mRNA_Ecto-sp13_S_contig17190.5096.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17190.5096.1
Unique NamemRNA_Ecto-sp13_S_contig17190.5096.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17190.5096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17190contigEcto-sp13_S_contig17190:3195..3694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size282
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462899.10439-CDS-Ecto-sp13_S_contig17190:3195..33651681462899.10439-CDS-Ecto-sp13_S_contig17190:3195..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17190 3196..3365 -
1681462899.1139343-CDS-Ecto-sp13_S_contig17190:3585..36941681462899.1139343-CDS-Ecto-sp13_S_contig17190:3585..3694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17190 3586..3694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17190.5096.1prot_Ecto-sp13_S_contig17190.5096.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17190 3196..3694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17190.5096.1

>prot_Ecto-sp13_S_contig17190.5096.1 ID=prot_Ecto-sp13_S_contig17190.5096.1|Name=mRNA_Ecto-sp13_S_contig17190.5096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
LSTVSFQDHLPDREGCGYPRPSVRTASGHNQNTVTKWNEEAPHLAGRVIS
AREVTQRAHASCGYMKSATEWTIDILLVAGSTLYTVTALCCIW
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mRNA from alignment at Ecto-sp13_S_contig17190:3195..3694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17190.5096.1 ID=mRNA_Ecto-sp13_S_contig17190.5096.1|Name=mRNA_Ecto-sp13_S_contig17190.5096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=500bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17190:3195..3694- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCGACTGTTTCATTTCAAGATCATCTTCCTGATCGAGAAGGCTGTGG
CTACCCGAGACCTTCCGTGAGAACAGCAAGCGGGCACAACCAGAACACGG
TTACGAAATGTATGTATGGATACATGCCCTGTCATGTGACATGTGACACT
ACAGCCCATGTTGTTGCAATGCCATCTCTTCAGGCAACAGGACCACAAAT
ACCGACCTGGTTGCTATCTGGTATTATTGCATGCGTGTGTCCAGTATACG
CATGTGTAGACAGCAGGCTTCGACTTCAAAAACAGGTCTCGAGAAAACAT
ATTACGTCTACTTACTCGCCAATCAACAGGGAACGAAGAGGCTCCGCACC
TAGCCGGGCGCGTGATTTCTGCACGGGAGGTTACCCAAAGGGCTCACGCA
AGCTGTGGCTACATGAAATCTGCCACGGAATGGACGATTGACATCCTGCT
CGTGGCAGGGTCAACGTTGTACACCGTGACGGCGCTCTGTTGCATCTGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17190:3195..3694-

>mRNA_Ecto-sp13_S_contig17190.5096.1 ID=mRNA_Ecto-sp13_S_contig17190.5096.1|Name=mRNA_Ecto-sp13_S_contig17190.5096.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17190:3195..3694- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATCGACTGTTTCATTTCAAGATCATCTTCCTGATCGAGAAGGCTGTGG
CTACCCGAGACCTTCCGTGAGAACAGCAAGCGGGCACAACCAGAACACGG
TTACGAAATGGAACGAAGAGGCTCCGCACCTAGCCGGGCGCGTGATTTCT
GCACGGGAGGTTACCCAAAGGGCTCACGCAAGCTGTGGCTACATGAAATC
TGCCACGGAATGGACGATTGACATCCTGCTCGTGGCAGGGTCAACGTTGT
ACACCGTGACGGCGCTCTGTTGCATCTGG
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