mRNA_Ecto-sp13_S_contig17168.5080.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17168.5080.1
Unique NamemRNA_Ecto-sp13_S_contig17168.5080.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A6H5LBY7_9PHAE (Fe/B12 periplasmic-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LBY7_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 6.400e-149
Identity = 221/243 (90.95%), Postives = 225/243 (92.59%), Query Frame = 3
Query:  408 INQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHEWWRELRAVKDGKV 1136
            ++QEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPM LSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGF EEGIAEARRLEAGFDKIRSVVAKLESTL TA              GV GVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGM+RNRAKSDGEQMWRH+WWRELRAVKDGKV
Sbjct:   63 MSQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMVLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFAEEGIAEARRLEAGFDKIRSVVAKLESTLATAXXXXXXXXXXXXXXGVVGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMDRNRAKSDGEQMWRHDWWRELRAVKDGKV 305          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A835YMX1_9STRA (Periplasmic binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 8.710e-67
Identity = 116/243 (47.74%), Postives = 156/243 (64.20%), Query Frame = 3
Query:  408 INQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHEWWRELRAVKDGKV 1136
            + Q EID+RV+GS+ +GHSLYG+D+ +L+ ADPTVV TQALCDVCA S+P+ +  CARVLGD+PR++SIEP  +++VI SVR VGRE G  EE    AR LEAGF+KI+                          A V+G+     SS   +     L   +PLFNGGHWVPDL+  AG +Y +A+   +S+ ++ + L   D DIILVAPCG +  RA  D + +W+H+WW +LRAV+DGKV
Sbjct:   59 LTQAEIDKRVKGSLAVGHSLYGIDQDKLREADPTVVLTQALCDVCAVSYPIVVGVCARVLGDHPRVISIEPTCLSDVIASVRTVGRECGAEEEADEVARGLEAGFEKIK--------------------------AAVKGLPRPKPSSCNVRDSCNLL-LADPLFNGGHWVPDLLDIAGADYRLAKTKERSIQITPETLAASDPDIILVAPCGFDSTRAHDDAQHLWQHDWWTQLRAVRDGKV 274          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A7R9WK88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WK88_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.390e-43
Identity = 95/255 (37.25%), Postives = 141/255 (55.29%), Query Frame = 3
Query:  408 INQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVL-------GDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDK-IRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHE----WWRELRAVKDGKV 1136
            ++Q+EI  RV G++R G SLY LDE  LK   PT +FTQ+LCD+CA S P+  +TCAR+         D  +IVS+EP S+ +V +++R+ GR  G      A+A  +  G+ K ++ V   +E  L T                         ++  KK KVAFLEW EP   GGHW+ D++  AGG YT+ + G +S  ++ ++L+ Y+ D+IL+ PCG +  RA +D   +  H      W+ LRAV+D KV
Sbjct:   42 LSQDEIHLRVSGALRKGDSLYALDEEALKLIKPTHIFTQSLCDICAVSAPLVNNTCARIFPTKQEDGSDKTKIVSLEPQSLNDVWETIRVAGRVLGVE----AKAEEMIGGYVKDLQEVQTIVEGYLKT-------------------------NAHIKKPKVAFLEWHEPFVTGGHWIADMMEIAGGRYTLNKTGCRSECITDEQLVQYNPDVILIGPCGFSVERATNDTLPLLNHSKRGPLWKNLRAVQDEKV 267          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A7S4KA17_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KA17_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.040e-39
Identity = 88/262 (33.59%), Postives = 140/262 (53.44%), Query Frame = 3
Query:  402 FCINQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGD---------------NPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTM-AEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHE-WWRELRAVKDGKV 1136
            + ++Q EI+ RV GS+R G SLYGL+   L+   PT++FTQ+LCDVCA S+P+ +  CA++LG                NP+++S+EP ++ E + +  +     G T+     ARR E     IR+ +  + +  D         G P                   + +VAFLEW +P+F GGHW+PD++  AG EY    + G +S+G++ +  +++D D IL+ PCG    R   D  Q+ R + WW+E+ AV++G V
Sbjct:   87 YSMSQSEINERVCGSLRNGQSLYGLNGTALREICPTIIFTQSLCDVCAVSYPVVIDACAKLLGGGEXXXXXXXXDGERLNPKVISMEPTTLKETLRTFHVAAEAVGLTDA----ARRAEEITSHIRAGLETIRNAAD---------GRP-------------------RPRVAFLEWHDPIFAGGHWIPDMLDMAGAEYVFPVKSGERSVGVADEHFVEFDPDFILIGPCGFGLERTVKDTLQLARTKPWWKEMSAVREGNV 316          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A7S3CDK3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CDK3_9CHLO)

HSP 1 Score: 145 bits (366), Expect = 6.940e-37
Identity = 80/214 (37.38%), Postives = 123/214 (57.48%), Query Frame = 3
Query:  414 QEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNP-RIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMN 1052
            Q+EI+  V  S+   HSLY L E  L+   PT V TQ+LCDVCA +F    S C+R+L D P +++S+EP ++ +V +S+ LVG   G + E I      +A   +  +  A +E+ ++                  E ++ GG     +K +VA LEW EP+F GGHW+ ++V AAGG Y++A+ G +S  MS +EL +YD D+I++A CG +
Sbjct:   81 QKEINDAVIESLAQNHSLYALKEDSLRPLAPTHVLTQSLCDVCAVAFEQVKSKCSRLLADKPYKLLSVEPSTLQDVRESITLVGNNLGASREAI------DAALKRFDTKKAAIEAAVE------------------EHLSQGGG----EKPRVAVLEWCEPMFTGGHWIQEMVEAAGGSYSLAKKGERSRVMSQEELKEYDPDVIVMAFCGFD 266          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A7S4V8M0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8M0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 6.500e-35
Identity = 96/260 (36.92%), Postives = 141/260 (54.23%), Query Frame = 3
Query:  408 INQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEA----RRLEAGFD-KIRSVVAK-LESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVP---------KKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTM-AEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMW-RHEWWRELRAVKDGKV 1136
            + Q EI   V GS+  G SLYG+++G L+   P ++FTQ+LCDVCA S+P+ LSTCA++LG          G  A V +S      E G  E+G +      +    G D K+ S+  + L+ TLDT    A A+GSP        V     S +          KK +VAF+EW +P+F GGHW+ D++  A G+Y M  E   +S+ MS ++ +  D D+IL+ PCG +  R   D  +++   +WW  LRAVK+G+V
Sbjct:   45 MTQSEIHEAVCGSLTNGQSLYGINKGVLQDVKPDIIFTQSLCDVCAVSYPVVLSTCAKLLG----------GPKANVEES-----DEKGVVEKGSSSCHLSLKDTTTGLDPKVISMEPENLKDTLDTFHVAAKAIGSPEVIKRANEVTSSIESGLNRIRQAVKGCKKPRVAFIEWHDPIFCGGHWIVDMLDIARGDYVMPVEYAGRSIAMSNEDFIKLDPDVILIGPCGFDLARTVKDTIEIFGTKDWWLNLRAVKEGRV 289          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A7C2DJX0_9FIRM (Cobalamin-binding protein n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A7C2DJX0_9FIRM)

HSP 1 Score: 137 bits (345), Expect = 2.400e-33
Identity = 81/238 (34.03%), Postives = 124/238 (52.10%), Query Frame = 3
Query:  423 IDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHEWWRELRAVKDGKV 1136
            I+  +RG +  G S+Y LD   L A  PT++ TQ LC VCAPS+ + +   AR+L    R+VS+EP ++AEV++++RLVG  TG      A A  L AG + +R+ VA                G P                   + +VA LEWL+PL+  GHWVP++V AAGGE  +  PG  +  +S   +     +++++ PCG +  R + +   + R   W E+ AV+ G+V
Sbjct:   59 IEETIRGQVHRGLSVYHLDADTLAALRPTLILTQELCRVCAPSYTL-VREAARILEGEVRLVSLEPRTLAEVLETIRLVGELTGRQGRAEALAAGLRAGLETVRAQVA----------------GRP-------------------RPRVACLEWLDPLYAAGHWVPEMVAAAGGEDVLGRPGEHARVVSWDAVRAAAPEVLVLMPCGFDVPRTRRETALVARRAGWGEVPAVRAGRV 260          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A897MLV9_9EURY (ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Natranaeroarchaeum sulfidigenum TaxID=2784880 RepID=A0A897MLV9_9EURY)

HSP 1 Score: 136 bits (342), Expect = 5.020e-33
Identity = 72/239 (30.13%), Postives = 117/239 (48.95%), Query Frame = 3
Query:  420 EIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHEWWRELRAVKDGKV 1136
            EID +V  +      +YG+D   L  ADP ++ TQ +CDVCA    +       +  D P +++ +P SV +V+D +R VG  TG  E        LEA  +++R+  A+                                  V ++ +VA L+WL+P+   GHW+P+LV  AGGEY +A+ G +S      ++++YD D+++ APCG +  +   +   +     W ELRAV+ G+V
Sbjct:   53 EIDAQVLEAEAEHGGVYGIDVDALDRADPDLIVTQGICDVCAVDEVLVADAIEEIEAD-PEVLTTDPHSVGDVLDDIRTVGAATGREERAAELVTDLEARIERVRAATAE----------------------------------VKERPEVAILDWLDPVMVAGHWMPELVEWAGGEYGLADNGQRSTPREWSQIIEYDPDVLIAAPCGFDLEQTSENQSDLTERSGWAELRAVETGRV 256          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A1F5UX47_FRAXR (Fe/B12 periplasmic-binding domain-containing protein n=1 Tax=Fraserbacteria sp. (strain RBG_16_55_9) TaxID=1817864 RepID=A0A1F5UX47_FRAXR)

HSP 1 Score: 135 bits (341), Expect = 6.820e-33
Identity = 82/239 (34.31%), Postives = 128/239 (53.56%), Query Frame = 3
Query:  420 EIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHEWWRELRAVKDGKV 1136
            EID+ VR  +  G S+Y LD+ +LK   P ++ TQ LC+VCAPSF   +   A++L   PRIVS+EP  + EV+++VRLVG     T+ G A+A +L A   K+R  +  ++  ++ A                            +   V  LEWLEPLF  GHWVP+++  AGGE +++ PG  S  +   ++  +D +++++ PCG        + + +  HE W ELRA K+ +V
Sbjct:   55 EIDQMVRELLHNGLSVYHLDKEKLKELRPDLILTQELCEVCAPSFGEVIQA-AKILDIEPRIVSLEPTCLDEVLETVRLVGE---LTKRG-AQAEKLIA---KLRKRIEHVQHVVEQA---------------------------EEHPHVVALEWLEPLFIAGHWVPEIIELAGGE-SLSTPGEPSYEIDWDDVEHFDPELLVLMPCGFTPQHTMQELDILLSHEGWEELRAAKNEQV 257          
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Match: A0A401YSU2_9ACTN (Fe/B12 periplasmic-binding domain-containing protein n=2 Tax=Embleya TaxID=2699295 RepID=A0A401YSU2_9ACTN)

HSP 1 Score: 135 bits (339), Expect = 1.570e-32
Identity = 84/243 (34.57%), Postives = 116/243 (47.74%), Query Frame = 3
Query:  408 INQEEIDRRVRGSMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGDNPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVVAKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLEPLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPCGMNRNRAKSDGEQMWRHEWWRELRAVKDGKV 1136
            ++  EI   V G+   G SLY LD  RL    P VV TQ LCDVCA S+   +S   RVL   PR+VS+EP ++ +V+D++  VG   G  +   A  R L A    + + VA                G P                   K +VA +EWL+PL+  GHWVP+ +  AGGE  +A PG  +  M    + D   D+ILV PCG    R +S+   +     W +L AV+ G+V
Sbjct:   53 LSSREISEAVGGAAHRGSSLYTLDAERLAELAPDVVLTQDLCDVCAVSYTA-VSETVRVLDAGPRVVSLEPRTLPDVLDTLTHVGAVLGVQDVAAARLRELRARMAAVTAAVA----------------GRP-------------------KPRVAAVEWLDPLWPAGHWVPEQIGLAGGEPLLAAPGEHTKAMEWAAVRDTRPDVILVLPCGFAPERTESEASLLTSLPGWSDLPAVRSGRV 259          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17168.5080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBY7_9PHAE6.400e-14990.95Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A835YMX1_9STRA8.710e-6747.74Periplasmic binding protein n=1 Tax=Tribonema minu... [more]
A0A7R9WK88_9STRA1.390e-4337.25Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4KA17_9STRA1.040e-3933.59Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3CDK3_9CHLO6.940e-3737.38Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A7S4V8M0_9STRA6.500e-3536.92Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7C2DJX0_9FIRM2.400e-3334.03Cobalamin-binding protein n=1 Tax=Firmicutes bacte... [more]
A0A897MLV9_9EURY5.020e-3330.13ABC-type Fe3+-hydroxamate transport system, peripl... [more]
A0A1F5UX47_FRAXR6.820e-3334.31Fe/B12 periplasmic-binding domain-containing prote... [more]
A0A401YSU2_9ACTN1.570e-3234.57Fe/B12 periplasmic-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17168contigEcto-sp13_S_contig17168:91..3087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score439.1
Seed ortholog evalue1.9e-120
Seed eggNOG ortholog2880.D8LBW6
Preferred nameC1orf53
Model size1331
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2CTC6@1,2S4BH@2759
Ec32 ortholog descriptionABC transporter periplasmic binding domain
Ec32 orthologEc-20_003540.1
Cds size1038
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.8692198-UTR-Ecto-sp13_S_contig17168:90..3831681462897.8692198-UTR-Ecto-sp13_S_contig17168:90..383Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17168 91..383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.8825316-CDS-Ecto-sp13_S_contig17168:383..6151681462897.8825316-CDS-Ecto-sp13_S_contig17168:383..615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17168 384..615 +
1681462897.8925102-CDS-Ecto-sp13_S_contig17168:1314..14121681462897.8925102-CDS-Ecto-sp13_S_contig17168:1314..1412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17168 1315..1412 +
1681462897.9024475-CDS-Ecto-sp13_S_contig17168:2024..23701681462897.9024475-CDS-Ecto-sp13_S_contig17168:2024..2370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17168 2025..2370 +
1681462897.9121704-CDS-Ecto-sp13_S_contig17168:2725..30871681462897.9121704-CDS-Ecto-sp13_S_contig17168:2725..3087Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17168 2726..3087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17168.5080.1prot_Ecto-sp13_S_contig17168.5080.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17168 384..3087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17168.5080.1

>prot_Ecto-sp13_S_contig17168.5080.1 ID=prot_Ecto-sp13_S_contig17168.5080.1|Name=mRNA_Ecto-sp13_S_contig17168.5080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=346bp
MDRHLHSPMATLPAMLALLKNPASHVAESHLCYTTLFCINQEEIDRRVRG
SMRMGHSLYGLDEGRLKAADPTVVFTQALCDVCAPSFPMFLSTCARVLGD
NPRIVSIEPGSVAEVIDSVRLVGRETGFTEEGIAEARRLEAGFDKIRSVV
AKLESTLDTAAPPAAALGSPGTAAGVEGVAPGGASSVPKKQKVAFLEWLE
PLFNGGHWVPDLVRAAGGEYTMAEPGNKSMGMSAKELMDYDADIILVAPC
GMNRNRAKSDGEQMWRHEWWRELRAVKDGKVCRRLHRIPHTPDRLSKLDY
STEMAVPKIMALDRKCRRELSENVIICMLHVVEQCCRTLEIRPGVC
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mRNA from alignment at Ecto-sp13_S_contig17168:91..3087+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17168.5080.1 ID=mRNA_Ecto-sp13_S_contig17168.5080.1|Name=mRNA_Ecto-sp13_S_contig17168.5080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17168:91..3087+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGACCACCCTCCAGCCGTGGTTGCGAGGTGCGAGCGGGTCACGAATT CGGAGATCAACCCTCACAAGATGTCTCAGGTACGCGTGCTTAGTATGTAA TCAGCAAAATTTCGCGACTTTTCCATAGTCGGGGTTTGCTCCTCCTCAAA GCCTTCGCCGGTCCTATTTCCCCCTCCCTTCGTGGTGGAGGGTTTCGGGG TCAAAAGCTCACCCGCTTTCGTCTTTTGAGGGTTTCAACCCCACATATGA CGTGGAGAGAATCGCCGGTATAAAGACACCGCAATGTGAGGTGATGGACC GACATCTCCATTCTCCGATGGCGACACTGCCTGCCATGTTGGCTCTATTG AAAAACCCGGCGTCTCATGTTGCTGAGAGCCACTTGTGCTACACAACTTT ATTTTGCATCAATCAGGAAGAGATCGACCGCCGCGTTCGGGGATCCATGA GGATGGGGCACAGCCTGTACGGGCTCGATGAGGGCCGTCTCAAGGCCGCT GATCCCACCGTCGTATTCACGCAAGGTGCACTACAGCAGTATGTTGAAAC CACCAACATTGCAGGCCCACAAAACAAACCATTCAGCGGTGCACACCATG TCTCCCATTGCCATCTGCTACGCCAGCGCCGGCATTTTTGCCGGACACGG ACGTTGATCACGGTTCAAGGTTACGGTATTCTCCCCTCGCCTGTCCCGAG CGTTCGAAGCTCCCGGGCAAGCATTTGACCGGCACTTGATCGAGTTTAAC GCCCCTGTCCCGAACGAGAAAAGTCGTGGTGTAGCTGATGTGACACACGC GTCCCGGTCAGTCACCTCCTGTTGGCGCCAAATACCATGGCGCACACCCC GGCCGCTGTCAATCCAATGTCTCTTGGTGTCATGCATCCCATCCAGAGCG CCGCTCAAATGTTGCTCAGAGCCAGCCCCGTTAAGAGCACCTATGCACAC AGTTCTCGACGCATGCGCGCCTCGCCGTTGTGTTATAGCGGAAAACGCCA CCTACGCTGTGGCATGAAAGATTGGCCGTCGCGGCATGTTTGTTACAATG CCCGGCCCGTTTGTACAATTTCTTGTGCGTCACGAACATTGTCGTGGAGC GTATTCGGGGTGTTGTAACGATTGGTGGAATCGCGAATACACAAACACCC TGTTTGAAATCATGCATTCATTTTCCAGACCCCCACCTCCGCCCCAACCA TTCCGCCTCCTTGTCTACCGGCAGCTCTGTGCGACGTCTGCGCTCCATCC TTTCCGATGTTTCTCAGCACCTGCGCTAGAGTTCTCGGCGATAACCCTAG GATCGTATCCATCGAACCGGGGGTGAGTGACCGAACCCATGCTACTGCCG CTCTTCCCTCGTCATCACTAGCTCAGGTTCCATCATCAAAGTTGCCCCAG CATGGTGGACTGCAGCAGCGGCATTGTCCATGAGTGATAAGAGTTTCGAG GGGATGTATGTTAGGCGGCATTACGTGTATATCTTGGGCCCCGTACAGTA CGTTCGTTTTGCAGCTCCGTATCGCCGTAGTTTTAGTCCAAGCTTGACAT GCACCAGTTCCCCCGCCTGTGCTTGTGGGGAAAACAAGCTTTCGGCACCA CACGAAGGGAGCCGTTCCGCGTATTCTTTGACCGGAATCCCATAAGTTTC CACCGATCTTAGCTGGCTCCCTCCCTTCCCCGGCCTTTTGCCCGTTTGAG TCATGCTTGCGCCACCTCTAGCCCGGCCCAAGGTCCAAGACAAAGGTTGT TTTGGACTTGATTCGATTGGCGGTGTTAATAAATGACACTGACCGAACAT AGAGGAGGAATAGAAATAAAGCGTGGCCGCAACCCTTTGCTGTGCTCTCA ATATTGGATTTTCCTTTCTCCCTTGACCTTTGTAACTATGTCTTTTGTGC CGGCCCCCATCCGTCAATTTGTTCACCCTTACAGAGCGTCGCGGAAGTGA TCGATTCCGTTCGTCTTGTTGGGCGCGAGACCGGTTTCACGGAAGAGGGC ATCGCCGAAGCCAGACGTCTAGAGGCCGGCTTCGACAAAATCAGATCGGT CGTCGCAAAACTGGAAAGCACCCTTGACACGGCGGCGCCGCCGGCGGCGG CCCTGGGGTCTCCAGGAACGGCGGCCGGGGTAGAGGGGGTGGCTCCCGGT GGGGCTAGTTCTGTCCCCAAGAAGCAGAAGGTGGCGTTTTTAGAGTGGCT GGAGCCTCTCTTTAACGGAGGCCACTGGGTGCCGGATCTCGTGCGGGCGG CGGGGGGCGAGTACACGATGGCAGAACCCGGTGAGATAGAAAGGGTTGAA GCGAGAGTAGCTTCGGGCGGCAAGGTACTCCCGCGACCGAACATGTAGCT TGTCTAGGTTTGGCTTGGACTGTCTGGGGTATGGGGTCAAGTGCATGTGC TTGTCCTTGTTGTTTTTGGGTGCGTCTTCGCAGTGTCCATCCCTTACCTC TCCTGCCTTTTCCGCAAGCCCACTAACTATTGTCTTGTTGGAGAGGTGGG CACTTTTGGCTGGCTGACATCTTTTACTGAAAATAACGTCACAAAATGAC GTTTTCGTTTCCAATCCCTTGTCGCACCGATGATGCGCACGCGCCCCCCC TCCTCCGTGGGAAACGAACATGCGGATTGGAAAAGGCAACAAGAGCATGG GCATGTCGGCGAAAGAGCTGATGGACTACGACGCCGACATCATCCTAGTC GCTCCCTGCGGCATGAACCGGAACCGAGCCAAGTCCGACGGGGAGCAGAT GTGGCGCCACGAATGGTGGCGGGAGCTTAGAGCGGTCAAGGATGGGAAGG TATGCCGTAGATTGCATAGAATACCACACACCCCGGACCGTTTGTCAAAG CTCGATTACTCCACAGAAATGGCGGTGCCGAAAATTATGGCGTTGGATAG GAAGTGTCGTCGAGAGCTTTCCGAAAACGTTATCATTTGCATGCTGCATG TCGTGGAGCAATGTTGTCGAACTTTGGAAATCCGTCCGGGAGTGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17168:91..3087+

>mRNA_Ecto-sp13_S_contig17168.5080.1 ID=mRNA_Ecto-sp13_S_contig17168.5080.1|Name=mRNA_Ecto-sp13_S_contig17168.5080.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17168:91..3087+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCGACATCTCCATTCTCCGATGGCGACACTGCCTGCCATGTTGGC
TCTATTGAAAAACCCGGCGTCTCATGTTGCTGAGAGCCACTTGTGCTACA
CAACTTTATTTTGCATCAATCAGGAAGAGATCGACCGCCGCGTTCGGGGA
TCCATGAGGATGGGGCACAGCCTGTACGGGCTCGATGAGGGCCGTCTCAA
GGCCGCTGATCCCACCGTCGTATTCACGCAAGCTCTGTGCGACGTCTGCG
CTCCATCCTTTCCGATGTTTCTCAGCACCTGCGCTAGAGTTCTCGGCGAT
AACCCTAGGATCGTATCCATCGAACCGGGGAGCGTCGCGGAAGTGATCGA
TTCCGTTCGTCTTGTTGGGCGCGAGACCGGTTTCACGGAAGAGGGCATCG
CCGAAGCCAGACGTCTAGAGGCCGGCTTCGACAAAATCAGATCGGTCGTC
GCAAAACTGGAAAGCACCCTTGACACGGCGGCGCCGCCGGCGGCGGCCCT
GGGGTCTCCAGGAACGGCGGCCGGGGTAGAGGGGGTGGCTCCCGGTGGGG
CTAGTTCTGTCCCCAAGAAGCAGAAGGTGGCGTTTTTAGAGTGGCTGGAG
CCTCTCTTTAACGGAGGCCACTGGGTGCCGGATCTCGTGCGGGCGGCGGG
GGGCGAGTACACGATGGCAGAACCCGGCAACAAGAGCATGGGCATGTCGG
CGAAAGAGCTGATGGACTACGACGCCGACATCATCCTAGTCGCTCCCTGC
GGCATGAACCGGAACCGAGCCAAGTCCGACGGGGAGCAGATGTGGCGCCA
CGAATGGTGGCGGGAGCTTAGAGCGGTCAAGGATGGGAAGGTATGCCGTA
GATTGCATAGAATACCACACACCCCGGACCGTTTGTCAAAGCTCGATTAC
TCCACAGAAATGGCGGTGCCGAAAATTATGGCGTTGGATAGGAAGTGTCG
TCGAGAGCTTTCCGAAAACGTTATCATTTGCATGCTGCATGTCGTGGAGC
AATGTTGTCGAACTTTGGAAATCCGTCCGGGAGTGTGT
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