mRNA_Ecto-sp13_S_contig17136.5063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: D7G8X2_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8X2_ECTSI) HSP 1 Score: 348 bits (893), Expect = 1.150e-109 Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1
Query: 1 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDPR 528
PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGG GERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDPR
Sbjct: 598 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGVGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDPR 773
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A6H5JH06_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH06_9PHAE) HSP 1 Score: 348 bits (892), Expect = 1.420e-108 Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1
Query: 1 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDPR 528
PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAE REGLVKVTDPR
Sbjct: 522 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAERREGLVKVTDPR 697
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A7S1YT54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YT54_9STRA) HSP 1 Score: 149 bits (377), Expect = 6.470e-43 Identity = 78/163 (47.85%), Postives = 109/163 (66.87%), Query Frame = 1
Query: 28 DLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKV 516
DL + E+ GG SLSN EA LA+++Y LK GG + RV VI+PY++Q +L+ F E++G + + VE++TVDAFQGRE +++I S VRAAGSRGIGFL+DVRRMNVALTRA+H LFV+ +++VNP W++L + A +V+V
Sbjct: 4 DLDSSEER---GGTSLSNSAEARLALHLYKGLKDETGGLSAKS---------RVAVITPYSQQAALLRRTFSEAMGSDYEKAVEVNTVDAFQGREANIVIFSCVRAAGSRGIGFLSDVRRMNVALTRAKHFLFVIARCRSITVNPYWRDLVEHARENRAVVRV 154
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A7S4R098_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R098_9STRA) HSP 1 Score: 161 bits (407), Expect = 1.370e-42 Identity = 82/172 (47.67%), Postives = 115/172 (66.86%), Query Frame = 1
Query: 1 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKV 516
P F+PF DL + E+ GG SLSN EA LA+++Y +LK GG + RV VI+PY++Q +L+ F E++G + + VE++TVDAFQGRE +++I S VRAAGSRGIGFL+DVRRMNVALTRA+H LFV+ +++VNP W++L + A +V+V
Sbjct: 971 PAFEPFTILDLDSAEER---GGTSLSNSAEARLALHLYKSLKDETGGLSAKS---------RVAVITPYSQQAALLRRTFSEAMGSDYEKAVEVNTVDAFQGREANIVIFSCVRAAGSRGIGFLSDVRRMNVALTRAKHFLFVIARCRSITVNPYWRDLVEHARENRAVVRV 1130
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: W7TG92_9STRA (Helicase sen1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG92_9STRA) HSP 1 Score: 160 bits (405), Expect = 1.650e-42 Identity = 92/181 (50.83%), Postives = 108/181 (59.67%), Query Frame = 1
Query: 1 PIFQPFMFFDLTT----GEQTRRGGGGSLS--NPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDP 525
P FQPF F DL + G R GGG LS N EA L VNVY TL+R G G+ G+VGVI+PY Q+ L +F +LG + E+VE++TVD QG+EKDVI+ S VRA G RGIGFLADVRRMNV LTR R + VVG AE L N WK L D A + VKV P
Sbjct: 460 PAFQPFAFLDLKSDGGRGRDKGREGGGGLSYRNSAEARLLVNVYQTLRREAKG---------QGVRGKVGVITPYQAQLMELHAQFARALGPSYQEEVELNTVDGCQGKEKDVILFSCVRAGGKRGIGFLADVRRMNVGLTRGRVAMLVVGRAETLQQNLHWKALLDHARTTGAFVKVPHP 631
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A1E7EPV8_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EPV8_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.540e-42 Identity = 85/176 (48.30%), Postives = 116/176 (65.91%), Query Frame = 1
Query: 1 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDPR 528
P FQPF DL + E+ GG SLSN EA LAV++Y +LK+ GG + RV VI+PY++Q +L+ F + LG+ + + VE++TVDAFQGRE +++I S VRAAGS GIGFL+DVRRMNVALTRA+H LFV+ +++ VNP WK+L + A +V V P+
Sbjct: 851 PAFQPFTILDLDSQEER---GGTSLSNSTEAHLAVHLYTSLKQITGGLS---------ASSRVAVITPYSQQAGLLRRCFGDLLGKDYTKYVEVNTVDAFQGREANIVIFSAVRAAGSHGIGFLSDVRRMNVALTRAKHFLFVIARCKSIVVNPYWKDLVEHARDTNAVVTVPKPK 1014
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A4D9CTX5_9STRA (WW domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTX5_9STRA) HSP 1 Score: 160 bits (405), Expect = 2.560e-42 Identity = 92/181 (50.83%), Postives = 108/181 (59.67%), Query Frame = 1
Query: 1 PIFQPFMFFDLTT----GEQTRRGGGGSLS--NPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKVTDP 525
P FQPF F DL + G R GGG LS N EA L VNVY TL+R G G+ G+VGVI+PY Q+ L +F +LG + E+VE++TVD QG+EKDVI+ S VRA G RGIGFLADVRRMNV LTR R + VVG AE L N WK L D A + VKV P
Sbjct: 969 PAFQPFTFLDLKSDGGRGRDKGREGGGGLSYRNSAEARLLVNVYQTLRREAKG---------QGVRGKVGVITPYQAQLMELHAQFARALGPSYQEEVELNTVDGCQGKEKDVILFSCVRAGGKRGIGFLADVRRMNVGLTRGRVAMLVVGRAETLQQNLHWKALLDHARTTGAFVKVPHP 1140
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A448Z5I0_9STRA (WW domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5I0_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.670e-41 Identity = 85/172 (49.42%), Postives = 114/172 (66.28%), Query Frame = 1
Query: 1 PIFQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKV 516
P F+PF DL + E+ GG SLSN EA LAV +Y +LK+ GA A RV VI+PY++Q +L+ KF + LG+ + + VE++TVDAFQGRE +++ S VRAAGSRGIGFL+DVRRMNVALTRA+H LFV+ +++ VNP WK+L + A +V V
Sbjct: 971 PAFRPFTVLDLDSKEER---GGTSLSNSTEADLAVYLYKSLKQITDGAS---------AASRVAVITPYSQQAGLLRRKFGDLLGKNYAQFVEVNTVDAFQGREAKIVVFSAVRAAGSRGIGFLSDVRRMNVALTRAKHFLFVIARCKSIVVNPYWKDLVEHARDTNAVVSV 1130
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A7R9ZTV5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7R9ZTV5_9STRA) HSP 1 Score: 151 bits (381), Expect = 2.270e-41 Identity = 83/169 (49.11%), Postives = 108/169 (63.91%), Query Frame = 1
Query: 10 QPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQVEISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKV 516
QPF DL + E+ GG SL+N EA LAV +Y +LK G RV VI+PY++Q VL+ KF LG + + VE++TVDAFQGRE ++I S VRAAGSRGIGFL+DVRRMNVALTRA++ LFV+ +++ VNP WK+L D A +V+V
Sbjct: 56 QPFTVLDLDSKEER---GGTSLANSTEADLAVYLYESLKEISNGLS---------ATSRVAVITPYSQQANVLRRKFSALLGENYTKFVEVNTVDAFQGREAKIVIFSAVRAAGSRGIGFLSDVRRMNVALTRAKNFLFVIARCQSIKVNPYWKDLVDHATETNAVVRV 212
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Match: A0A835ZA49_9STRA (AAA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA49_9STRA) HSP 1 Score: 156 bits (395), Expect = 5.560e-41 Identity = 89/171 (52.05%), Postives = 106/171 (61.99%), Query Frame = 1
Query: 7 FQPFMFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEHGIAGRVGVISPYAKQIKVLKEKFEESLGRGWHEQV-EISTVDAFQGREKDVIIVSTVRAAGSRGIGFLADVRRMNVALTRARHGLFVVGSAEALSVNPKWKELADLAESREGLVKV 516
FQPF+F +L G R+ SLSNP EA LAVNV TL R GA AG +GVI+PY +Q++ L+E+F + G W E STVD FQGREKDVI+VS VRA+G G+GFLADVRRMNVALTRARH L V+G L VNP W L A + L+ V
Sbjct: 729 FQPFVFLNLRAGATQRQFK--SLSNPAEARLAVNVISTLLRLTNGA----------AAGNIGVITPYGQQLRELRERFRGAFGADWERTTAEASTVDGFQGREKDVIVVSLVRASGGGGVGFLADVRRMNVALTRARHALCVIGHEATLRVNPMWAALLARARAAGALLDV 887 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17136.5063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17136.5063.1 >prot_Ecto-sp13_S_contig17136.5063.1 ID=prot_Ecto-sp13_S_contig17136.5063.1|Name=mRNA_Ecto-sp13_S_contig17136.5063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp MFFDLTTGEQTRRGGGGSLSNPMEAMLAVNVYVTLKRSFGGAGERGSGDEback to top mRNA from alignment at Ecto-sp13_S_contig17136:802..1922- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17136.5063.1 ID=mRNA_Ecto-sp13_S_contig17136.5063.1|Name=mRNA_Ecto-sp13_S_contig17136.5063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1121bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17136:802..1922- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17136:802..1922- >mRNA_Ecto-sp13_S_contig17136.5063.1 ID=mRNA_Ecto-sp13_S_contig17136.5063.1|Name=mRNA_Ecto-sp13_S_contig17136.5063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17136:802..1922- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |