mRNA_Ecto-sp13_S_contig17170.5082.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17170.5082.1
Unique NamemRNA_Ecto-sp13_S_contig17170.5082.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: D7FLK6_ECTSI (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK6_ECTSI)

HSP 1 Score: 498 bits (1282), Expect = 2.890e-173
Identity = 234/238 (98.32%), Postives = 237/238 (99.58%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            ++AQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLG GNGGSVML+RAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG
Sbjct:   92 KRAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGRGNGGSVMLARAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 329          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A6H5JFU4_9PHAE (Galactinol--sucrose galactosyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU4_9PHAE)

HSP 1 Score: 497 bits (1279), Expect = 8.300e-168
Identity = 233/238 (97.90%), Postives = 237/238 (99.58%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            ++AQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYL+SQGVHGVKVDAQSVVNFLG GNGGSVML+RAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG
Sbjct:  437 KKAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLKSQGVHGVKVDAQSVVNFLGRGNGGSVMLARAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 674          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A835YGP5_9STRA (Galactinol--sucrose galactosyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGP5_9STRA)

HSP 1 Score: 369 bits (948), Expect = 3.740e-117
Identity = 173/256 (67.58%), Postives = 202/256 (78.91%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEG--GRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQ----------------DWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            ++A+ E  I YFLVWHAIAGYWAGVD+D+PDL K++P+RA L  P  IV VDPDMKMFFRV KFLNKRFGVVPPE IR+FYD+YHRYLR  GV GVKVDAQS++NF+G  NGGSV +SRA+H ALSKSV ++F D D  +G G  GRIIHCMCHD+EILL LP+CY R+P+IRGSDDFYPRD+ SH  H+Y+NAFN+L+I  CGLQ                DWDMFQT +G  SWMHAASRA+SGGPVYISDRPG
Sbjct:  525 QKAKTEHDIKYFLVWHAIAGYWAGVDMDAPDLFKFRPQRARLTAPLDIVAVDPDMKMFFRVCKFLNKRFGVVPPEHIRAFYDEYHRYLRENGVDGVKVDAQSLLNFVGYNNGGSVEMSRAYHYALSKSVTRHFPDGDTARGSGRGGRIIHCMCHDNEILLTLPSCYARRPLIRGSDDFYPRDEASHGSHLYSNAFNALLIGHCGLQAKALDGFTHHALAGLRDWDMFQTTLGPVSWMHAASRAISGGPVYISDRPG 780          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A7S3Y1T0_HETAK (Galactinol--sucrose galactosyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1T0_HETAK)

HSP 1 Score: 275 bits (702), Expect = 5.590e-85
Identity = 131/250 (52.40%), Postives = 169/250 (67.60%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGG------------RIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            R+ + +FG+  FLVWHA+AGYWAGV+  +P L KY     L + P  +++VD D+         +NK+ G+V P+   +FY+DYHRYL  QGV G+KVDAQS+VN +G G GGSV ++ A+H AL +S  K+FS    E  EG              +IHCMCHDSEILL L   Y  +P++RGSDD YPRD  SH PH+Y NAFN+L++S  GLQDWDMFQT +G  SW+H A+RAVSGGPVY+SDRPG
Sbjct:  108 REVKRDFGVKEFLVWHALAGYWAGVER-TPALEKYAIVDTLPHSPEKLMQVDRDLWKLTLYLNLMNKKQGMVHPDHAGAFYEDYHRYLAEQGVDGIKVDAQSIVNVMGNGLGGSVKVAAAYHKALQRSSMKHFSGRRKEGVEGXXXXXXXXQPRAPNLIHCMCHDSEILLLLAGLYEHRPLVRGSDDHYPRDPASHGPHLYFNAFNALLVSFVGLQDWDMFQTALGPGSWLHGAARAVSGGPVYVSDRPG 356          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A836CJ91_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ91_9STRA)

HSP 1 Score: 266 bits (680), Expect = 3.190e-83
Identity = 134/252 (53.17%), Postives = 171/252 (67.86%), Query Frame = 1
Query:    7 AQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKR--FGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACY-------------GRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCG-LQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            A+ ++G++ FLVWHA+ GYW GVD+D P+L  YK +   L  P GI E      +  R S ++ +R  FG+VPPE I +FY +YH YLR+ GV GVKVDAQS+++ LG G GG+V L+RA   AL+ SVR +F         G  +IHCMCHDS +LLQLP  Y             G +P++RGSDDFYPRD  SH  HIYANAFN+L+++ CG LQDWDMFQT++G    MHAA+RA+SGGPVYISDRPG
Sbjct:   21 AKTKYGVENFLVWHAVQGYWQGVDVDRPELASYKAQWRRLVVPEGISERVGSTVL--RRSAYMQRRYGFGLVPPETISAFYQEYHGYLRAHGVDGVKVDAQSILSCLGEGQGGTVALTRASQAALAASVRAHFG--------GPAVIHCMCHDSAMLLQLPVHYPDGRGGXXXXXXSGVRPIVRGSDDFYPRDPASHGTHIYANAFNALLLAYCGALQDWDMFQTSLGAVGAMHAAARAISGGPVYISDRPG 262          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: D8LQ35_ECTSI (Galactinol--sucrose galactosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ35_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 4.030e-71
Identity = 117/252 (46.43%), Postives = 163/252 (64.68%), Query Frame = 1
Query:   10 QEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIG-----------------DASWMHAASRAVSGGPVYISDRPG 714
            + +FG++  L WHA+AGYWAGV+ ++ ++V + P  A L  P GI EVDP+M+      +  +KRFG+V    + +FY  YH YLR  GV GVKVDAQS+++ +G GNGG   +++A+H  L +SV+  F     E G    +IHCMCH   +L  +      + VIRGSDDFYPR+  SH PH+Y+N+FN+L++S+ G+QDWDMFQT +G                 +ASW HAA+RA+SGGPVY+SDRPG
Sbjct:  321 KRDFGVERVLAWHAMAGYWAGVEPEASEMVPFDPLVAKLLAPEGIQEVDPEMQ-----PELDHKRFGMVRLGNVEAFYRAYHGYLRDNGVDGVKVDAQSILDCMGGGNGGVPAVTKAYHEGLVQSVQATFK----EGGRPAALIHCMCHAPSVLFHIACVSEDRAVIRGSDDFYPREDLSHGPHLYSNSFNALLLSNLGVQDWDMFQTGLGVQGTGDAAGAAGLSEGANASWFHAAARAISGGPVYVSDRPG 563          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A2I0X2S9_9ASPA (Galactinol--sucrose galactosyltransferase n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0X2S9_9ASPA)

HSP 1 Score: 191 bits (486), Expect = 1.100e-52
Identity = 97/236 (41.10%), Postives = 140/236 (59.32%), Query Frame = 1
Query:    7 AQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            A+E++G+ +  VWHAI GYW GV   S ++ +++      N  PG+ E +P MK      + L    G++ P+ +  FY++ H YL + G+ GVKVD QS++  LG G+GG V L+R +H AL  SV K F D+          I CMCH ++ L     C  +  V+R SDDFYPRD  SH+ HI + AFN++ +    + DWDMF + +  A   HA++RA+SGGPVY+SD PG
Sbjct:  334 AKEKYGLKFVYVWHAITGYWGGVQPGSEEMAEFESTIQYPNISPGVAENEPWMKTDILTLQGL----GLINPKSVHKFYNELHSYLATVGIDGVKVDVQSILETLGTGHGGRVQLARQYHDALDASVAKNFPDNG--------CIACMCHHTDALY----CAKQTAVVRASDDFYPRDSMSHTIHIASVAFNNVFLGEFMVPDWDMFHS-LHPAGEYHASARAISGGPVYVSDAPG 552          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A0D9WMF1_9ORYZ (Galactinol--sucrose galactosyltransferase n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WMF1_9ORYZ)

HSP 1 Score: 192 bits (487), Expect = 1.340e-52
Identity = 101/238 (42.44%), Postives = 140/238 (58.82%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            + A++++G+ Y  VWHAI GYW GV      + +Y+      N  PG+VE +P+MK     ++ L    G+V P  +  FYD+ H YL + GV GVKVD Q V+  LG G+GG V L+R FH AL  S+ K F D+         II CM H+++ L     C  +  V+R SDDFYPRD  SH+ HI + A+NS+ +    L DWDMF + +  A   H ++RA+SGGPVY+SD PG
Sbjct:  378 KTAKKKYGLKYVFVWHAITGYWGGVRPGVAGMEEYESTMKFPNVSPGVVENEPNMKTDVLTTQGL----GLVHPRAVYRFYDELHAYLAAAGVDGVKVDVQCVLETLGAGHGGRVSLTRQFHQALDASIAKNFPDNG--------IIACMSHNTDALY----CAKQTAVVRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMLPDWDMFHS-LHPAGDYHGSARAISGGPVYVSDAPG 598          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: J3MBQ0_ORYBR (Galactinol--sucrose galactosyltransferase n=2 Tax=Oryza TaxID=4527 RepID=J3MBQ0_ORYBR)

HSP 1 Score: 191 bits (484), Expect = 2.930e-52
Identity = 103/238 (43.28%), Postives = 136/238 (57.14%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            R A+E++G+ Y  VWHAI GYW GV      +  Y       N  PG+VE +P MK     ++ L    G+V P  +  FYD+ H YL + GV GVKVD Q V+  LG G+GG V L+R FH AL  S+ K F ++         II CM H ++ L     C  +  V+R SDDFYPRD  SH+ HI A A+NS+ +    L DWDMF + +  A   H ++RA+SGGPVY+SD PG
Sbjct:  389 RAAKEKYGLKYVYVWHAITGYWGGVRPGVAGMEGYHSNMQFPNVSPGVVENEPGMKTDVLTTQGL----GLVHPRAVYRFYDELHAYLAAAGVDGVKVDVQCVLETLGAGHGGRVSLTRQFHQALDASIAKNFPENG--------IIACMSHHTDALY----CAKQTAVVRASDDFYPRDPVSHTIHIAAVAYNSVFLGEFMLPDWDMFHS-LHPAGDYHGSARAISGGPVYVSDAPG 609          
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Match: A0A194YHH7_SORBI (Galactinol--sucrose galactosyltransferase n=6 Tax=Andropogoneae TaxID=147429 RepID=A0A194YHH7_SORBI)

HSP 1 Score: 190 bits (483), Expect = 3.730e-52
Identity = 100/238 (42.02%), Postives = 136/238 (57.14%), Query Frame = 1
Query:    1 RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVEVDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDAQSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCMCHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISSCGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG 714
            R A+EE+G+ Y  VWHAI GYW GV    P    Y+         PG++E +P MK      + L    G+V P  +  FYD+ H YL + GV GVKVD Q ++  LG G+GG V L+R +H AL  S+ K F ++         II CM H+++ L     C  +  V+R SDDFYPRD  SH+ HI + A+NS+ +    L DWDMF + +  A   H ++RA+SGGPVY+SD PG
Sbjct:  382 RAAKEEYGLKYVYVWHAITGYWGGVRPGEPGTEHYRSSMQFPKVSPGVMENEPGMKTDVLTVQGL----GLVHPRAVYRFYDELHAYLAAAGVDGVKVDVQCILETLGAGHGGRVQLTRQYHQALDASIAKNFPENG--------IIACMSHNTDALY----CSKQTAVVRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMLPDWDMFHS-LHQAGDYHGSARAISGGPVYVSDAPG 602          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17170.5082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLK6_ECTSI2.890e-17398.32Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A6H5JFU4_9PHAE8.300e-16897.90Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A835YGP5_9STRA3.740e-11767.58Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A7S3Y1T0_HETAK5.590e-8552.40Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A836CJ91_9STRA3.190e-8353.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LQ35_ECTSI4.030e-7146.43Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
A0A2I0X2S9_9ASPA1.100e-5241.10Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
A0A0D9WMF1_9ORYZ1.340e-5242.44Galactinol--sucrose galactosyltransferase n=1 Tax=... [more]
J3MBQ0_ORYBR2.930e-5243.28Galactinol--sucrose galactosyltransferase n=2 Tax=... [more]
A0A194YHH7_SORBI3.730e-5242.02Galactinol--sucrose galactosyltransferase n=6 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17170contigEcto-sp13_S_contig17170:416..3650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score498.8
Seed ortholog evalue1.4e-138
Seed eggNOG ortholog2880.D7FLK6
Preferred nameAGA1
Model size717
KEGG rclassRC00049,RC00059
KEGG koko:K06617
KEGG ReactionR02411
KEGG Pathwayko00052,map00052
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004557,GO:0005575,GO:0005911,GO:0005975,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009311,GO:0009313,GO:0009506,GO:0009628,GO:0015925,GO:0016052,GO:0016787,GO:0016798,GO:0030054,GO:0033530,GO:0034484,GO:0044238,GO:0050896,GO:0052692,GO:0055044,GO:0071704,GO:0080167,GO:1901575
Exons5
EggNOG free text desc.galactinol-sucrose galactosyltransferase activity
EggNOG OGs2CC3R@1,2QPVE@2759
Ec32 ortholog descriptionAlpha-galactosidase, family GH36
Ec32 orthologEc-17_000840.1
EC2.4.1.82
Cds size717
COG Functional cat.S
CAZyGH36
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462898.1437635-CDS-Ecto-sp13_S_contig17170:415..5541681462898.1437635-CDS-Ecto-sp13_S_contig17170:415..554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17170 416..554 +
1681462898.1575499-CDS-Ecto-sp13_S_contig17170:1158..13281681462898.1575499-CDS-Ecto-sp13_S_contig17170:1158..1328Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17170 1159..1328 +
1681462898.176236-CDS-Ecto-sp13_S_contig17170:1735..19031681462898.176236-CDS-Ecto-sp13_S_contig17170:1735..1903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17170 1736..1903 +
1681462898.187073-CDS-Ecto-sp13_S_contig17170:2604..27391681462898.187073-CDS-Ecto-sp13_S_contig17170:2604..2739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17170 2605..2739 +
1681462898.1961079-CDS-Ecto-sp13_S_contig17170:3545..36501681462898.1961079-CDS-Ecto-sp13_S_contig17170:3545..3650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17170 3546..3650 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17170.5082.1prot_Ecto-sp13_S_contig17170.5082.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17170 416..3650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17170.5082.1

>prot_Ecto-sp13_S_contig17170.5082.1 ID=prot_Ecto-sp13_S_contig17170.5082.1|Name=mRNA_Ecto-sp13_S_contig17170.5082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
RQAQEEFGIDYFLVWHAIAGYWAGVDLDSPDLVKYKPRRALLNRPPGIVE
VDPDMKMFFRVSKFLNKRFGVVPPEKIRSFYDDYHRYLRSQGVHGVKVDA
QSVVNFLGPGNGGSVMLSRAFHTALSKSVRKYFSDSDGEKGEGGRIIHCM
CHDSEILLQLPACYGRQPVIRGSDDFYPRDKGSHSPHIYANAFNSLMISS
CGLQDWDMFQTNIGDASWMHAASRAVSGGPVYISDRPG*
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mRNA from alignment at Ecto-sp13_S_contig17170:416..3650+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17170.5082.1 ID=mRNA_Ecto-sp13_S_contig17170.5082.1|Name=mRNA_Ecto-sp13_S_contig17170.5082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17170:416..3650+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACAGGCCCAAGAGGAGTTCGGCATCGACTACTTTTTGGTCTGGCACGC CATCGCCGGGTACTGGGCAGGAGTAGACCTGGACTCCCCGGACTTGGTTA AGTACAAGCCGCGCCGGGCTTTGCTTAACCGGCCACCTGGTGAGGATAGC TACACTACAAAGATAGTAGGTCTTGCTGCGTGGCGGGGGGTCTGCACGCT AGATGTTGCTCGGGGGCGGGAAGAGCGTCAGTGTTTTCAACTCTGAGCAG TGTGATGATCCCGGTGGCAAATGTAAGTAAGTGATGTACCTATTAAAGTT GGTGCCTTGTGTGTGTTTCTTTTACCTGTGGACGAAAAAAGGTATGGTAT ATTTTCTGTGTGTTTCTTGCATTTATATTTGCTGGAATGTATGATTCTTC TTCCCGTGGGCGACAAAGGGTAAGTCTATTGCTTATGCTGCCGGTGTGTT TGTGTTTTCTCCTCCCATAACGAATAAAAGTGTATTTGATTGCTTCCATG ATTGCCGGTGTGCGCGTGTTTCTCTTCTCGTTGACGAAAAAAGGCATACC TAGTATTTGACTGCTTGTATTGCTGGTGTGTGTATTTCCTCTTTCCGTTG ACGAAAAAAGGTAAAGCCTTTTGCTTGTGCTGCTGGCATGTTTATGTTTC TTCTTCCCGTCGACGAAAAATGGTACTTCTGTTTGATTGCTTACAACAAT ATTGCTGGTACGCGTGTTTTTCTCTTCCCGTGGACGAAAAAAGGTATCGT GGAGGTGGACCCGGACATGAAGATGTTCTTCCGCGTGTCCAAGTTCCTCA ACAAGCGTTTCGGGGTCGTGCCCCCCGAGAAGATCAGGTCCTTCTACGAC GACTACCACCGCTACCTCAGGTCCCAGGGAGTGCACGGGGTTAAGGTCGA CGCGCAATCGGTGGTGAGTTGAGGGAAAGTGATTACTGCTGTACAACCGA AAACAGTGCAGTCATTGGTGGGTTGAGAGAAAACGTCTACGGAAGTCAAC CGTTGTCGCCGAAGCATTGAAAGATGCGAGTTTTCCGACATTGTTCTTTT TCTTTTTTGCGGGTAACAACGGTTCGGGCCCTTTCTATGGTTCAACATGG CTGTTCAACAGCAAGGCTATTTCGCGGGTAGAGATTGGGTTCGAAGCAAC AAAATGAAAGAGCATCAATCGAAATAGCGATGAAGATCGTCTTTCAGTGA TGGCTCCTTTTTCGGACACAACACATGTTTTGACGACAACACATGCTGCC ATTTTTTTTTCTTCGTTTTCGCCCTAATTGTTGCTGTGCCTTTGCTCTTC TCCGTCCCTACTGTCAACAGGTAAACTTTTTGGGTCCGGGGAACGGGGGC AGCGTGATGCTCTCTAGGGCGTTCCACACCGCCCTGAGCAAGAGCGTGAG GAAGTACTTTTCCGACAGCGACGGGGAGAAGGGGGAGGGTGGCCGCATCA TCCACTGCATGTGCCACGACAGCGAGATTCTCTTGCAGGTTCGTCGGTTA GTCTAGTGGTGCTAATGGCTGTTGTTATTATTGTTGTTGTTGTTGTTGTT GTTTTCACAACCAAAAAGTAATGCGGTCTGCTAGGTACCTTTCGACACAT CTGTTGATCGGTTGCTGGTGCTTTTTCGTTGTTGTTGATGTTGCTGTTAT GGCGCTGTTGGCGGTTGTCTTCACGTGACAAACGGGTCTCTGCTAGGTAC TTCGAAGTACCTTTCGAAAACGCCTGTTGAACCGGTTGCTTGTGCTACTG GTTGTTGTTGTTGCCTTCACATCAAGAACTGATCCAGCCTCTGCTATGTT ATAATAGGCACCTTTCAAAACATTTGTTGACTGGTCCAACTGACGGGGAC AGACCCGCTGGTCATAGGCCTTCTACCCCAAAACGGGGCAAGTACACCAT TCGAAAACTATCGAGAAAGTTCCCAGATCACAGAAAAATCAAATGCATAA CTATTTCCAATTTACACACGATCGGAAAGCTTTGCAAATTCATGTTCCTC CCTGCTTGCCATTCTGAGTCACCTTTGGTGACGTAGGAAGGGACGCATCG GCTGTCGGTCCTGTTGGAACACTGCTCCGTTTTCTCGAGGACGCGTGGTC AATGGTCTAACAACTAAGGCATGCGAGATATGAGTAACCTCCCCGCCCCT GTCTGCCATACCCTCTCCCCTCCCTCACCTTGTCTCCAGCTCCCAGCTTG CTATGGGCGACAACCCGTCATCCGCGGTTCGGACGACTTCTACCCGAGAG ACAAGGGGAGCCACAGCCCGCACATCTACGCCAACGCGTTCAACAGCCTC ATGATCAGCAGCTGTGGCCTGCAGGTGCTGTTTCCTCGGCTGTTTCCGGT GATGCTAGAAGTGGCGGTTGTCGATTGGTTGGGGGATTTTGCTAACGTTT CTGTTTGATGGGGCAACCTTTTTTGTGTATTGCTTGTCGTCGCGTTTGTT GTTATTTTCTGTTGCTTTGTATCGATGCTGCGGTCATTCATTTTGCTGGG GACGGTGGCGAAGTCATCGTCGCCGGGCCGTACCCTGCGTGGTGGTGGTG GTCTGAGATGATGCGGCTTATTCACGTACGGTTCGCGAGAACTTGCACCA TTCGAAGGGTGCCGGTGTGTAGTGTGCTTGATGACGTACGTGCGATGTTC GTTCTCTTGCTTGTTGTAAGCTTTGGCCTTTGCGAACCAGATGGATGAAA AGCTCTAGTCATACTTCCCCAGTCACGCCACTGTATCCCATAAGCACGTT GGTGCGTGTCTTTGCTGACTTAATCGTTTTTTTTCAAGATGACGTTGTCT CGCACGCTGCGTTGGTTAGGTCGCCCTGTACATATTTGTCCGGCCCCGAG ATACAGTCAAGTCTTGGGCGAGCTCCCTCTCCTCACCATCGACCTTCTTC TTTTTCCGACTGTGTGACTTATCGGTGGCATATCGTCAATCGTGCTAAAG CTGCAGACAGCAGCCAAGCCTTAGTTACCAGGCCCAGTATTAACGCGGTT CGACAACTCTAAATCACGACCAAGCTCCGATCGGTTCAAGACAGACGAAA AAAGATGGGGTTCCAGCAGGGCTCGATTTTGATTTCTTAGAACCGTACCA AACACTGCTGGTGTTGTTGTTTTTCGCCAGGACTGGGATATGTTCCAGAC GAACATCGGAGACGCGAGCTGGATGCACGCGGCTTCCCGAGCGGTCAGCG GAGGGCCGGTGTACATTAGCGACAGACCAGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17170:416..3650+

>mRNA_Ecto-sp13_S_contig17170.5082.1 ID=mRNA_Ecto-sp13_S_contig17170.5082.1|Name=mRNA_Ecto-sp13_S_contig17170.5082.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17170:416..3650+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGACAGGCCCAAGAGGAGTTCGGCATCGACTACTTTTTGGTCTGGCACGC
CATCGCCGGGTACTGGGCAGGAGTAGACCTGGACTCCCCGGACTTGGTTA
AGTACAAGCCGCGCCGGGCTTTGCTTAACCGGCCACCTGGTATCGTGGAG
GTGGACCCGGACATGAAGATGTTCTTCCGCGTGTCCAAGTTCCTCAACAA
GCGTTTCGGGGTCGTGCCCCCCGAGAAGATCAGGTCCTTCTACGACGACT
ACCACCGCTACCTCAGGTCCCAGGGAGTGCACGGGGTTAAGGTCGACGCG
CAATCGGTGGTAAACTTTTTGGGTCCGGGGAACGGGGGCAGCGTGATGCT
CTCTAGGGCGTTCCACACCGCCCTGAGCAAGAGCGTGAGGAAGTACTTTT
CCGACAGCGACGGGGAGAAGGGGGAGGGTGGCCGCATCATCCACTGCATG
TGCCACGACAGCGAGATTCTCTTGCAGCTCCCAGCTTGCTATGGGCGACA
ACCCGTCATCCGCGGTTCGGACGACTTCTACCCGAGAGACAAGGGGAGCC
ACAGCCCGCACATCTACGCCAACGCGTTCAACAGCCTCATGATCAGCAGC
TGTGGCCTGCAGGACTGGGATATGTTCCAGACGAACATCGGAGACGCGAG
CTGGATGCACGCGGCTTCCCGAGCGGTCAGCGGAGGGCCGGTGTACATTA
GCGACAGACCAGGGTAG
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