mRNA_Ecto-sp13_S_contig17181.5087.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17181.5087.1
Unique NamemRNA_Ecto-sp13_S_contig17181.5087.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: D7FLN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.450e-48
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 3 
Query:    6 MNSSSVESKGEPSADLFKATAALILFSIALVGGLLPQRLQDVGKKVVSCLNMAAGGVFFSTAMVHMLPESSETLSDAWGDVFPWAGFLC 272
            MNSSSVES GEPSAD+FKATAALILFSIAL GGLLPQRLQ+VG+ VVSCLNMAAGG+FFSTAMVHMLPESSETL+DAWGDVFPWAGFLC
Sbjct:    1 MNSSSVESNGEPSADVFKATAALILFSIALFGGLLPQRLQNVGEMVVSCLNMAAGGIFFSTAMVHMLPESSETLNDAWGDVFPWAGFLC 89
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: D7FLN8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN8_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.820e-44
Identity = 75/83 (90.36%), Postives = 80/83 (96.39%), Query Frame = 3 
Query:   24 ESKGEPSADLFKATAALILFSIALVGGLLPQRLQDVGKKVVSCLNMAAGGVFFSTAMVHMLPESSETLSDAWGDVFPWAGFLC 272
            ES GEPSADLFKATAALILFSIALVGGLLPQRLQ+VGKKVVSCLNMAAGGVFF++AMVHMLPESSETL+DAWGDVFPW G+ C
Sbjct:    5 ESNGEPSADLFKATAALILFSIALVGGLLPQRLQNVGKKVVSCLNMAAGGVFFASAMVHMLPESSETLNDAWGDVFPWGGYFC 87
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: A0A0L0DIC2_THETB (Zinc transporter ZIP1 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIC2_THETB)

HSP 1 Score: 55.8 bits (133), Expect = 4.380e-7
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 3 
Query:   57 KATAALILFSIALVGGLLPQRLQDVGKK--VVSCLNMAAGGVFFSTAMVHMLPESSETLSDAWGDVFPWAGFLC 272
            K  A +++F +A+ GGL+  RLQ    K  V+   N  AGG+F +  MVHMLPE++  L DA+ D+ P A  LC
Sbjct:   64 KLYALMLVFGVAMAGGLMAIRLQAYKHKDLVMELGNSLAGGIFLAAGMVHMLPEATAALYDAFPDL-PVAPALC 136
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: K3X4C2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4C2_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 4.030e-6
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = 3 
Query:   54 FKATAALILFSIALVGGLLPQRL--QDVGK-KVVSCLNMAAGGVFFSTAMVHMLPESSET------LSDAWGDVFPWAGFL 269
            FK  +A +++ +A+ GG++P  L  Q  GK  + S LNM AGG+F S A++H+LP++ E       L ++  + F WA F 
Sbjct:    8 FKLFSAALIWILAIAGGIVPLMLRGQHHGKGSLTSVLNMFAGGIFLSGAVLHLLPDAQENEALSTWLCESEDECFKWANFF 88
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: A0A662Y3S4_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y3S4_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.820e-5
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 3 
Query:   48 DLFKATAALILFSIALVGGLLPQ-RLQDVGKKVVSCLNMAAGGVFFSTAMVHMLPESSETLS-DAWG 242
            D FK  AAL+++ +ALVGG+ P    Q V ++  S LNM A G+F +++ +H+LP++    +   WG
Sbjct:    5 DRFKLFAALLIWVLALVGGVAPLLSSQRVSQRASSVLNMVAAGIFLASSCMHLLPDAQHNKALTQWG 71
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: UPI00148ACA54 (zinc transporter ZIP1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148ACA54)

HSP 1 Score: 49.3 bits (116), Expect = 8.870e-5
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 3 
Query:   57 KATAALILFSIALVGGLLPQRL----------QDVGKKVVSCLNMAAGGVFFSTAMVHMLPESSETLSDAWGDVFPWAGFL 269
            K  +  +LF    + G+LP  L          + + ++ +S LN  AGGVFF+TA++H++PESSE L   +   +P +G L
Sbjct:    6 KIISIFVLFFATFLIGILPHGLLRLLRSKFFKERLYQRYISVLNCFAGGVFFATAILHLIPESSELLHGMFKIQYPVSGAL 86
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BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Match: K1S4I7_CRAGI (Zinc transporter ZIP3 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1S4I7_CRAGI)

HSP 1 Score: 49.3 bits (116), Expect = 9.460e-5
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 3 
Query:   57 KATAALILFSIALVGGLLPQRL----------QDVGKKVVSCLNMAAGGVFFSTAMVHMLPESSETLSDAWGDVFPWAGFL 269
            K  +  +LF    + G+LP  L          + + ++ +S LN  AGGVFF+TA++H++PESSE L   +   +P +G L
Sbjct:   18 KIISIFVLFFATFLIGILPHGLLRLLKSKFFKERLYQRYISVLNCFAGGVFFATAILHLIPESSELLHGMFKIQYPVSGAL 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17181.5087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FLN7_ECTSI2.450e-4891.01Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLN8_ECTSI1.820e-4490.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0DIC2_THETB4.380e-743.24Zinc transporter ZIP1 n=1 Tax=Thecamonas trahens A... [more]
K3X4C2_GLOUD4.030e-637.04Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662Y3S4_9STRA4.820e-538.81Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
UPI00148ACA548.870e-534.57zinc transporter ZIP1 n=1 Tax=Crassostrea gigas Ta... [more]
K1S4I7_CRAGI9.460e-534.57Zinc transporter ZIP3 n=1 Tax=Crassostrea gigas Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17181contigEcto-sp13_S_contig17181:919..3549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score167.5
Seed ortholog evalue2.7e-39
Seed eggNOG ortholog2880.D7FLN7
Model size273
KEGG koko:K14709
KEGG TC2.A.5.1,2.A.5.3,2.A.5.6
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.zinc ion transmembrane transporter activity
EggNOG OGsKOG1558@1,KOG1558@2759
Ec32 ortholog descriptionZinc/iron permease
Ec32 orthologEc-17_000430.1
Cds size267
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462898.4886823-CDS-Ecto-sp13_S_contig17181:918..9961681462898.4886823-CDS-Ecto-sp13_S_contig17181:918..996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17181 919..996 -
1681462898.5028424-CDS-Ecto-sp13_S_contig17181:3355..35441681462898.5028424-CDS-Ecto-sp13_S_contig17181:3355..3544Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17181 3356..3544 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462898.5108693-UTR-Ecto-sp13_S_contig17181:3544..35491681462898.5108693-UTR-Ecto-sp13_S_contig17181:3544..3549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17181 3545..3549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17181.5087.1prot_Ecto-sp13_S_contig17181.5087.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17181 919..3544 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17181.5087.1

>prot_Ecto-sp13_S_contig17181.5087.1 ID=prot_Ecto-sp13_S_contig17181.5087.1|Name=mRNA_Ecto-sp13_S_contig17181.5087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MNSSSVESKGEPSADLFKATAALILFSIALVGGLLPQRLQDVGKKVVSCL
NMAAGGVFFSTAMVHMLPESSETLSDAWGDVFPWAGFLC
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mRNA from alignment at Ecto-sp13_S_contig17181:919..3549-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17181.5087.1 ID=mRNA_Ecto-sp13_S_contig17181.5087.1|Name=mRNA_Ecto-sp13_S_contig17181.5087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2631bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17181:919..3549- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCATGAACAGCAGCAGCGTAGAGTCTAAAGGAGAGCCTTCGGCCGAC
TTGTTCAAGGCCACAGCTGCGCTGATCCTTTTCTCGATAGCGCTGGTCGG
AGGTCTCCTGCCTCAGCGTCTGCAAGATGTCGGCAAGAAGGTGGTGTCGT
GCCTCAACATGGCAGCGGGCGGAGTCTTCTTCTCTACGGCGATGGTGAGA
GGCAGAGAGGAAGACAGACAGACAGACAGAAAGACAGACAGACAGACAGA
GTGACTACCCGTGCATAGTCAAGCCGTGCGTAATTGCTTCGTGATCACCG
CAATCTATATACAACTAAGCAGTAGTCTGCTGTAGTATAACGCGACCCTC
CAAAATTATTGTGCTGTCATCCGACGCCGTCGGATAGCGCATGCGACCTA
GGACGAGGAATGTTTGTACAGCAGTTCGGTCGTGGGCCCTGTATTCTGCT
GTCCATAGTGCCGGTCGAATACTGCGTGCTGGTGTAGTGCCGGTGTTTTC
GGCCCGCACATATGGTACTGATGTACTAAGTCGTTCCTGTACTAAACTCC
GAATAGTGCCGGTGTCGGCGTCCGGTAGAGTGCCGGCAAAGTCTTTGGAC
ACGTGCAGTACGTACACACCGATTCCGACACAGCGTCCACTATTTGTAGT
ACTTCTACACCACACCAGAAGTACACTGCTGCAGGCCTCACGCCGTGTCA
AAGATAGCAGCTACCGGTGCAGATGGGTGTCTCGAAGTTCTGCAACCAGC
TCATGCGTTTTCTCGTGCATGCATGTGTGTGTGGTGTGGACCACATGGGA
CAACATCGACGCCGTCGGATACCGGATGCGTAGACAAGTTGACACGATGG
TTGACATGTCGCACCCCGCGGACGAAAGGAAGGAAAGGCAACACCAGACA
GAGCAGCAGAGTGGACGCGGCCAACAAGAAAATACCGTGCAGGTAGGACA
GACTTGCCGCCCAGAAACGCACCCGGTCCCCAACGACAAAGGGCGAGGAA
ATGTTTGCACAGTGCCGGTCGGATAGTGCCGGGTGCCGGTATAGTGCCGT
ACTTGTACGCAGGTTCAGCGTGTCCCACTGGCTCTGATCTCACAGGCAAA
ACTCGTACAAGAGAGGGTACAAGGCGATATCTAGATACCGATATGTCGTC
ACTGCTGTTTCTGCCAGATATTCGTTGTGTGTAATCACTCCAACCTTTTG
AGACACAGGAGAGTTGACCCGCCTCGATTCATGTGGAACTCTTCCCGTGT
GTGTGTAAATCAACAACAGAAATAATAAAACCCAGCAAGTTGCCAAGGGA
CACTGCGACGGGTTCCTCTGACGGTAGAATATTACAGCACACGACATAAC
GGAGGGTTTCTCCCCGATGTTTTGTCGTTGACCCCGCACGTAGAGAACAC
TACGGGGGAGATGCCTCGTGGTGTTTGTTCCTCTACAGTGATTTTGTGAA
TGGCACCTGCTGGCCACTGGTCACTGGTGGAAAAAAAACAGTGTGTAGGG
TTGAAATAGGCTCCAAATAAGCCCAGTACCCAGCCGGTTTCCCTCCATTC
ACTGTGAAGACTTTCACACATCCCGTTGGACTGTGGTCTTATCTCGAATG
GGTTGTCTCCCTGTGTTTGTATTCATGTTTCCTTATACAACGGCAGTTGC
AGAATTACCAGTTCACCATCACATTACGTCAGAGGTAGTCTAGTGCGAGG
ATGGAGAACGCGGAGACAAAGGTGCACACGTACACACACCCGGATCGCAG
GGCTGGTGTGTGAAAATCATCGTAGCTATCCTCCTCCCTGACTCTTGGCT
CTAAGTTTGCGTTGCTGCGTGCTCTGGGGGTGGATTGCGGCTGGGAAAAA
ACTACTTCCAGCTCCCTGGGTGCAAGGTTGAGGTGGCGGGTTGCCATCGA
TGTCCCTCTTGCTTTGTAGGTTGCGGCGTAAATGCCAGACTACTCGAAAA
TGGACAAGACGCCAAGTCAAACAAAGGCCGCTGGTTGGCGGACGCCGAGT
TAAATCTACCGGCCGTATGTATCCCGCCGCTGTTTTCTGTTGCCGGGTAC
ATGCACACACAGCAGCAGTCCATGGGTGATCGAGCGTCTCGGTGGTGAAT
GTGCGGCGACGAATCTCGCCATAGGCACCAAAAAGGGGGTCTGGTCGAGA
AATCGATATATGTTTTGAAATTTCGAAAGCCGGTGTAGGCTCTGAACCCG
AAGTTCGGGGCATCGTGGGACACACCCCGTTCGTTTAGACGCACAATCGT
TCTTCAGGGATTTCACCCCAATATAATGGCAATGGTTGCACGCAACTGAT
TGTCTGATAGCAGGTTTTTTTCGGAGCTGAGTGCACCGTAGGATCTACAG
CAATGTTCGGCGAAGCTGTGCGTGAAAATTAAACTCTAATAGAGGAGCAT
TTGGCTGCTGTTGTCGTCGACTTTTTAAATTTTGCGCTACTGTCGTCTAT
CCTCCTCCCCCCCCCCCCCCCCCCCCCCCGTGTTTTTTTTGTCGATCGGT
CCGTCGATCTTCTACCATCATTCTTTTCACTGTTTTTTTGTTCATGCCTG
CAGGTGCATATGTTGCCTGAGAGCAGCGAGACGCTGAGTGACGCTTGGGG
GGACGTGTTTCCATGGGCAGGCTTCTTATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17181:919..3549-

>mRNA_Ecto-sp13_S_contig17181.5087.1 ID=mRNA_Ecto-sp13_S_contig17181.5087.1|Name=mRNA_Ecto-sp13_S_contig17181.5087.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17181:919..3549- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAGCAGCAGCGTAGAGTCTAAAGGAGAGCCTTCGGCCGACTTGTT
CAAGGCCACAGCTGCGCTGATCCTTTTCTCGATAGCGCTGGTCGGAGGTC
TCCTGCCTCAGCGTCTGCAAGATGTCGGCAAGAAGGTGGTGTCGTGCCTC
AACATGGCAGCGGGCGGAGTCTTCTTCTCTACGGCGATGGTGCATATGTT
GCCTGAGAGCAGCGAGACGCTGAGTGACGCTTGGGGGGACGTGTTTCCAT
GGGCAGGCTTCTTATGC
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