mRNA_Ecto-sp13_S_contig1719.5094.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1719.5094.1
Unique NamemRNA_Ecto-sp13_S_contig1719.5094.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Match: A0A5N6L2R7_9ROSI (FAD_binding_3 domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6L2R7_9ROSI)

HSP 1 Score: 50.1 bits (118), Expect = 2.080e-5
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:   58 DFAIVGGGPAGLAAAVGLKEKGLNVKVFEAAPEFSERGAAV 180
            D AIVGGG AG+  A+GL ++G+NVK++E AP F+E GA V
Sbjct:    5 DIAIVGGGIAGVTLAIGLLKRGINVKIYEQAPNFAEIGAGV 45
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BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Match: A0A178AK47_9PLEO (Mannitol 1-phosphate dehydrogenase n=1 Tax=Stagonospora sp. SRC1lsM3a TaxID=765868 RepID=A0A178AK47_9PLEO)

HSP 1 Score: 49.3 bits (116), Expect = 3.900e-5
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   55 LDFAIVGGGPAGLAAAVGLKEKGLNVKVFEAAPEFSERGAAV 180
            L  AIVGGG  GLA A+GL + G+NV+++E+AP FSE GA V
Sbjct:   19 LPIAIVGGGLCGLALAIGLVKHGINVRIYESAPAFSEIGAGV 60
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BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Match: A0A835XX33_9CHLO (FAD_binding_3 domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XX33_9CHLO)

HSP 1 Score: 49.3 bits (116), Expect = 3.940e-5
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   40 SGQKVLDFAIVGGGPAGLAAAVGLKEKG--LNVKVFEAAPEFSERGAAVFLQ 189
            S  + LD A+VGGGPAGLAAA+ L        VKVFEAAP + E+GA V +Q
Sbjct:    6 SNDEQLDIAVVGGGPAGLAAALALLAAAPEAKVKVFEAAPAYREQGAGVLVQ 57
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BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Match: A0A6A6CR99_9PEZI (FAD_binding_3 domain-containing protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CR99_9PEZI)

HSP 1 Score: 48.9 bits (115), Expect = 5.310e-5
Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:   46 QKVLDFAIVGGGPAGLAAAVGLKEKGLNVKVFEAAPEFSERGAAVFL 186
            +K    AIVGGG  GL  A+GL ++G++V ++EAAP+FSE GA V L
Sbjct:    9 EKKYSLAIVGGGIGGLCTAIGLLKQGVDVHIYEAAPQFSEIGAGVSL 55
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BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Match: A0A2V1D9X6_9PLEO (FAD/NAD(P)-binding domain-containing protein n=1 Tax=Periconia macrospinosa TaxID=97972 RepID=A0A2V1D9X6_9PLEO)

HSP 1 Score: 48.5 bits (114), Expect = 7.260e-5
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   52 VLDFAIVGGGPAGLAAAVGL-KEKGLNVKVFEAAPEFSERGAAV 180
            V++ AI+GGG AG A A  L K + +NV +FE+APEFSERGAAV
Sbjct:    6 VIEVAIIGGGLAGAALANALLKHRHINVNIFESAPEFSERGAAV 49
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BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Match: S8FJK7_FOMPI (FAD/NAD-binding domain-containing protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8FJK7_FOMPI)

HSP 1 Score: 48.1 bits (113), Expect = 9.950e-5
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   31 TASSGQKVLDFAIVGGGPAGLAAAVGLKEKGLNVKVFEAAPEFSERGAAV 180
            TA+  Q+ L  A+VG G  GL  A+ L++KG++V++FEAAP+F E GA +
Sbjct:    3 TAAENQEPLKVALVGAGVVGLTCALALRQKGVSVQLFEAAPQFKEIGAGI 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1719.5094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A5N6L2R7_9ROSI2.080e-558.54FAD_binding_3 domain-containing protein n=1 Tax=Ca... [more]
A0A178AK47_9PLEO3.900e-559.52Mannitol 1-phosphate dehydrogenase n=1 Tax=Stagono... [more]
A0A835XX33_9CHLO3.940e-555.77FAD_binding_3 domain-containing protein n=1 Tax=Ed... [more]
A0A6A6CR99_9PEZI5.310e-553.19FAD_binding_3 domain-containing protein n=1 Tax=Za... [more]
A0A2V1D9X6_9PLEO7.260e-561.36FAD/NAD(P)-binding domain-containing protein n=1 T... [more]
S8FJK7_FOMPI9.950e-548.00FAD/NAD-binding domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1719contigEcto-sp13_S_contig1719:473..673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size201
Hectar predicted targeting categoryother localisation
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462898.8950298-CDS-Ecto-sp13_S_contig1719:472..6731681462898.8950298-CDS-Ecto-sp13_S_contig1719:472..673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1719 473..673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1719.5094.1prot_Ecto-sp13_S_contig1719.5094.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1719 473..673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1719.5094.1

>prot_Ecto-sp13_S_contig1719.5094.1 ID=prot_Ecto-sp13_S_contig1719.5094.1|Name=mRNA_Ecto-sp13_S_contig1719.5094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
ASSATASASATASSGQKVLDFAIVGGGPAGLAAAVGLKEKGLNVKVFEAA
PEFSERGAAVFLQVMI*
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mRNA from alignment at Ecto-sp13_S_contig1719:473..673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1719.5094.1 ID=mRNA_Ecto-sp13_S_contig1719.5094.1|Name=mRNA_Ecto-sp13_S_contig1719.5094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1719:473..673- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGTCAGCGACAGCTTCCGCAAGTGCCACGGCATCTTCGGGGCAGAA
AGTCCTCGACTTCGCCATTGTGGGTGGTGGCCCTGCTGGACTTGCCGCAG
CGGTGGGGTTAAAAGAAAAGGGGTTGAACGTGAAGGTGTTCGAAGCCGCC
CCAGAGTTCTCTGAGAGAGGGGCAGCCGTCTTCCTCCAGGTGATGATTTG
A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1719:473..673-

>mRNA_Ecto-sp13_S_contig1719.5094.1 ID=mRNA_Ecto-sp13_S_contig1719.5094.1|Name=mRNA_Ecto-sp13_S_contig1719.5094.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1719:473..673- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCTCGTCAGCGACAGCTTCCGCAAGTGCCACGGCATCTTCGGGGCAGAA
AGTCCTCGACTTCGCCATTGTGGGTGGTGGCCCTGCTGGACTTGCCGCAG
CGGTGGGGTTAAAAGAAAAGGGGTTGAACGTGAAGGTGTTCGAAGCCGCC
CCAGAGTTCTCTGAGAGAGGGGCAGCCGTCTTCCTCCAGGTGATGATTTG
A
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