mRNA_Ecto-sp13_S_contig1715.5071.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1715.5071.1
Unique NamemRNA_Ecto-sp13_S_contig1715.5071.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1715.5071.1 vs. uniprot
Match: A0A6H5KPM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPM1_9PHAE)

HSP 1 Score: 757 bits (1954), Expect = 9.970e-274
Identity = 404/452 (89.38%), Postives = 415/452 (91.81%), Query Frame = 1 
Query:    4 EDKQLSVRFSGSVDSGPRIISSSSDDDGESEWEAFDAAFRCKTASTTEPVAMATPARATLARRPFKENQRAASGRARTHPTDSAASSSAEDVRLLAPTRVGLHGRSSSSAGQLAPGYDGNSDHVGGSQRPHRPHQVVGSATSHLHENDFNNKHRTHHQTGAVLQPARRLPLYKHNDLAQATP--------NDTSRAFACSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAMPFATSFTVYGEVVVGRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELAGGGYSLRTSGPGVYAEGFRPANYDDGGSDGGGRSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELELRLRQAAAHGKRAVVSAYRRLANSATATHHRRLPTFSSTAV 1335
            EDKQLSVRFSGSVDSGPRI SSSSDDDGESEWEAFDAAFR KTAS TEP +  TPAR TLARRPFKENQRAASGRARTH T+SAASSSAED+RLLAPTR G HGRSSSSA QLAPGYDG SDH+G SQRPHR HQVVGS TSHLHENDFNNKHRT+HQTGAVLQ ARRLPLY HND AQAT         NDTSRAFA SVLLHGCLCEAPLAVLEGLARGPLYLVA+AWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLA+PFATSFTVYGEVV GRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSEL GGG+SLRTS PGV AEGFRP NYDDGGS GGGRSNKPPSI YVGAIAAQSMDADRMGVG+LHPPEEL+LRLRQAAAHGKRAVVSAYRRLANSA AT+HRRLPTFSS AV
Sbjct:    2 EDKQLSVRFSGSVDSGPRI-SSSSDDDGESEWEAFDAAFRGKTASMTEPASTPTPARVTLARRPFKENQRAASGRARTHRTNSAASSSAEDMRLLAPTRAGFHGRSSSSAEQLAPGYDGESDHIGTSQRPHRHHQVVGSTTSHLHENDFNNKHRTNHQTGAVLQSARRLPLYNHNDYAQATSSSSSPSVLNDTSRAFAWSVLLHGCLCEAPLAVLEGLARGPLYLVASAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVAGRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELTGGGHSLRTSSPGVCAEGFRPTNYDDGGSGGGGRSNKPPSIRYVGAIAAQSMDADRMGVGMLHPPEELKLRLRQAAAHGKRAVVSAYRRLANSAAATYHRRLPTFSSNAV 452
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BLAST of mRNA_Ecto-sp13_S_contig1715.5071.1 vs. uniprot
Match: D8LN07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN07_ECTSI)

HSP 1 Score: 756 bits (1952), Expect = 2.610e-273
Identity = 409/462 (88.53%), Postives = 421/462 (91.13%), Query Frame = 1 
Query:    4 EDKQLSVRFSGSVDSGPRIISSSSDDDGESEWEAFDAAFRCKTASTTEPVAMATPARATLARRPFKENQRAASGRARTHPTDSAASSSAEDVRLLAPTRVGLHGRSSSSAGQLAPGYDGNSDHVGGSQRPHRPHQVVGSATSHLHENDFNNKHRTHH-QTGAVLQPARRLPLYKHNDLAQATPN--------DTSRAFACSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAMPFATSFTVYGEVVVGRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELAGGGYSLRTSGPGVYAEGFRPANYDDGGSDGGGRSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELELRLRQAAAHGKRAVVSAYRRLANSATATHHRRLPTFSSTAVTRPGSMSSG 1362
            EDKQLSVRFSGSVDSGPR  SSSSDDDGESEWEAFDAAFR KTAS T+P A ATP R TLARRPFKENQRAASGRARTH TDSAASSSAED+R+LAPTR GLHG +SS AGQLAPGYDG++DHVG SQRP+R H V GSATSHLHENDFNNK+RTHH QTGAVLQPARRLPLY HND  QATPN        DTSRAF  SVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLA+PFATSFTVYGEVVV RALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSEL GGGY LRT+GPG YAEGFRPANYDDG  DGGGRSNKPPSILYVGAIAAQSMDADRMGVGILHPPEEL LRLRQAAA GKRAVVSAYRRLA SATAT+HRRLPT SSTAVTR G+MSSG
Sbjct:    2 EDKQLSVRFSGSVDSGPR--SSSSDDDGESEWEAFDAAFRGKTASMTDPAATATPGRVTLARRPFKENQRAASGRARTHRTDSAASSSAEDLRVLAPTRAGLHGSNSSPAGQLAPGYDGDNDHVGTSQRPYRHHHVAGSATSHLHENDFNNKYRTHHHQTGAVLQPARRLPLYHHNDATQATPNSSSPSALNDTSRAFVWSVLLHGCLCEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAALAREGLLLLAASLTLAVPFATSFTVYGEVVVDRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELTGGGYGLRTTGPGGYAEGFRPANYDDG--DGGGRSNKPPSILYVGAIAAQSMDADRMGVGILHPPEELGLRLRQAAAQGKRAVVSAYRRLAYSATATYHRRLPTLSSTAVTRLGNMSSG 459
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BLAST of mRNA_Ecto-sp13_S_contig1715.5071.1 vs. uniprot
Match: A0A7S2RB02_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB02_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.160e-5
Identity = 44/124 (35.48%), Postives = 60/124 (48.39%), Query Frame = 1 
Query:  604 EAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLR-------KHAAALAREGLLLLAASLTLAMPFATSFTVYGEVVVGRALDEEEASWDVRPVPTVLGAVDPLRFCVFAFGQAGE 954
            EAPLAV E + R  +YL AA+++ +V+ +     A               +H+ ALARE L          +P   SF VY      R    E   W + P+PTVLG+VDP RF  F+ GQ G+
Sbjct:  185 EAPLAVAEAVCRAIVYLFAASFILVVSGMYYLAEAXXXXXEDEPLWLLSFRHSQALAREALXXXXXXXXXXIP-CCSFFVY------RDFRPEADDWQLSPLPTVLGSVDPRRFVAFSLGQGGD 301
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1715.5071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KPM1_9PHAE9.970e-27489.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN07_ECTSI2.610e-27388.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2RB02_9STRA3.160e-535.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1715contigEcto-sp13_S_contig1715:6821..8185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1365
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000920.1
Cds size1365
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.177058-CDS-Ecto-sp13_S_contig1715:6820..81851681462897.177058-CDS-Ecto-sp13_S_contig1715:6820..8185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1715 6821..8185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1715.5071.1prot_Ecto-sp13_S_contig1715.5071.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1715 6821..8185 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1715.5071.1

>prot_Ecto-sp13_S_contig1715.5071.1 ID=prot_Ecto-sp13_S_contig1715.5071.1|Name=mRNA_Ecto-sp13_S_contig1715.5071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=455bp
QEDKQLSVRFSGSVDSGPRIISSSSDDDGESEWEAFDAAFRCKTASTTEP
VAMATPARATLARRPFKENQRAASGRARTHPTDSAASSSAEDVRLLAPTR
VGLHGRSSSSAGQLAPGYDGNSDHVGGSQRPHRPHQVVGSATSHLHENDF
NNKHRTHHQTGAVLQPARRLPLYKHNDLAQATPNDTSRAFACSVLLHGCL
CEAPLAVLEGLARGPLYLVAAAWVALVASVGASGHAHHHRAGLRKHAAAL
AREGLLLLAASLTLAMPFATSFTVYGEVVVGRALDEEEASWDVRPVPTVL
GAVDPLRFCVFAFGQAGELAANGRPEPLQQPFSELAGGGYSLRTSGPGVY
AEGFRPANYDDGGSDGGGRSNKPPSILYVGAIAAQSMDADRMGVGILHPP
EELELRLRQAAAHGKRAVVSAYRRLANSATATHHRRLPTFSSTAVTRPGS
MSSG*
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mRNA from alignment at Ecto-sp13_S_contig1715:6821..8185+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1715.5071.1 ID=mRNA_Ecto-sp13_S_contig1715.5071.1|Name=mRNA_Ecto-sp13_S_contig1715.5071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:6821..8185+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGACAAACAACTCAGCGTCCGGTTTAGCGGTTCGGTCGACAGCGG
CCCACGCATCATCAGCAGCAGTAGCGACGACGATGGCGAGAGCGAATGGG
AGGCGTTTGATGCTGCTTTCCGATGCAAAACGGCGTCAACGACAGAACCT
GTGGCAATGGCAACGCCAGCACGAGCGACCTTGGCGCGCCGGCCTTTCAA
GGAGAATCAGAGAGCAGCCAGCGGAAGAGCGAGGACACACCCCACCGATA
GTGCTGCAAGTAGCTCTGCGGAAGACGTGCGCCTTCTGGCACCAACGAGG
GTAGGCCTTCACGGAAGGAGCTCTTCTTCAGCAGGGCAGCTTGCACCTGG
CTATGACGGCAACAGCGATCATGTTGGTGGCAGTCAGAGACCTCATCGCC
CCCACCAGGTGGTCGGAAGTGCAACCAGCCACTTGCACGAGAACGACTTC
AACAACAAGCATCGCACTCACCACCAAACCGGGGCCGTTCTACAACCCGC
ACGACGTCTCCCGCTCTACAAACACAACGATTTGGCGCAAGCAACCCCAA
ATGATACGTCGCGTGCTTTTGCGTGCTCCGTGCTCTTGCACGGCTGTCTC
TGCGAAGCCCCTCTCGCTGTGCTCGAAGGCCTCGCCCGAGGCCCGCTGTA
CCTCGTCGCCGCGGCGTGGGTCGCGCTCGTCGCCTCCGTCGGCGCATCCG
GGCACGCCCACCACCACCGCGCCGGGCTCCGGAAGCACGCCGCCGCGCTG
GCGCGAGAGGGGCTCCTCCTCCTCGCGGCATCACTCACCCTGGCCATGCC
CTTCGCGACAAGCTTCACGGTCTACGGCGAGGTGGTTGTAGGCAGGGCTT
TGGACGAGGAGGAGGCGTCGTGGGACGTCCGGCCGGTCCCGACGGTGCTC
GGCGCGGTCGACCCCCTACGGTTCTGCGTGTTCGCCTTCGGGCAGGCAGG
GGAGCTCGCGGCCAACGGCCGGCCGGAGCCCTTGCAACAACCGTTTTCTG
AGCTTGCCGGTGGTGGTTACAGCCTACGCACTTCCGGTCCGGGTGTTTAC
GCGGAGGGTTTCAGACCGGCAAACTACGACGACGGCGGCAGCGACGGCGG
CGGCAGGTCGAACAAGCCGCCTTCCATACTTTACGTTGGAGCCATCGCGG
CGCAATCGATGGACGCCGATCGGATGGGAGTGGGGATACTACATCCCCCC
GAGGAGCTCGAGCTAAGGCTCCGCCAGGCGGCCGCACACGGGAAACGGGC
CGTCGTGTCGGCCTACCGGCGTCTCGCGAACAGCGCGACAGCGACCCATC
ATCGGCGACTTCCGACGTTTAGCAGCACCGCTGTGACAAGGCCGGGAAGT
ATGTCGTCGGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1715:6821..8185+

>mRNA_Ecto-sp13_S_contig1715.5071.1 ID=mRNA_Ecto-sp13_S_contig1715.5071.1|Name=mRNA_Ecto-sp13_S_contig1715.5071.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1715:6821..8185+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGACAAACAACTCAGCGTCCGGTTTAGCGGTTCGGTCGACAGCGG
CCCACGCATCATCAGCAGCAGTAGCGACGACGATGGCGAGAGCGAATGGG
AGGCGTTTGATGCTGCTTTCCGATGCAAAACGGCGTCAACGACAGAACCT
GTGGCAATGGCAACGCCAGCACGAGCGACCTTGGCGCGCCGGCCTTTCAA
GGAGAATCAGAGAGCAGCCAGCGGAAGAGCGAGGACACACCCCACCGATA
GTGCTGCAAGTAGCTCTGCGGAAGACGTGCGCCTTCTGGCACCAACGAGG
GTAGGCCTTCACGGAAGGAGCTCTTCTTCAGCAGGGCAGCTTGCACCTGG
CTATGACGGCAACAGCGATCATGTTGGTGGCAGTCAGAGACCTCATCGCC
CCCACCAGGTGGTCGGAAGTGCAACCAGCCACTTGCACGAGAACGACTTC
AACAACAAGCATCGCACTCACCACCAAACCGGGGCCGTTCTACAACCCGC
ACGACGTCTCCCGCTCTACAAACACAACGATTTGGCGCAAGCAACCCCAA
ATGATACGTCGCGTGCTTTTGCGTGCTCCGTGCTCTTGCACGGCTGTCTC
TGCGAAGCCCCTCTCGCTGTGCTCGAAGGCCTCGCCCGAGGCCCGCTGTA
CCTCGTCGCCGCGGCGTGGGTCGCGCTCGTCGCCTCCGTCGGCGCATCCG
GGCACGCCCACCACCACCGCGCCGGGCTCCGGAAGCACGCCGCCGCGCTG
GCGCGAGAGGGGCTCCTCCTCCTCGCGGCATCACTCACCCTGGCCATGCC
CTTCGCGACAAGCTTCACGGTCTACGGCGAGGTGGTTGTAGGCAGGGCTT
TGGACGAGGAGGAGGCGTCGTGGGACGTCCGGCCGGTCCCGACGGTGCTC
GGCGCGGTCGACCCCCTACGGTTCTGCGTGTTCGCCTTCGGGCAGGCAGG
GGAGCTCGCGGCCAACGGCCGGCCGGAGCCCTTGCAACAACCGTTTTCTG
AGCTTGCCGGTGGTGGTTACAGCCTACGCACTTCCGGTCCGGGTGTTTAC
GCGGAGGGTTTCAGACCGGCAAACTACGACGACGGCGGCAGCGACGGCGG
CGGCAGGTCGAACAAGCCGCCTTCCATACTTTACGTTGGAGCCATCGCGG
CGCAATCGATGGACGCCGATCGGATGGGAGTGGGGATACTACATCCCCCC
GAGGAGCTCGAGCTAAGGCTCCGCCAGGCGGCCGCACACGGGAAACGGGC
CGTCGTGTCGGCCTACCGGCGTCTCGCGAACAGCGCGACAGCGACCCATC
ATCGGCGACTTCCGACGTTTAGCAGCACCGCTGTGACAAGGCCGGGAAGT
ATGTCGTCGGGGTAA
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