCAATACTTCTGTAGGTCATGGC
CGAAGAGGCGGCTGCAGGTGCACTTAGTAGGCAAGGCGCGGCGGCGAAAA
TATGGGACCAAGACGAATGTAAAGCACACGGTTTGTAGTCTTGTTTGCTT
CTTCCCGCGTGGACAAGGGGATATAATTAAGTGTAAATAGTCACGAGTGA
TTCGGACTTCTCCTAATCTCGACCTTGTTCATACCGGCATCCTCCCCGCC
CCCCTTCTTGGTTGCTCTGGCCGCGCGCGCCGCGCGGGAAGTGTGTTCGC
TATGGCCACGAACTGGTTTGCCTAGGGAACCTGTACCCACCGGCAGCAGC
ATCGGACGAGGCAGACAGCTTCATGTATCAGTCGGCGGCTCACACCGCAA
TAAAGGCGCAGGCAGAGTGCTTCGGGAAGCCCCTCATTCGTAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17200:1148..2044+

>mRNA_Ecto-sp13_S_contig17200.5100.1 ID=mRNA_Ecto-sp13_S_contig17200.5100.1|Name=mRNA_Ecto-sp13_S_contig17200.5100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17200:1148..2044+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTTCGTGGCGCTCATCAGCGGGGGGAAAGATAGCTGCTACAACAC
CATGGAGTGTGTTCGCTATGGCCACGAACTGGTTTGCCTAGGGAACCTGT
ACCCACCGGCAGCAGCATCGGACGAGGCAGACAGCTTCATGTATCAGTCG
GCGGCTCACACCGCAATAAAGGCGCAGGCAGAGTGCTTCGGGAAGCCCCT
CATTCGTAGGTAA
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