mRNA_Ecto-sp13_S_contig17150.5075.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17150.5075.1
Unique NamemRNA_Ecto-sp13_S_contig17150.5075.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: A0A6H5KSA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA9_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.990e-36
Identity = 100/119 (84.03%), Postives = 108/119 (90.76%), Query Frame = 1
Query:    1 MASPPAAQRCTPSRYDTDVHTAAFDDDDELMDTLLSNGSSADIDRRRNPQGWTPLMVAAGEGHSKVVGILLNKGADMSVVNDLGSXXXXXXXXXXXXXXXXXXXXXXXNLEAGELNGGW 357
            MASPPAAQRC P  Y+TD+H AAFD+DDELMDTLLS+GS ADIDRR NP+GWTPLMV AGEGHS+VVGILLNKGAD+SVVNDLGSXXXXXXXXXXXXXXXXXXXXXXX LEA +L  GW
Sbjct:   26 MASPPAAQRCIPGGYNTDLHAAAFDNDDELMDTLLSSGS-ADIDRRGNPRGWTPLMVTAGEGHSQVVGILLNKGADLSVVNDLGSXXXXXXXXXXXXXXXXXXXXXXXXLEAADLTAGW 143          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: D7FYA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA6_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.860e-31
Identity = 99/135 (73.33%), Postives = 106/135 (78.52%), Query Frame = 1
Query:    1 MASPPAAQRCTPSRYDTDVHTAAFDDDDELMDTLLSNGSSADIDRRRNPQGWTPLMVAAGEGHSKVVGILLNKGADMSVVNDLGSXXXXXXXXXXXXXXXXXXXXXXXNLEAGELNGGWNRS*WLPTRATRKFLG 405
            MASPPAAQ CTP  Y+T +H AA D+DDELM TLLS+GS ADIDRR NP GWTPLMVAAGEGHS+VVGILLNKGAD+SVVND   XXXXXXXXXXXXXXXXXXXXXXX LEA EL  GW        +   K LG
Sbjct:    1 MASPPAAQPCTPGGYNTGLHAAALDNDDELMHTLLSSGS-ADIDRRGNPLGWTPLMVAAGEGHSQVVGILLNKGADLSVVNDXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAAELTLGWTPVMMAAYQGHSKVLG 134          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 3.650e-8
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  797 VRKLVQQLGIQGCDGASAGANTIRWAIQTEQHDIVVMLADAGVIDTGRVLIDATKFGSEA**KPLAAATGETHGLG 1024
            VR+L+Q+LGI+GCD  SAGA+ + +A   +  DI+ +L +AGV+DTG+ L  A   G EA  K L     +  G G
Sbjct:  294 VRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCG 369          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.160e-7
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  716 ECEPFATCR-DGYSCRWMP---R*SQSTQR*VRKLVQQLGIQGCDGASAGANTIRWAIQTEQHDIVVMLADAGVIDTGRVLIDATKFGSEA 976
            + +P  TC  D    R++P         +  V +L++Q+GI GC G+S G N +R A    + DI+ +L DAGV+DTG  L+ A  +G EA
Sbjct:  171 KADPLLTCASDSGKERFLPLDVAAQNGHREVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEA 261          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: UPI001EE52C1C (probable palmitoyltransferase AKR2 n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE52C1C)

HSP 1 Score: 59.7 bits (143), Expect = 8.610e-7
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1
Query:   55 VHTAAFDDDDELMDTLLSNGSSADIDRRRNPQGWTPLMVAAGEGHSKVVGILLNKGADMSVVNDLG 252
            +H A   D++++++ +LS G  ADID R N QG TP M AA +G+ KVV +L++KG ++SVV++LG
Sbjct:  100 LHVACLGDNEDIVEDVLSRGI-ADIDSRDN-QGRTPAMYAAAKGYKKVVDLLVSKGCNLSVVDNLG 163          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.100e-6
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  797 VRKLVQQLGIQGCDGASAGANTIRWAIQTEQHDIVVMLADAGVIDTGRVLIDATKFGSEA 976
            V++LVQQ+ I+GC GAS G + +R A  ++  D++ +LAD GV+DTG  LI A     EA
Sbjct:  203 VQELVQQVSIKGCGGASGGVDALRLAALSQNVDVMAVLADVGVMDTGEALITAAGRNDEA 262          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.280e-6
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 2
Query:  797 VRKLVQQLGIQGCDGASAGANTIRWAIQTEQHDIVVMLADAGVIDTGRVLIDATKFGSE 973
            VR+L+QQLG++GC G SAG  ++R A   +  DI+ +L   GV+DTGR L+ A ++  E
Sbjct:  196 VRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSRE 254          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: D8LL76_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL76_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 2.950e-6
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 2
Query:  797 VRKLVQQLGIQGCDGASAGANTIRWAIQTEQHDIVVMLADAGVIDTGRVLIDATKFGSEA**KPLAAATGE 1009
             R+LVQ+ GI+GC GASAG + +  A   +  D++ +L DAGV+DTG  L+     G E   K L    GE
Sbjct:  197 ARELVQRFGIRGCAGASAGVDALGQAAVDQHLDVMALLCDAGVVDTGNALVATVFLGRERALKFLLEQKGE 267          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.820e-6
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  797 VRKLVQQLGIQGCDGASAGANTIRWAIQTEQHDIVVMLADAGVIDTGRVLIDATKFGSEA 976
            VR+L++Q+ I+GC GAS G   +R A  ++  D++ +LADAGV+DTG  LI A     EA
Sbjct:  203 VRELIKQVSIKGCGGASGGVYALRLAALSQNVDVMSVLADAGVMDTGEALITAAGRNDEA 262          
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Match: UPI001EE4FC66 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like isoform X2 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE4FC66)

HSP 1 Score: 58.5 bits (140), Expect = 5.370e-6
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   55 VHTAAFDDDDELMDTLLSNGSSADIDRRRNPQGWTPLMVAAGEGHSKVVGILLNKGADMSVVNDLG 252
            +H A   D+ +L++ LLS G  ADI+ + +  G TP+M AA +GH KVV +L++KG ++SVV+DLG
Sbjct:   98 LHAACLSDNVDLVEDLLSRGI-ADIESK-DKNGATPVMYAAEQGHKKVVDLLVSKGCNLSVVDDLG 161          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17150.5075.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KSA9_9PHAE2.990e-3684.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYA6_ECTSI1.860e-3173.33Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FT11_ECTSI3.650e-843.42EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KQV0_9PHAE3.160e-737.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001EE52C1C8.610e-746.97probable palmitoyltransferase AKR2 n=1 Tax=Halioti... [more]
D8LNF8_ECTSI1.100e-646.67EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1U9_ECTSI1.280e-645.76EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LL76_ECTSI2.950e-642.25EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JL33_9PHAE3.820e-646.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001EE4FC665.370e-646.97serine/threonine-protein phosphatase 6 regulatory ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17150contigEcto-sp13_S_contig17150:2..1152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score133.7
Seed ortholog evalue6.1e-29
Seed eggNOG ortholog2880.D7FYA6
Model size1151
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size369
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.3859658-UTR-Ecto-sp13_S_contig17150:1..7831681462897.3859658-UTR-Ecto-sp13_S_contig17150:1..783Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17150 2..783 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.4175398-CDS-Ecto-sp13_S_contig17150:783..11521681462897.4175398-CDS-Ecto-sp13_S_contig17150:783..1152Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17150 784..1152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17150.5075.1prot_Ecto-sp13_S_contig17150.5075.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17150 784..1152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17150.5075.1

>prot_Ecto-sp13_S_contig17150.5075.1 ID=prot_Ecto-sp13_S_contig17150.5075.1|Name=mRNA_Ecto-sp13_S_contig17150.5075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MASPPAAQRCTPSRYDTDVHTAAFDDDDELMDTLLSNGSSADIDRRRNPQ
GWTPLMVAAGEGHSKVVGILLNKGADMSVVNDLGSTALFISVWFGHVAVT
RMLVNAGANLEAGELNGGWNRS*
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mRNA from alignment at Ecto-sp13_S_contig17150:2..1152-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17150.5075.1 ID=mRNA_Ecto-sp13_S_contig17150.5075.1|Name=mRNA_Ecto-sp13_S_contig17150.5075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17150:2..1152- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGCCGCCTGCCGCGCAGCGGTGTACTCCGAGCAGGTATGATAC TGACGTACACACGGCAGCATTTGACGACGATGATGAGCTCATGGATACCC TACTTTCGAATGGATCATCGGCCGATATTGATCGGCGACGCAATCCACAA GGCTGGACTCCCCTCATGGTCGCTGCCGGTGAGGGTCACTCGAAAGTTGT TGGGATCTTGCTAAACAAGGGAGCGGATATGTCGGTCGTGAACGATTTGG GTTCTACTGCCCTGTTCATCTCTGTTTGGTTTGGGCACGTAGCTGTGACG AGGATGCTCGTGAATGCGGGAGCCAATCTCGAAGCGGGGGAACTAAATGG GGGGTGGAATCGGTCATGATGGCTGCCTACAAGGGCCACTCGAAAATTCT TGGGATCTTGCTGAACAAGGGAGCTGACATGTCGGTAGTGGACAAGCAAG GTACTACTGCTCTGATCCTGTCTGCTGGTTATGGGCACGTGGCTGTGACG ATGATGCTCGTGAATGCCGACGCCGATCTCGACGCGGCGGATTCTGCGGG ATTTACGCCACTTCACATAGCTGCTGTCAACGACCATTCCGAGGTAATCA AAACTTTAGCTAATGCAGGCGCAAACCCAGACAGCCGTACGCCTGCCGGA GAGACACCACTGTTCATGGCAGCGAAAAACGGGCATGTAGGCACCATCAG CGAACTCCTTCGTGCGAATGCGAACCCTTTGCTACCTGCCGGGACGGATA TTCCTGCCGCTGGATGCCGCGGTGATCTCAAAGCACGCAGCGGTAAGTAC GAAAGCTGGTACAGCAACTCGGGATCCAGGGCTGCGACGGTGCAAGTGCC GGCGCAAATACTATAAGATGGGCGATACAGACTGAGCAACATGATATCGT GGTCATGTTGGCGGACGCCGGAGTAATCGACACAGGCAGAGTCCTGATCG ATGCTACGAAATTCGGTAGCGAGGCATAGTGAAAACCTCTTGCAGCAGCA ACGGGGGAAACACATGGACTTGGATACATACGTCAACAAAAAACAACCAG ACGGCAGAACACCAGTGGTGTGTAGCATTGAGCGTGCCCTCCTATCAGGC TCTCCCAGGGTTCTGCGGCTTTTTCTGGACGCCGGTGCTGACACGGCATC G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17150:2..1152-

>mRNA_Ecto-sp13_S_contig17150.5075.1 ID=mRNA_Ecto-sp13_S_contig17150.5075.1|Name=mRNA_Ecto-sp13_S_contig17150.5075.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17150:2..1152- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCTCGCCGCCTGCCGCGCAGCGGTGTACTCCGAGCAGGTATGATAC
TGACGTACACACGGCAGCATTTGACGACGATGATGAGCTCATGGATACCC
TACTTTCGAATGGATCATCGGCCGATATTGATCGGCGACGCAATCCACAA
GGCTGGACTCCCCTCATGGTCGCTGCCGGTGAGGGTCACTCGAAAGTTGT
TGGGATCTTGCTAAACAAGGGAGCGGATATGTCGGTCGTGAACGATTTGG
GTTCTACTGCCCTGTTCATCTCTGTTTGGTTTGGGCACGTAGCTGTGACG
AGGATGCTCGTGAATGCGGGAGCCAATCTCGAAGCGGGGGAACTAAATGG
GGGGTGGAATCGGTCATGA
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