mRNA_Ecto-sp13_S_contig17180.5086.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: D7G5E5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E5_ECTSI) HSP 1 Score: 348 bits (894), Expect = 3.670e-119 Identity = 172/180 (95.56%), Postives = 174/180 (96.67%), Query Frame = 1
Query: 181 MRLASLQVTFACRCLAVVAVGVLWWFQQQVEASLGVGWETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVR 720
MRLASLQVT ACRCLAVVAVGVLWW QQ VEASLGVGW+TLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRL+LEVVAAIAVYDAAFFAWHASLHSNPALYRRVHA HHKCHVQRAPE R
Sbjct: 1 MRLASLQVTSACRCLAVVAVGVLWWCQQPVEASLGVGWKTLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLVLEVVAAIAVYDAAFFAWHASLHSNPALYRRVHAKHHKCHVQRAPEVGR 180
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A830HPD7_9CHLO (Fatty acid hydroxylase domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HPD7_9CHLO) HSP 1 Score: 166 bits (419), Expect = 4.490e-46 Identity = 85/219 (38.81%), Postives = 132/219 (60.27%), Query Frame = 1
Query: 202 VTFACRCLAVVAVGVLWWFQQQVEASLGVGWETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDF--FVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
+T + R L V A + + +A + W+ LR W F+H++FEP L+ SF F++ LW +D + +++R S+ + W + + L Y+APL ++D + PRR LP AP+ + +V+ ++ +YD F +H ++HS+P LYRRVHA HH V RA +AVR + ++ +DV+CSI AL G HPLSRA++N+VI LITELH+G
Sbjct: 13 ITVSVRVLIVAAFTTMCLRRNHADAFVQNAWDDLRVRWWFQHDTFEPVLATTSFAFWMALWYAVDLVAYAHIPTRYRLQTSESMHQWKPQGHVAQEVLLYLAPLAMYDHVKPRRVLPPDAPTALACLAQVMCSLLLYDCLFAIFHRAMHSHPVLYRRVHAKHHHNAVVRARDAVRVSALEQLVDVSCSILALKLTGSHPLSRAIHNIVITFLITELHSG 231
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A6A7GA17_9CRUS (Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA17_9CRUS) HSP 1 Score: 160 bits (406), Expect = 3.670e-44 Identity = 80/191 (41.88%), Postives = 118/191 (61.78%), Query Frame = 1
Query: 292 WETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSW----FGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
WE+ R +++KH+SFEPF+ ++F WG +D P K++ F + + W F RI+ + + Y+APL+IFD ++PRR+LP + S GRL EV + +YDA FF H LH P ++R +HA HH +A + +R +F + ++V+CSI A+N G HPLSRAVYN+VII L+ ELH G
Sbjct: 52 WESARTTFIWKHDSFEPFIVVSTFFLVFSFWGAIDKLCPQFHKYK-FHAHIVEDWKTFRFPVDRIKSEFIGYVAPLLIFDFLYPRRRLPADSVSFGRLWFEVTLCLLIYDALFFVAHWLLHIIPTVFRAIHARHHDMIPIKALDTIRLSFAEQIINVSCSIIAVNVSGSHPLSRAVYNIVIICLLVELHCG 241
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A1Y1I1Z9_KLENI (Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Z9_KLENI) HSP 1 Score: 140 bits (352), Expect = 2.730e-36 Identity = 77/214 (35.98%), Postives = 128/214 (59.81%), Query Frame = 1
Query: 214 CRCLAVVAVGVLWWFQQQVEASLGVGWETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQ-RAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
C CL + AV ++ + A++ W+T R+ L +H+SFEP ++ +F + +W LD +VPS ++ LS ++ +W R +A++Y+APL++FD I+PRR+L + PS+ R++ +V+ A+ +YD FF H +LH P L RR HA HH RA +A R ++ V +I +LN + CH LSR ++N+ I ++TE+H+G
Sbjct: 10 CICLLIAAVA---FYHKSANAAVAAVWDTYRSIPLVQHDSFEPLVAVTAFFIWTRMWHVLDVYVPSLRVYKLHLSHNIKAWKLEGYPRWEAVYYLAPLLVFDWIYPRRKLDQPPPSVERVVFDVIGALLIYDLLFFFSHLALHKVPFL-RRFHARHHVMGGDMRACDATRAHPLEELALVTFAITSLNLLRCHFLSRFIFNITIGYMLTEVHSG 219
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A7S2UXV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV7_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.580e-31 Identity = 68/148 (45.95%), Postives = 87/148 (58.78%), Query Frame = 1
Query: 475 RDQALWYIAPLVIFDLIFPRRQL----PESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPA------------------LYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
+++ +WYI PLV FDLI PRR L +PS ++ ++ ++ YD FF HA LH P LYR +HA HH RA EAVRHTF+DGSM V CSI AL G HPL+RA++N+V+IGL+TELHAG
Sbjct: 2 QEELIWYIFPLVAFDLILPRRHLLLENHADSPSALVVLWQLACSLFWYDVLFFFLHAFLHLGPGFLWGSGSKSGGVKESVGWLYRTIHAKHHSQPHLRACEAVRHTFLDGSMTVGCSILALKLAGSHPLARALHNIVLIGLLTELHAG 149
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A0G4I189_9ALVE (Fatty acid hydroxylase domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I189_9ALVE) HSP 1 Score: 127 bits (319), Expect = 5.170e-31 Identity = 79/228 (34.65%), Postives = 125/228 (54.82%), Query Frame = 1
Query: 190 ASLQVTFACRCLAVVAVGVLWWFQQQVEASLGVGWETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSASKHRTFLSDDLSSWFGGTRIRDQ-------ALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
A+LQ++ R + +V + + +Q+++ L W +LR KH+S EP S F F++ L+ F D + P + R DD G I+ Q + YI PL+ FD++FPRR+LPE PS L+ V A++ +YD FF H H P L++ +H HH+ +A E VR +F+DG++ V +I ALN + HPL+R +++ I L+TE+H+G
Sbjct: 11 AALQLSS--RLVVLVVLVTCFLHRQRLDDLLDSFWGSLRRQPWIKHDSCEPLFSTVVFFFWVNLFRFFDLYCPFLWRFRYNQRDDPVK--EGFLIKTQDPHGVLAVVGYIVPLLAFDVLFPRRRLPERGPSFFGLLGSVAASLWLYDLLFFFVHLGFHKIP-LFQGIHRRHHQEGRMKASEVVRLSFLDGALQVGANILALNLLRLHPLARLLHDAAITFLLTEIHSG 233
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A7S0SGA9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGA9_9CHLO) HSP 1 Score: 126 bits (316), Expect = 1.330e-30 Identity = 77/226 (34.07%), Postives = 110/226 (48.67%), Query Frame = 1
Query: 214 CRCLAVVAVGVLWWFQQQVEASLGVGWETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDF-------------FVPSASKHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
CR + V+ V + +Q++A + W R L K ++FEP L F F+ W +D P + +T W + L Y+ PL+ FD ++PRR LP AP++ + EV+ + +YDA F A H +H P L++RVHA HH RA E R + + D CSI AL HPLSRAVYNVVI+ L+ E+H+G
Sbjct: 19 CRLVCVMLVAGVCAHAEQLDACVADFWAWARETRLMKWDTFEPALVMTVFTIFLLSWQSIDLGRWGSHAWSARYRLQPGGPEGKTHAEHSRKIWKAEGYGAQEFLLYLVPLLAFDWLYPRRVLPTQAPTVAGMAAEVLGTLVLYDALFTASHTVMHGVPWLFKRVHAKHHLHRHVRAREIFRLSAPEEVADTGCSILALTLTRAHPLSRAVYNVVIVFLLCEIHSG 244
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A7S2S5J1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5J1_9STRA) HSP 1 Score: 120 bits (302), Expect = 3.640e-29 Identity = 68/203 (33.50%), Postives = 114/203 (56.16%), Query Frame = 1
Query: 262 QQVEASLGVGWETLRANWLFKHESFEPFLSAASFLFFIGLWGFLDFFVPSAS-----KHRTFLSDDLSSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPESAPS-LGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
+ +++++ W ++ F+H++FEP ++ SF +I + LD +P K+R D FG +++ L Y+ L FD ++PRR+LP++ P G+++L +V A+ VYD FF H ++H L R H HH + E +RH+F+DGS+ V C+I ALN + HP SR +YN+V+ ++TE+H G
Sbjct: 1 ESIDSAVERSWSWIKEKQWFQHDTFEPLVATLSFAVWIHAFRILDL-MPLGQYIIDPKYRAL---DARVGFG-VKVKS-GLVYLGTLFTFDFLYPRRKLPDTCPGGAGKVLLHIVLALFVYDFLFFHIHVAMHKVEGL-RSFHKKHHSVRGLHSTEVLRHSFVDGSLQVMCNIAALNLLKLHPYSRTLYNIVVTYMLTEIHCG 196
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: C1MJV3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MJV3_MICPC) HSP 1 Score: 111 bits (278), Expect = 6.610e-25 Identity = 67/173 (38.73%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 454 WFGGTRIRD---QALWYIAPLVIFDLIFPRRQLPESAPSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHA----------------------------------THHKCHVQ---RAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
W R RD + Y+ PL++FD ++PRR LP + PS RL L+VVA++AVYDA F A H ++H +PA++RRVHA TH K H RA + R + + +DVACS+ A+N HPLSRAVYNVVI+ L+ +H+G
Sbjct: 139 WTPDFRTRDGFQEFALYLVPLLVFDWLYPRRALPVAPPSTCRLALDVVASLAVYDALFSATHRAMHRHPAVFRRVHAKDFTVWFRSRHTSTPFDSTPDAFRLRPASTPPTPTHAKHHANADVRARDVFRLSAAEEVVDVACSVIAVNITRAHPLSRAVYNVVIVALLCAIHSG 311
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Match: A0A7S2MS10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS10_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.000e-23 Identity = 56/138 (40.58%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 448 SSWFGGTRIRDQALWYIAPLVIFDLIFPRRQLPES---APSLGRLILEVVAAIAVYDAAFFAWHASLHSNPALYRRVHATHHKCHVQRAPEAVRHTFIDGSMDVACSIFALNAVGCHPLSRAVYNVVIIGLITELHAG 852
S W G I + L Y+ L I+D+ PRR + AP+ + EV+ ++ +YD FF H +H P LY+ VHA HH+ RA + V +F++ +DV SIFALN +GCHP+SR +YN++I ++TELH G
Sbjct: 51 SKWHMGFWIFELPL-YVLXLYIWDICIPRRAAKIAIWGAPTALGICKEVMGSLLLYDLGFFVCHYLMHKVPLLYKYVHAKHHRSSEVRASDIVNLSFVEEIVDVGISIFALNFLGCHPISRTLYNIIITFMLTELHCG 187 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17180.5086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17180.5086.1 >prot_Ecto-sp13_S_contig17180.5086.1 ID=prot_Ecto-sp13_S_contig17180.5086.1|Name=mRNA_Ecto-sp13_S_contig17180.5086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=225bp MRLASLQVTFACRCLAVVAVGVLWWFQQQVEASLGVGWETLRANWLFKHEback to top mRNA from alignment at Ecto-sp13_S_contig17180:1089..3578+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17180.5086.1 ID=mRNA_Ecto-sp13_S_contig17180.5086.1|Name=mRNA_Ecto-sp13_S_contig17180.5086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2490bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17180:1089..3578+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17180:1089..3578+ >mRNA_Ecto-sp13_S_contig17180.5086.1 ID=mRNA_Ecto-sp13_S_contig17180.5086.1|Name=mRNA_Ecto-sp13_S_contig17180.5086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17180:1089..3578+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |