mRNA_Ecto-sp13_S_contig17193.5097.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17193.5097.1
Unique NamemRNA_Ecto-sp13_S_contig17193.5097.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17193.5097.1 vs. uniprot
Match: A0A6H5K2M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M0_9PHAE)

HSP 1 Score: 301 bits (772), Expect = 3.890e-92
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 3 
Query:    3 EAGGYMDDSHSETTDTGSAFSYLESISMGQSVVPDGGSGALEAFTGPVYGLVAALLEQDMARPAPHKRGHRFRELFYLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGPAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVK 482
            E GGYMDDSHSETTDTGSAFSYLESISMGQSVVPDGG+GALEAFTGPVYGLVAALLEQDMARPA HKRGHRFRELFYLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGPAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVK
Sbjct:  693 EPGGYMDDSHSETTDTGSAFSYLESISMGQSVVPDGGNGALEAFTGPVYGLVAALLEQDMARPARHKRGHRFRELFYLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGPAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVK 852
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BLAST of mRNA_Ecto-sp13_S_contig17193.5097.1 vs. uniprot
Match: D8LQH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH1_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 3.450e-90
Identity = 155/159 (97.48%), Postives = 157/159 (98.74%), Query Frame = 3 
Query:    6 AGGYMDDSHSETTDTGSAFSYLESISMGQSVVPDGGSGALEAFTGPVYGLVAALLEQDMARPAPHKRGHRFRELFYLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGPAASLDARGEESVQRLESLRELLVAALHHHPDLPLGLCVK 482
            AGGYMDDSHSETTDTGSAFSYLESISMGQSVVPDGGSGALEAFTGPVYGLVAALLEQDMARPA HKRGHRFRELF+LSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGG AASLDARGEESVQRLE+LRELLVAALHHHPDLPLGLCVK
Sbjct: 2926 AGGYMDDSHSETTDTGSAFSYLESISMGQSVVPDGGSGALEAFTGPVYGLVAALLEQDMARPARHKRGHRFRELFHLSNGKSFQAAVLEDALDAVQDSPMLSTEGVQSSRPASRAGGGGAAASLDARGEESVQRLENLRELLVAALHHHPDLPLGLCVK 3084
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17193.5097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2M0_9PHAE3.890e-9298.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQH1_ECTSI3.450e-9097.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17193contigEcto-sp13_S_contig17193:262..1985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score289.7
Seed ortholog evalue8.3e-76
Seed eggNOG ortholog2880.D8LQH1
Model size484
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C9IK@1,2QS1U@2759
Cds size465
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.1766355-CDS-Ecto-sp13_S_contig17193:261..4861681462899.1766355-CDS-Ecto-sp13_S_contig17193:261..486Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17193 262..486 -
1681462899.191315-CDS-Ecto-sp13_S_contig17193:1145..13661681462899.191315-CDS-Ecto-sp13_S_contig17193:1145..1366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17193 1146..1366 -
1681462899.200897-CDS-Ecto-sp13_S_contig17193:1949..19681681462899.200897-CDS-Ecto-sp13_S_contig17193:1949..1968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17193 1950..1968 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.2100673-UTR-Ecto-sp13_S_contig17193:1968..19851681462899.2100673-UTR-Ecto-sp13_S_contig17193:1968..1985Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17193 1969..1985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17193.5097.1prot_Ecto-sp13_S_contig17193.5097.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17193 262..1968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17193.5097.1

>prot_Ecto-sp13_S_contig17193.5097.1 ID=prot_Ecto-sp13_S_contig17193.5097.1|Name=mRNA_Ecto-sp13_S_contig17193.5097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MDDSHSETTDTGSAFSYLESISMGQSVVPDGGSGALEAFTGPVYGLVAAL
LEQDMARPAPHKRGHRFRELFYLSNGKSFQAAVLEDALDAVQDSPMLSTE
GVQSSRPASRAGGGGPAASLDARGEESVQRLESLRELLVAALHHHPDLPL
GLCVK
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mRNA from alignment at Ecto-sp13_S_contig17193:262..1985-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17193.5097.1 ID=mRNA_Ecto-sp13_S_contig17193.5097.1|Name=mRNA_Ecto-sp13_S_contig17193.5097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1724bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17193:262..1985- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAAGCGGGGGGGTATATGGACGACTCGCACTCAGGTCCGTGTGCGGGG
AGGGGGGGTGTCCTTCTTGATCTTGAGTGTGTGTGTCGTTCTGGTGTGTC
TTCTCCTCGCAGGTGTCGGTGCATCCGAGTACTGTAGTTGTGAGTTGGGC
TCGATGGAGTGTTGTCGTGTAGGCGCGTGTGTTGCTTGTTCTGTGGGGGG
GGTGGTGCTGGTGGTATGGTCTGTCCCACCCGCGTATGTTGAGCTACGGC
TTTAGATCGGCATGTTATTCGTGCCGGGTGCTGCAGTCGTGTACGCTGTT
TTCGACGGATGGATAACCATGGTTTTCCCCCCTCAGTCTTGACGCCGAAA
AAGGCATGTGTCGCCCCCCCCGCCACCCCTCGGCGCCTCCCACGCCCTTG
CTCACCAATTTTCGGCACACTTCTTTTAGTCCCAACAGGCCGGTTGAACC
CCACGTACATTGTTCAGCCTCTTGCTCACCCAATGCTTGTTCGATTTCAA
CGAAACCTGATTTCAATAAACTGTTGTTGAATCTCACATAACATATTTCC
ATCTCACGCAGCGTGTAACAATGTCTTTTTTTTCTTTTTTGTCAAAAATT
CTGCGGGCCGTTAAACCAGAGACGACGGACACCGGCAGCGCGTTTAGCTA
CTTGGAGTCGATCTCGATGGGCCAGTCCGTGGTGCCAGACGGTGGCAGCG
GTGCTCTTGAGGCCTTCACCGGCCCCGTTTACGGCCTCGTTGCCGCCTTG
CTCGAGCAGGACATGGCGAGACCCGCGCCACACAAGCGAGGCCACCGTTT
CCGCGAGCTATTCTACCTCTCGAACGGCAAGAGCTTCCAGGTGACAGCCC
CACAGAAACACGAAACAACGCCATGGCAACACCACCACCACGTAGTACTG
TTGTCTGTTCCGATCTGCTGGCTTTTTTTGCACCCGTGTTCACACAGTGT
GATTCGCTGTGTTATCGCGCGAAGGCTGTGCTGCCTTCTTGGGCGATTGT
CAGTTCCGAGCGGCCCTCCTGCTGGCTTTATTGCACCTTGTTTCACGTTG
TGCGATCCGCAGTCTTACTTCGCGAATGCTGTGATGCCTTTTCGGGATTC
ATCGCGCAGTGGGCTGTGTCTCGCTTGTGGCCCAACCCTGCTAATTGGCG
ATCCTTCAAGCACCCCTCAACTCACCGCCGTAGTCGGAGCGCGTATCATG
CGCCAACACTCTACCCGGCCTTGCCGTCGCATACCCCGATTCTAGACGCC
TTTATCTGCTTGCTCATGGTACTGCGATTTTCCCCGACTCCCCGATACTC
TCGTGCTGCTGCCACCCCTACTGTTTCTTCTTGGGTGCCACTTTCCTGTT
CAACTTGCGAACTTCGTTTTGGTTGCCGTATTTCTCCGCCGTGCTGCTGC
CGTAGTTGACACCGTTGCTCTGACCAACACCCTCGGTAACCACAACTGCG
GTGCTGTGTGTGTCTGTCTTTGCCTCGAAACCAATCGCGCTTGCGAAAGG
CGGCGGTCCTAGAAGACGCTCTCGATGCCGTGCAAGACAGCCCCATGCTG
TCTACGGAAGGCGTTCAAAGCTCACGCCCAGCGTCGAGGGCGGGAGGGGG
AGGACCGGCGGCTTCCCTGGACGCAAGGGGCGAAGAGAGCGTGCAGAGAC
TCGAGAGCTTGAGAGAGCTGCTTGTCGCTGCTTTGCATCACCATCCCGAT
CTTCCCCTGGGGCTGTGCGTCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17193:262..1985-

>mRNA_Ecto-sp13_S_contig17193.5097.1 ID=mRNA_Ecto-sp13_S_contig17193.5097.1|Name=mRNA_Ecto-sp13_S_contig17193.5097.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17193:262..1985- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGACTCGCACTCAGAGACGACGGACACCGGCAGCGCGTTTAGCTA
CTTGGAGTCGATCTCGATGGGCCAGTCCGTGGTGCCAGACGGTGGCAGCG
GTGCTCTTGAGGCCTTCACCGGCCCCGTTTACGGCCTCGTTGCCGCCTTG
CTCGAGCAGGACATGGCGAGACCCGCGCCACACAAGCGAGGCCACCGTTT
CCGCGAGCTATTCTACCTCTCGAACGGCAAGAGCTTCCAGGCGGCGGTCC
TAGAAGACGCTCTCGATGCCGTGCAAGACAGCCCCATGCTGTCTACGGAA
GGCGTTCAAAGCTCACGCCCAGCGTCGAGGGCGGGAGGGGGAGGACCGGC
GGCTTCCCTGGACGCAAGGGGCGAAGAGAGCGTGCAGAGACTCGAGAGCT
TGAGAGAGCTGCTTGTCGCTGCTTTGCATCACCATCCCGATCTTCCCCTG
GGGCTGTGCGTCAAG
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