mRNA_Ecto-sp13_S_contig17175.5083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: D7FJG1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG1_ECTSI) HSP 1 Score: 227 bits (579), Expect = 1.350e-65 Identity = 108/112 (96.43%), Postives = 109/112 (97.32%), Query Frame = 1
Query: 19 LRVLTVTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRDVCCPLCHLDISKALTGSSGVAFVSVIEGNPRPVIERTRR 354
L V VTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNR+VCCPLCHLDISKALTGSSGVAFVSVIEGNPRPVIERTRR
Sbjct: 87 LPVTVVTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRNVCCPLCHLDISKALTGSSGVAFVSVIEGNPRPVIERTRR 198
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A7S2Y0A3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0A3_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 3.710e-16 Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 31 TVTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRDVCCPLCHLDISKALTGSSG 294
TVT K A +A GE DDD ++CR+CLS+YQ G+ +R+LPCFH+FH ID+WL R VCCPLC+ + KAL G
Sbjct: 114 TVTHRGDCKAAATAQEAFGE--------DDDKVSCRVCLSEYQDGECLRVLPCFHKFHKGCIDEWLERSVCCPLCNTSVDKALQQHGG 193
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A835ZD21_9STRA (FAD dependent oxidoreductase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD21_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.110e-10 Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 1
Query: 49 CAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWL-NRDVCCPLCHLDISKALTGSSGV 297
C + + G E +D+D ++CR+CL +Y+ GD++RILPC HR+HV +D+WL R CPLC+ ++ L G G+
Sbjct: 242 CGARSGSLGECGGGGQGAREEVDEDKISCRVCLCEYEAGDELRILPCLHRYHVHCVDEWLVKRSPACPLCNTSVAVVLHGHPGL 325
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A4D9D6F5_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F5_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.200e-10 Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 97 PKAEPID--DDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRDVCCPLC 255
P + +D DD ++CRICL DY GD++R+LPCFHRFH DWL R CPLC
Sbjct: 116 PPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRKKTCPLC 170
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A6H5KTI9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI9_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 2.800e-10 Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 103 AEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRDVCCPLCHLDISKA 276
AE ++D ++CR+CLSDY+ GD +RILPC H+FH ID+WL R V CPLC+ + A
Sbjct: 916 AEHGEEDKVSCRVCLSDYEAGDTLRILPCLHKFHRVCIDEWLGRSVLCPLCNTSVEVA 973
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: W7U3U3_9STRA (Ring u-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3U3_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 1.470e-9 Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 97 PKAEPID--DDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNRDVCCPLC 255
P + +D DD ++CRICL DY GD++R+LPCFHRFH DWL R CPLC
Sbjct: 268 PPLKKVDSHDDDVSCRICLEDYAEGDRLRVLPCFHRFHAECSSDWLKRRKTCPLC 322
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A6J5U009_PRUAR (RING-type domain-containing protein n=1 Tax=Prunus armeniaca TaxID=36596 RepID=A0A6J5U009_PRUAR) HSP 1 Score: 66.2 bits (160), Expect = 1.800e-9 Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 121 DSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLN-RDVCCPLCHLDISKALTGSS 291
D+ C ICLS+Y GDK+R+LPC H FH+ +D WL + CPLC D+ K + SS
Sbjct: 53 DAQECYICLSEYNEGDKIRVLPCCHEFHMECVDRWLKEKQSVCPLCRGDVCKGIAESS 110
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A5B8N0M7_9CHLO (RING-type domain-containing protein n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0M7_9CHLO) HSP 1 Score: 72.0 bits (175), Expect = 1.920e-9 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1
Query: 88 EQAPKAEPIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNR-DVCCPLCHLDISKALTGSSGVAF 303
E + ++ +D + TC IC+ +Y+ GD++R LPC HRFH+S ID+WL + + CPLC DI K + SS A
Sbjct: 288 EDSACSDALDSSTETCAICIEEYEDGDRLRELPCGHRFHISCIDEWLTKVNSVCPLCKFDIGKHVKNSSADAI 360
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A0D7BJU2_9AGAR (RING-type domain-containing protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BJU2_9AGAR) HSP 1 Score: 70.9 bits (172), Expect = 3.900e-9 Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query: 109 PIDDDSMTCRICLSDYQPGDKVRILPCFHRFHVSEIDDWL-NRDVCCPLCHLDISKALTGSSGVAFVSVIEGNPRPVIERT 348
P +D + C ICLS++ GDKVR+LPC H FH++E+D+WL R CP+C D++ GS+ V + P++ RT
Sbjct: 314 PWFEDQLECAICLSEFAKGDKVRVLPCHHIFHLAEVDEWLIQRKKLCPICKADVTHP--GSTAVPTLQENATEETPLLSRT 392
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Match: A0A022RQQ1_ERYGU (RING-type domain-containing protein (Fragment) n=3 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RQQ1_ERYGU) HSP 1 Score: 63.5 bits (153), Expect = 4.350e-9 Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 133 CRICLSDYQPGDKVRILPCFHRFHVSEIDDWLNR-DVCCPLCHLDISKALTGSSG 294
C ICLSDY+ GDK+R+LPC H +HVS ID WL + CPLC D+ A SG
Sbjct: 1 CYICLSDYEEGDKLRVLPCNHEYHVSCIDKWLKEVNRVCPLCRHDVCGAGGECSG 55 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17175.5083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17175.5083.1 >prot_Ecto-sp13_S_contig17175.5083.1 ID=prot_Ecto-sp13_S_contig17175.5083.1|Name=mRNA_Ecto-sp13_S_contig17175.5083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp MLLLRVLTVTEEMCAKKKHQAVDANGEQAPKAEPIDDDSMTCRICLSDYQback to top mRNA from alignment at Ecto-sp13_S_contig17175:227..3710- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17175.5083.1 ID=mRNA_Ecto-sp13_S_contig17175.5083.1|Name=mRNA_Ecto-sp13_S_contig17175.5083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17175:227..3710- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17175:227..3710- >mRNA_Ecto-sp13_S_contig17175.5083.1 ID=mRNA_Ecto-sp13_S_contig17175.5083.1|Name=mRNA_Ecto-sp13_S_contig17175.5083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17175:227..3710- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |