mRNA_Ecto-sp13_S_contig17146.5069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17146.5069.1
Unique NamemRNA_Ecto-sp13_S_contig17146.5069.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17146.5069.1 vs. uniprot
Match: D8LLQ9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ9_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 9.480e-128
Identity = 195/201 (97.01%), Postives = 199/201 (99.00%), Query Frame = 1 
Query:    1 KSAGKHLLPMCDVYTAGTVFDALCPKRTDVPDNPGPGSSGEGLEELLDLMGEGAEARGVDGVRTGRVHAEALAGHGIGERLTFDVFRRYAEALSRAFRPSESHPSWEDLRIRLGLHPLEALIMGEEFVAEAPRSSSSQLDLMALAGWSGNLFLTDRHLLLHFPKRQQARVVPLGSVQDVRGSSSRAGPFTVDDAIELFGCE 603
            +SAGKHLLPMCDVYTAGTVFDALCPKRTDVPDNPGPGSSGEGLEELLDLMGEGA+ARGVDGVRTGRVHAEALAG GIGERLTFDVFRRYAEALSRAFRPS+SHPSWEDLRIRLGLHPLEALIMGEEFVAEAPRSS SQLDLMALAGWSGNLFLTDRHL+LHFPKRQQARVVPLGSVQDVRGSSSRAGPFTVDDAIELFGCE
Sbjct:  530 ESAGKHLLPMCDVYTAGTVFDALCPKRTDVPDNPGPGSSGEGLEELLDLMGEGAQARGVDGVRTGRVHAEALAGQGIGERLTFDVFRRYAEALSRAFRPSDSHPSWEDLRIRLGLHPLEALIMGEEFVAEAPRSSFSQLDLMALAGWSGNLFLTDRHLVLHFPKRQQARVVPLGSVQDVRGSSSRAGPFTVDDAIELFGCE 730
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BLAST of mRNA_Ecto-sp13_S_contig17146.5069.1 vs. uniprot
Match: A0A6H5L884_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L884_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 2.250e-87
Identity = 268/353 (75.92%), Postives = 274/353 (77.62%), Query Frame = 1 
Query:  148 MGEGAEARGVDGVRTGRVHAEALAGHGIGER-------------------LTFDVFRRYAEALSRAFRPSESHPSWEDLRIRLGLHPLEALIMGEEFVAEAPRSSSSQLDLMALAGWSGNLFLTDRHLLLHFPKRQQARVVPLGSVQDVRGSSSRAGPFTVDDAIELFGCEVHTVPLGLTRDSTTAAKEASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRPNGAYPNG-SGERPPTLPSAAAGGRXXXXXXXXXKGERGPSGHRTPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVEXXXXXA----AVEDGAEARRGDRKAYRLVLTKVRHQ 1134
            MGEG EARGVDGVRTGRVHAEALAGHGIGER                   LTFDVFRRY+EALSRAFRPS+SHPSWEDLRIRLGLHPLE+LIMGEEFVAE PRSSSSQLDLMALAGWSGNLFLTDRHLLLHFPKRQQARVVPLGSVQDVRGSSSRA                              AKEAS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           SGE PPTLPSAAA   XXXXXXXXXK ERGPSGHRTPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   XXXXX      VEDGAE R+G+RKAYRLVLTKV+ Q
Sbjct:    1 MGEGTEARGVDGVRTGRVHAEALAGHGIGERYPVRSLDTASDGVANTELRLTFDVFRRYSEALSRAFRPSDSHPSWEDLRIRLGLHPLESLIMGEEFVAEVPRSSSSQLDLMALAGWSGNLFLTDRHLLLHFPKRQQARVVPLGSVQDVRGSSSRA-----------------------------VAKEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGEWPPTLPSAAA-XXXXXXXXXXXKVERGPSGHRTPTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVEDGAEVRKGERKAYRLVLTKVKMQ 323
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17146.5069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLQ9_ECTSI9.480e-12897.01PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L884_9PHAE2.250e-8775.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17146contigEcto-sp13_S_contig17146:604..3569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score380.9
Seed ortholog evalue6.5e-103
Seed eggNOG ortholog2880.D8LLQ9
Model size1134
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Domain present in PSD-95, Dlg, and ZO-1/2.
EggNOG OGs29GBP@1,2RPHW@2759
Cds size1107
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17146.5069.1prot_Ecto-sp13_S_contig17146.5069.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17146 604..3542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462896.9937418-CDS-Ecto-sp13_S_contig17146:603..11341681462896.9937418-CDS-Ecto-sp13_S_contig17146:603..1134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17146 604..1134 -
1681462897.005507-CDS-Ecto-sp13_S_contig17146:1347..14491681462897.005507-CDS-Ecto-sp13_S_contig17146:1347..1449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17146 1348..1449 -
1681462897.0165489-CDS-Ecto-sp13_S_contig17146:2038..23001681462897.0165489-CDS-Ecto-sp13_S_contig17146:2038..2300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17146 2039..2300 -
1681462897.0249362-CDS-Ecto-sp13_S_contig17146:2793..29291681462897.0249362-CDS-Ecto-sp13_S_contig17146:2793..2929Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17146 2794..2929 -
1681462897.0336258-CDS-Ecto-sp13_S_contig17146:3466..35421681462897.0336258-CDS-Ecto-sp13_S_contig17146:3466..3542Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17146 3467..3542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462897.0427184-UTR-Ecto-sp13_S_contig17146:3542..35691681462897.0427184-UTR-Ecto-sp13_S_contig17146:3542..3569Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17146 3543..3569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17146.5069.1

>prot_Ecto-sp13_S_contig17146.5069.1 ID=prot_Ecto-sp13_S_contig17146.5069.1|Name=mRNA_Ecto-sp13_S_contig17146.5069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=369bp
MCDVYTAGTVFDALCPKRTDVPDNPGPGSSGEGLEELLDLMGEGAEARGV
DGVRTGRVHAEALAGHGIGERLTFDVFRRYAEALSRAFRPSESHPSWEDL
RIRLGLHPLEALIMGEEFVAEAPRSSSSQLDLMALAGWSGNLFLTDRHLL
LHFPKRQQARVVPLGSVQDVRGSSSRAGPFTVDDAIELFGCEVHTVPLGL
TRDSTTAAKEASAAAAAAAAAAAAAAAAAAAEAASASPAPGTPSSTATTS
STSTSRPNGAYPNGSGERPPTLPSAAAGGRNGGGGGGGGKGERGPSGHRT
PTGGGSGGFGVGVGFGGNGSGGFGGGGGAKGHGGEVEEAAAAAAVEDGAE
ARRGDRKAYRLVLTKVRHQ
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mRNA from alignment at Ecto-sp13_S_contig17146:604..3569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17146.5069.1 ID=mRNA_Ecto-sp13_S_contig17146.5069.1|Name=mRNA_Ecto-sp13_S_contig17146.5069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17146:604..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAGCGCCGGGAAGCACCTCCTGCCCATGTGCGACGTCTACACCGCGGG
GACCGTGTTCGACGCGCTGTGCCCCAAGCGAACGGACGTCCCAGATAACC
CTGGTGAGTCCGCGAGGAGTGTGTAAGGGTGTAGTGATGGTCTAGTTTAT
GTATGTGTGAGAGGCCAAGCGCAGTGGGAATCCAATGCTGGCATGAGTGT
GTGTTTTTTTATTTCTTAGCATCGACCGGCTGACCATTGGAAAATACGTC
AGCCTCAGTGTGGCTGAAAACAGAAAAAGGCCGTGATCTGGACACACGTG
CGGGGGCATCGTGCGTGCATCGTTTTATTCCGTTGTCCCATGCATGTATG
CTGGGTGACACCTTCGTGTGCAGGTAAGGAGACAGCATGTAGCAGATGAT
CAGAGAGGGATTGGATCGGAGGAGCGTTAGGAAGGTTTGGCTAAATCCCA
CCGATCTATGCCCAGTAAAAAAGTCTCCATCGCGGGAGGGGGGGGCTACT
TCATTCCGGACAACTGGCTGTAGCCGTTCAACCAACATTGTGTTGCATCC
CCCCACTCCGTCCTCTTGAGGATGCTTGGTCACTGGTCTACTAGCCAAGG
CATGCGCAATCCTCCTTGTCTGTGTGCGGGTATCGGGTAGGCCCTGGTTC
CTCTGGGGAAGGTCTAGAGGAGCTCTTGGACCTCATGGGGGAAGGCGCTG
AGGCGAGAGGGGTCGACGGCGTCAGGACCGGGAGGGTTCACGCTGAGGCG
CTGGCGGGGCACGGCATCGGCGAGCGGTACGTGGGTACATGTGATGGCAC
CGTGCTATGTGGTGATTTTTGATGGAGTTCGCACCCTGTGTGATCGTTCA
TGATGGGAGATGGAATGAGTGGTGTTTTTGGTGGAGTTCGCACCCTGAGG
GAGGTGGAACGAGGTGGGGGTTAGTGGGGTTGGCAAGTACCACGTGTGAT
CATTGGTGGAGGCAGGGGAGAGATGGGTGGGGTGTAGTGAAGTTGGCAGG
TACCCTGCGTGATCGCTGGACACGGCAATTGATGGTGTGGCCAACACGGA
GCTCAGGTTACAGGAGAAACCACCAATCATGAACGTCCTCTCCCCCCTCC
CATCCCTTACCTCTAGGGGCGGGAGCCCTTCTCAGAACTTCGGACAAGCT
GTTGGTATCGTGCCGCGGGACAAGAAAAACAAAAATCGTTGGTGCAAAAG
TGAAAAAACGGAGCACTCCCTCCCCCCCCCCCCCTCTTTCGTTCCGCCTC
GTTCCTGAAACCGACCAAGGCTAACGTTCGATGTTTTCCGGCGGTACGCG
GAAGCCCTCTCGCGGGCCTTCCGTCCCTCCGAATCCCACCCTTCCTGGGA
GGACCTGCGCATCCGGCTGGGTCTCCATCCTTTGGAGGCGTTGATCATGG
GGGAAGAGTTCGTCGCGGAGGCCCCCCGTTCTTCCTCTTCGCAGCTGGAC
CTGATGGCCCTCGCCGGGTGGTCCGGCAACCTCTTCCTCACGGACCGCCA
CCTGCTTCTGCACTTTCCCAAGCGGCAGCAGGTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTTGTTGTTGTTG
CTGTTGCTGTTGCTGTTGCTGTTGCTGTGGCAGGTGGTGCTGCCGCTGGA
TTTTTCTAGGAACAAAGTGACGTCGCCGTGGATGACGTCACATATCGACC
AGGTTTTTTTTACTATTGGCCAAACAGAAATCTGCGGGCACCTCTTTTCT
GTCTCTCGATCCGTTGTGTATGCTACTTCGACTGTTTGCCCCTTTTTGCG
TGGAGTGCTTGGCTTGACCGGTACCCTTTGTCTCGTTGCCCCATTCGCCG
TGGAAGATATCAGTACTCGCCGCAGTCGGCAATGACGTATCCGTTCACAC
GCATCTGTGCACCTTTCTTTGTCTTGCGCTTTTCGTGCCCCCCCCCTTTG
GCACGGTCCTCCTTGTACATTCGCGTACCGCAATCATCAGCGACGGTACC
ATGCATGCGGCAGCTTTTGCGCCCCACTGTTTTGTTGGGTTCCATTGCTT
TTTTCGTTGAGATGTTGACCATTTGGTTGCGGCTTGCCGTGCAACTTCAT
TCTTGTCATGACGTGGCCAGGCTCGAGTTGTTCCCCTCGGGAGCGTTCAG
GATGTCCGGGGGTCAAGCAGCCGCGCCGGACCGTTCACGGTGGACGACGC
CATCGAGCTCTTCGGCTGCGAGGCAAGAGCTTGGTACTTGCTGCTGCTGT
TGCTGCTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCCGCTGCTGCTG
CTGCTGCTGCTGTTGTAGTGGTGGATAGCAGCGTATTGTGCTGCTGCTGC
TGCGGCTGCTGCGGCTGCTACATCTGCGACTCGTGCGATCTTGACCGTAA
CACACCGTATGAATGAAAATCACTCCTCCTTTTAGGTCCACACGGTCCCC
CTCGGGCTTACCCGCGACTCAACAACAGCGGCCAAGGAGGCCTCAGCCGC
CGCCGCCGCCGCCGCAGCCGCCGCAGCCGCAGCAGCGGCAGCAGCGGCGG
CGGAGGCAGCTTCCGCATCGCCAGCACCAGGAACTCCATCCTCCACCGCG
ACGACCAGCAGCACCTCGACTTCCAGACCGAACGGCGCCTATCCCAACGG
CTCCGGTGAGCGGCCGCCAACGCTGCCGTCAGCGGCGGCCGGAGGACGCA
ACGGTGGCGGCGGCGGTGGTGGCGGAAAGGGGGAGCGGGGACCGAGCGGC
CACCGGACCCCAACTGGCGGCGGCAGCGGCGGGTTTGGGGTTGGGGTTGG
TTTCGGCGGTAACGGCAGCGGCGGGTTCGGCGGCGGCGGCGGTGCGAAGG
GGCACGGCGGAGAGGTGGAGGAGGCGGCGGCAGCGGCGGCGGTGGAAGAC
GGAGCGGAGGCTCGCAGGGGCGACCGGAAGGCGTACCGGCTGGTGCTGAC
AAAGGTACGGCATCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17146:604..3569-

>mRNA_Ecto-sp13_S_contig17146.5069.1 ID=mRNA_Ecto-sp13_S_contig17146.5069.1|Name=mRNA_Ecto-sp13_S_contig17146.5069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17146:604..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGACGTCTACACCGCGGGGACCGTGTTCGACGCGCTGTGCCCCAA
GCGAACGGACGTCCCAGATAACCCTGGCCCTGGTTCCTCTGGGGAAGGTC
TAGAGGAGCTCTTGGACCTCATGGGGGAAGGCGCTGAGGCGAGAGGGGTC
GACGGCGTCAGGACCGGGAGGGTTCACGCTGAGGCGCTGGCGGGGCACGG
CATCGGCGAGCGGCTAACGTTCGATGTTTTCCGGCGGTACGCGGAAGCCC
TCTCGCGGGCCTTCCGTCCCTCCGAATCCCACCCTTCCTGGGAGGACCTG
CGCATCCGGCTGGGTCTCCATCCTTTGGAGGCGTTGATCATGGGGGAAGA
GTTCGTCGCGGAGGCCCCCCGTTCTTCCTCTTCGCAGCTGGACCTGATGG
CCCTCGCCGGGTGGTCCGGCAACCTCTTCCTCACGGACCGCCACCTGCTT
CTGCACTTTCCCAAGCGGCAGCAGGCTCGAGTTGTTCCCCTCGGGAGCGT
TCAGGATGTCCGGGGGTCAAGCAGCCGCGCCGGACCGTTCACGGTGGACG
ACGCCATCGAGCTCTTCGGCTGCGAGGTCCACACGGTCCCCCTCGGGCTT
ACCCGCGACTCAACAACAGCGGCCAAGGAGGCCTCAGCCGCCGCCGCCGC
CGCCGCAGCCGCCGCAGCCGCAGCAGCGGCAGCAGCGGCGGCGGAGGCAG
CTTCCGCATCGCCAGCACCAGGAACTCCATCCTCCACCGCGACGACCAGC
AGCACCTCGACTTCCAGACCGAACGGCGCCTATCCCAACGGCTCCGGTGA
GCGGCCGCCAACGCTGCCGTCAGCGGCGGCCGGAGGACGCAACGGTGGCG
GCGGCGGTGGTGGCGGAAAGGGGGAGCGGGGACCGAGCGGCCACCGGACC
CCAACTGGCGGCGGCAGCGGCGGGTTTGGGGTTGGGGTTGGTTTCGGCGG
TAACGGCAGCGGCGGGTTCGGCGGCGGCGGCGGTGCGAAGGGGCACGGCG
GAGAGGTGGAGGAGGCGGCGGCAGCGGCGGCGGTGGAAGACGGAGCGGAG
GCTCGCAGGGGCGACCGGAAGGCGTACCGGCTGGTGCTGACAAAGGTACG
GCATCAG
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