mRNA_Ecto-sp13_S_contig17183.5089.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17183.5089.1
Unique NamemRNA_Ecto-sp13_S_contig17183.5089.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: D8LJP0_ECTSI (Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.460e-28
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 FSERFPLSPELWQEWIDDRRAAGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            FSERFPL PELWQEWIDDRRAAGGEDGAED+LALYRRAFADYQCAKLWPGY
Sbjct:   65 FSERFPLGPELWQEWIDDRRAAGGEDGAEDILALYRRAFADYQCAKLWPGY 115          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A835Z6Q0_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.450e-15
Identity = 34/51 (66.67%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 FSERFPLSPELWQEWIDDRRAAGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            F++ FPLSPELW +WI D +A GG   A DV ALY RAF DYQCA LWPGY
Sbjct:   88 FAKAFPLSPELWADWIADEKAGGGN--AADVKALYERAFKDYQCAALWPGY 136          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A8C5EDF6_9TELE (Spliceosome associated factor 3, U4/U6 recycling protein n=9 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5EDF6_9TELE)

HSP 1 Score: 54.7 bits (130), Expect = 2.500e-7
Identity = 24/51 (47.06%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    4 SERFPLSPELWQEWI-DDRRAAGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            SE FPL+ ELW +W+ D++R A GE   E V  L+ RA  DY C  +W  Y
Sbjct:  119 SELFPLTEELWLDWLKDEKRLAEGEQNRESVYELFERAVKDYICPDIWQEY 169          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A0R3SSP7_HYMDI (Uncharacterized protein n=2 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SSP7_HYMDI)

HSP 1 Score: 51.6 bits (122), Expect = 3.060e-6
Identity = 23/51 (45.10%), Postives = 31/51 (60.78%), Query Frame = 1
Query:    4 SERFPLSPELWQEWIDDRRAAGGEDGAEDVLA-LYRRAFADYQCAKLWPGY 153
            +E FPL+PELW  WI D RA   E+ + D +  L++RA  DYQ   +W  Y
Sbjct:   65 AENFPLTPELWLNWIADERALLKENASRDPIENLFKRALTDYQSVDVWLEY 115          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A5K3FJU3_MESCO (Uncharacterized protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3FJU3_MESCO)

HSP 1 Score: 50.4 bits (119), Expect = 5.120e-6
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 1
Query:    4 SERFPLSPELWQEWIDDRRA--AGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            S+ FPL+PELW EWI D  +    G D  E V  L++RA ADYQ   +W  Y
Sbjct:   75 SQHFPLTPELWLEWIKDEMSLLTDGND-REPVYKLFKRALADYQNVDVWLEY 125          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: UPI001C725089 (squamous cell carcinoma antigen recognized by T-cells 3 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI001C725089)

HSP 1 Score: 50.8 bits (120), Expect = 5.720e-6
Identity = 22/51 (43.14%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    4 SERFPLSPELWQEWI-DDRRAAGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            S+ FPL+PELW +WI D++  A  ++  E++ AL++RA  DY   +LW  Y
Sbjct:   73 SKLFPLTPELWLDWISDEKNLATTKEQKENLTALFQRALKDYSSVQLWLEY 123          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A484M8G1_9ASTE (RRM domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484M8G1_9ASTE)

HSP 1 Score: 50.8 bits (120), Expect = 5.720e-6
Identity = 21/48 (43.75%), Postives = 28/48 (58.33%), Query Frame = 1
Query:   13 FPLSPELWQEWIDDRRA-AGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            FPLSP++WQEWI D  + + G +   D+  LY R  +DY    LW  Y
Sbjct:   99 FPLSPDMWQEWIKDEMSLSSGSEAFSDIQNLYERGVSDYLSVALWCDY 146          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A0R3UNX5_MESCO (Uncharacterized protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UNX5_MESCO)

HSP 1 Score: 50.4 bits (119), Expect = 7.840e-6
Identity = 25/52 (48.08%), Postives = 31/52 (59.62%), Query Frame = 1
Query:    4 SERFPLSPELWQEWIDDRRA--AGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            S+ FPL+PELW EWI D  +    G D  E V  L++RA ADYQ   +W  Y
Sbjct:   84 SQHFPLTPELWLEWIKDEMSLLTDGND-REPVYKLFKRALADYQNVDVWLEY 134          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A2Z6R0L0_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6R0L0_9GLOM)

HSP 1 Score: 50.4 bits (119), Expect = 7.840e-6
Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 1
Query:   13 FPLSPELWQEWIDDR-RAAGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            FPLS E+W+EWI+D  R A  ++  + ++ LY +A  DY    LW GY
Sbjct:   78 FPLSEEMWREWIEDESRIASTKEEKQRIIQLYSKAVQDYLSINLWKGY 125          
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Match: A0A2P2I7J5_9CRUS (Squamous cell carcinoma antigen recognized by T-cells 3-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I7J5_9CRUS)

HSP 1 Score: 50.1 bits (118), Expect = 1.070e-5
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 1
Query:    4 SERFPLSPELWQEWI-DDRRAAGGEDGAEDVLALYRRAFADYQCAKLWPGY 153
            ++ +PLSPELW EWI D++     E+    V +L  RA  DY C K+W  Y
Sbjct:   77 NKHYPLSPELWLEWIKDEQSVCSSEEERAFVTSLLDRAVNDYACVKVWTEY 127          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17183.5089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJP0_ECTSI3.460e-2896.08Sart3 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A835Z6Q0_9STRA2.450e-1566.67RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8C5EDF6_9TELE2.500e-747.06Spliceosome associated factor 3, U4/U6 recycling p... [more]
A0A0R3SSP7_HYMDI3.060e-645.10Uncharacterized protein n=2 Tax=Hymenolepis diminu... [more]
A0A5K3FJU3_MESCO5.120e-648.08Uncharacterized protein n=1 Tax=Mesocestoides cort... [more]
UPI001C7250895.720e-643.14squamous cell carcinoma antigen recognized by T-ce... [more]
A0A484M8G1_9ASTE5.720e-643.75RRM domain-containing protein n=3 Tax=Cuscuta sect... [more]
A0A0R3UNX5_MESCO7.840e-648.08Uncharacterized protein n=2 Tax=Mesocestoides cort... [more]
A0A2Z6R0L0_9GLOM7.840e-643.75Uncharacterized protein n=2 Tax=Rhizophagus clarus... [more]
A0A2P2I7J5_9CRUS1.070e-543.14Squamous cell carcinoma antigen recognized by T-ce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17183contigEcto-sp13_S_contig17183:652..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.2
Seed ortholog evalue9.2e-24
Seed eggNOG ortholog2880.D8LJP0
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.positive regulation of histone deubiquitination
EggNOG OGsKOG0128@1,KOG0128@2759
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462898.630244-CDS-Ecto-sp13_S_contig17183:651..8041681462898.630244-CDS-Ecto-sp13_S_contig17183:651..804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17183 652..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17183.5089.1prot_Ecto-sp13_S_contig17183.5089.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17183 652..804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17183.5089.1

>prot_Ecto-sp13_S_contig17183.5089.1 ID=prot_Ecto-sp13_S_contig17183.5089.1|Name=mRNA_Ecto-sp13_S_contig17183.5089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
FSERFPLSPELWQEWIDDRRAAGGEDGAEDVLALYRRAFADYQCAKLWPG
Y
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mRNA from alignment at Ecto-sp13_S_contig17183:652..804-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17183.5089.1 ID=mRNA_Ecto-sp13_S_contig17183.5089.1|Name=mRNA_Ecto-sp13_S_contig17183.5089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17183:652..804- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCCGAGCGGTTTCCGCTTAGCCCCGAGCTTTGGCAGGAGTGGATAGA CGATCGCCGGGCAGCTGGGGGAGAGGACGGCGCGGAAGACGTCCTGGCTC TCTACCGCCGCGCGTTCGCGGATTACCAGTGCGCCAAGCTCTGGCCCGGG TAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17183:652..804-

>mRNA_Ecto-sp13_S_contig17183.5089.1 ID=mRNA_Ecto-sp13_S_contig17183.5089.1|Name=mRNA_Ecto-sp13_S_contig17183.5089.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17183:652..804- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCCGAGCGGTTTCCGCTTAGCCCCGAGCTTTGGCAGGAGTGGATAGA
CGATCGCCGGGCAGCTGGGGGAGAGGACGGCGCGGAAGACGTCCTGGCTC
TCTACCGCCGCGCGTTCGCGGATTACCAGTGCGCCAAGCTCTGGCCCGGG
TAC
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