mRNA_Ecto-sp13_S_contig1718.5085.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1718.5085.1
Unique NamemRNA_Ecto-sp13_S_contig1718.5085.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: D8LCB9_ECTSI (Inorganic diphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCB9_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 1.710e-38
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1
Query:   25 NSQQVISVWHDIPLYVRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            +SQQVISVWHDIPLYVRDE EKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK
Sbjct:   49 HSQQVISVWHDIPLYVRDEAEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 114          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A835YXT5_9STRA (Inorganic diphosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXT5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.100e-26
Identity = 52/67 (77.61%), Postives = 56/67 (83.58%), Query Frame = 1
Query:   25 NSQQVISVWHDIPLYVRDE-TEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            +  +VIS WHDIPLYV DE + K TG LNFVCEIPRCSRKKFEIAT E GNPIKQD KKG+LREFKK
Sbjct:   31 HDSKVISAWHDIPLYVLDEFSNKPTGLLNFVCEIPRCSRKKFEIATKEPGNPIKQDEKKGVLREFKK 97          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A7S2V803_9STRA (Inorganic diphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V803_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.600e-23
Identity = 46/67 (68.66%), Postives = 54/67 (80.60%), Query Frame = 1
Query:   22 TNSQQVISVWHDIPLYVRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            +  ++V+S+WHD+PLY  DE    TG LNFVCEIPRCSRKK+EIAT+E GNPIKQD KKG LR FKK
Sbjct:   88 SEEKRVLSLWHDLPLYCTDEYGLRTGSLNFVCEIPRCSRKKYEIATDEPGNPIKQDEKKGQLRVFKK 154          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A7S3UN01_HETAK (Inorganic diphosphatase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UN01_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 2.530e-21
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 1
Query:   25 NSQQVISVWHDIPLY-VRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            N +++ S+WHD+PLY    ET K TG L F+CEIPR +RKK+EIAT+E GNPIKQD K G LREF K
Sbjct:    2 NKKKIFSLWHDLPLYCTHPETNKPTGKLKFICEIPRTTRKKYEIATDEPGNPIKQDQKNGKLREFMK 68          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A1Z5KHH2_FISSO (Inorganic diphosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHH2_FISSO)

HSP 1 Score: 92.8 bits (229), Expect = 6.080e-21
Identity = 49/75 (65.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 RLPARAPTNSQQVISVWHDIPLYVRDETEKC-TGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            RL A  P   ++ IS+WHDI LY  D   K  T +LNFVCEIP+ +RKKFEIAT+E GNPIKQDTKKG LREFKK
Sbjct:   44 RLQAVCPEKKKK-ISLWHDISLYHMDPVTKAETPYLNFVCEIPKFTRKKFEIATDEEGNPIKQDTKKGQLREFKK 117          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A6U4FME2_9STRA (Inorganic diphosphatase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FME2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.450e-21
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   28 SQQVISVWHDIPLYVRDE-TEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            S + IS WHD+ L+ R+E +   TG LNFVCEIP+ SRKKFE+ATNE  NPIKQDTKKG+LREFKK
Sbjct:  167 SNEPISFWHDVALFHREEESNAATGALNFVCEIPKFSRKKFEVATNEPQNPIKQDTKKGMLREFKK 232          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A7S4JNG1_9STRA (Inorganic diphosphatase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JNG1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.650e-20
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   22 TNSQQVISVWHDIPL-YVRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            T  ++ IS+WHDI L ++   T++ T +LNFVCEIP+ SRKK+EIAT+EVGNPIKQD KKG LREFKK
Sbjct:   52 TKGKKEISLWHDITLVHIDPATDRPTPYLNFVCEIPKFSRKKYEIATDEVGNPIKQDEKKGKLREFKK 119          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A7S1Y8S7_9STRA (Inorganic diphosphatase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y8S7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.480e-20
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1
Query:   22 TNSQQVISVWHDIPL-YVRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            +N  + IS+WHD+ L ++  ET + T +LNFVCEIP+ +RKK+EIAT+EVGNPIKQDTKKG LREFKK
Sbjct:   54 SNCGKTISLWHDVSLAHLDTETGEPTTNLNFVCEIPKFTRKKYEIATDEVGNPIKQDTKKGKLREFKK 121          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A7S2EA91_TRICV (Inorganic diphosphatase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA91_TRICV)

HSP 1 Score: 88.6 bits (218), Expect = 3.920e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   40 ISVWHDIPL-YVRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            IS+WHD+ L ++   T++ T +LNFVCEIP+ SRKK+EIAT+EVGNPIKQD KKG LREFKK
Sbjct:   77 ISLWHDVTLVHIDPATDRPTPYLNFVCEIPKFSRKKYEIATDEVGNPIKQDEKKGKLREFKK 138          
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Match: A0A7S0AEZ5_9STRA (Inorganic diphosphatase (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AEZ5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.970e-20
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1
Query:   40 ISVWHDIPL-YVRDETEKCTGHLNFVCEIPRCSRKKFEIATNEVGNPIKQDTKKGLLREFKK 222
            IS+WHD+ L ++   T++ T +LNFVCEIP+ SRKK+EIAT+EVGNPIKQD KKG LREFKK
Sbjct:   28 ISLWHDVTLVHIDPATDRPTPYLNFVCEIPKFSRKKYEIATDEVGNPIKQDEKKGKLREFKK 89          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1718.5085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCB9_ECTSI1.710e-3896.97Inorganic diphosphatase n=1 Tax=Ectocarpus silicul... [more]
A0A835YXT5_9STRA3.100e-2677.61Inorganic diphosphatase n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V803_9STRA1.600e-2368.66Inorganic diphosphatase n=1 Tax=Fibrocapsa japonic... [more]
A0A7S3UN01_HETAK2.530e-2162.69Inorganic diphosphatase (Fragment) n=1 Tax=Heteros... [more]
A0A1Z5KHH2_FISSO6.080e-2165.33Inorganic diphosphatase n=2 Tax=Fistulifera solari... [more]
A0A6U4FME2_9STRA6.450e-2168.18Inorganic diphosphatase n=1 Tax=Phaeomonas parva T... [more]
A0A7S4JNG1_9STRA2.650e-2064.71Inorganic diphosphatase n=1 Tax=Odontella aurita T... [more]
A0A7S1Y8S7_9STRA3.480e-2064.71Inorganic diphosphatase n=1 Tax=Grammatophora ocea... [more]
A0A7S2EA91_TRICV3.920e-2067.74Inorganic diphosphatase (Fragment) n=1 Tax=Trieres... [more]
A0A7S0AEZ5_9STRA5.970e-2067.74Inorganic diphosphatase (Fragment) n=1 Tax=Minutoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1718contigEcto-sp13_S_contig1718:15615..15836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score137.9
Seed ortholog evalue1.9e-30
Seed eggNOG ortholog2880.D8LCB9
Model size222
KEGG koko:K01507
KEGG Pathwayko00190,map00190
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.inorganic diphosphatase activity
EggNOG OGsCOG0221@1,KOG1626@2759
Ec32 ortholog descriptioninorganic pyrophosphatase
Ec32 orthologEc-14_005330.1
EC3.6.1.1
Cds size222
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462898.3694298-CDS-Ecto-sp13_S_contig1718:15614..158361681462898.3694298-CDS-Ecto-sp13_S_contig1718:15614..15836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1718 15615..15836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1718.5085.1prot_Ecto-sp13_S_contig1718.5085.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1718 15615..15836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1718.5085.1

>prot_Ecto-sp13_S_contig1718.5085.1 ID=prot_Ecto-sp13_S_contig1718.5085.1|Name=mRNA_Ecto-sp13_S_contig1718.5085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
RLPARAPTNSQQVISVWHDIPLYVRDETEKCTGHLNFVCEIPRCSRKKFE
IATNEVGNPIKQDTKKGLLREFKK
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mRNA from alignment at Ecto-sp13_S_contig1718:15615..15836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1718.5085.1 ID=mRNA_Ecto-sp13_S_contig1718.5085.1|Name=mRNA_Ecto-sp13_S_contig1718.5085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1718:15615..15836+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTTCCCGCGCGCGCGCCCACCAACAGCCAGCAGGTGATATCCGTCTG GCACGACATCCCCCTCTACGTGCGCGACGAGACGGAGAAGTGCACCGGCC ACCTCAATTTCGTGTGCGAGATCCCCCGCTGCTCCCGCAAGAAGTTCGAG ATCGCCACGAACGAGGTCGGGAACCCCATCAAGCAGGACACTAAGAAGGG ACTGCTGCGGGAGTTCAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1718:15615..15836+

>mRNA_Ecto-sp13_S_contig1718.5085.1 ID=mRNA_Ecto-sp13_S_contig1718.5085.1|Name=mRNA_Ecto-sp13_S_contig1718.5085.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1718:15615..15836+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCTTCCCGCGCGCGCGCCCACCAACAGCCAGCAGGTGATATCCGTCTG
GCACGACATCCCCCTCTACGTGCGCGACGAGACGGAGAAGTGCACCGGCC
ACCTCAATTTCGTGTGCGAGATCCCCCGCTGCTCCCGCAAGAAGTTCGAG
ATCGCCACGAACGAGGTCGGGAACCCCATCAAGCAGGACACTAAGAAGGG
ACTGCTGCGGGAGTTCAAGAAG
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