mRNA_Ecto-sp13_S_contig17135.5062.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17135.5062.1
Unique NamemRNA_Ecto-sp13_S_contig17135.5062.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: D7FP05_ECTSI (GPA1, alpha subunit of a heterotrimeric G protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP05_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.660e-14
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMK+  G
Sbjct:   19 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKILFG 61
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: W7U751_9STRA (G-protein complex alpha subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U751_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.890e-11
Identity = 35/43 (81.40%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            +K+V+ ANAAAF+KEQEKIKLLLLGAGESGKSTIFKQMK+  G
Sbjct:   19 SKDVDQANAAAFKKEQEKIKLLLLGAGESGKSTIFKQMKLLYG 61
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: A0A7S2XUR0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUR0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.760e-11
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            +KEV+A N  AF+KEQEKIKLLLLGAGESGKSTIFKQMKV  G
Sbjct:   19 SKEVDALNEEAFKKEQEKIKLLLLGAGESGKSTIFKQMKVLYG 61
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: M9NY12_9STRA (G-protein alpha subunit (Fragment) n=15 Tax=Phytophthora TaxID=4783 RepID=M9NY12_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 8.180e-10
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            ++E+EA N  A + EQEK+KLLLLGAGESGKST+FKQMK+  G
Sbjct:   18 SREIEAKNEEAHRVEQEKVKLLLLGAGESGKSTVFKQMKILYG 60
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: A0A836CAY4_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.600e-9
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    7 KEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            KEVEA  A A++KE+EKIKLLLLGAGESGKST+FKQMK+  G
Sbjct:   20 KEVEAIAAEAYRKEREKIKLLLLGAGESGKSTVFKQMKILYG 61
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: A0A662XST8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XST8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.110e-8
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            ++E+EA N  A + EQEK+KLLLLGAGESGKST+FKQMK+  G
Sbjct:   19 SREIEAKNEEAHRVEQEKVKLLLLGAGESGKSTVFKQMKILYG 61
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: A0A835YQV5_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQV5_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.990e-8
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   13 VEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            ++A  AA F+KEQEK+KLLLLGAGESGKSTIFKQMK+  G
Sbjct:   22 IDAKAAADFRKEQEKVKLLLLGAGESGKSTIFKQMKILHG 61
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: A0A835ZE70_9STRA (GPA1, alpha subunit of a heterotrimeric G protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE70_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.990e-8
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   13 VEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            ++A  AA F+KEQEK+KLLLLGAGESGKSTIFKQMK+  G
Sbjct:   23 IDAKAAADFRKEQEKVKLLLLGAGESGKSTIFKQMKILHG 62
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: A0A485L3B6_9STRA (Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A485L3B6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.720e-8
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            ++EV+ AN  A + EQEK+KLLLLGAGESGKSTIFKQMK+  G
Sbjct:   17 SREVDQANEEAHRLEQEKVKLLLLGAGESGKSTIFKQMKILYG 59
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BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Match: T0QTL4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QTL4_SAPDV)

HSP 1 Score: 56.2 bits (134), Expect = 5.110e-8
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:    4 TKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG 132
            ++E++ AN  A ++EQEK+KLLLLGAGESGKSTIFKQMK+  G
Sbjct:   18 SRELDMANEEAHRQEQEKVKLLLLGAGESGKSTIFKQMKLLYG 60
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17135.5062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP05_ECTSI1.660e-1493.02GPA1, alpha subunit of a heterotrimeric G protein ... [more]
W7U751_9STRA1.890e-1181.40G-protein complex alpha subunit n=1 Tax=Nannochlor... [more]
A0A7S2XUR0_9STRA6.760e-1181.40Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M9NY12_9STRA8.180e-1067.44G-protein alpha subunit (Fragment) n=15 Tax=Phytop... [more]
A0A836CAY4_9STRA1.600e-976.19GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A662XST8_9STRA1.110e-867.44Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A835YQV5_9STRA1.990e-875.00GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A835ZE70_9STRA1.990e-875.00GPA1, alpha subunit of a heterotrimeric G protein ... [more]
A0A485L3B6_9STRA2.720e-869.77Aste57867_14988 protein n=6 Tax=Aphanomyces TaxID=... [more]
T0QTL4_SAPDV5.110e-867.44Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17135contigEcto-sp13_S_contig17135:3170..3301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score77.0
Seed ortholog evalue2.4e-12
Seed eggNOG ortholog2880.D7FP05
Preferred nameGPA1
Model size132
KEGG koko:K04534,ko:K04630
KEGG Pathwayko04015,ko04022,ko04024,ko04062,ko04071,ko04261,ko04360,ko04371,ko04540,ko04611,ko04670,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04730,ko04914,ko04915,ko04916,ko04921,ko04923,ko04924,ko04926,ko04934,ko04971,ko05012,ko05030,ko05032,ko05034,ko05133,ko05142,ko05145,ko05200,map04015,map04022,map04024,map04062,map04071,map04261,map04360,map04371,map04540,map04611,map04670,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04730,map04914,map04915,map04916,map04921,map04923,map04924,map04926,map04934,map04971,map05012,map05030,map05032,map05034,map05133,map05142,map05145,map05200
KEGG ModuleM00695
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.G-protein beta/gamma-subunit complex binding
EggNOG OGsKOG0082@1,KOG0082@2759
Cds size132
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04031,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462896.4308102-CDS-Ecto-sp13_S_contig17135:3169..33011681462896.4308102-CDS-Ecto-sp13_S_contig17135:3169..3301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17135 3170..3301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17135.5062.1prot_Ecto-sp13_S_contig17135.5062.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17135 3170..3301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17135.5062.1

>prot_Ecto-sp13_S_contig17135.5062.1 ID=prot_Ecto-sp13_S_contig17135.5062.1|Name=mRNA_Ecto-sp13_S_contig17135.5062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
QTKEVEAANAAAFQKEQEKIKLLLLGAGESGKSTIFKQMKVWIG
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mRNA from alignment at Ecto-sp13_S_contig17135:3170..3301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17135.5062.1 ID=mRNA_Ecto-sp13_S_contig17135.5062.1|Name=mRNA_Ecto-sp13_S_contig17135.5062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17135:3170..3301+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGAAGGAAGTGGAAGCCGCCAACGCAGCGGCCTTCCAGAAGGAGCA
GGAGAAGATAAAGCTGCTGCTGTTGGGAGCGGGAGAGTCGGGCAAATCCA
CCATCTTCAAGCAGATGAAGGTATGGATAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17135:3170..3301+

>mRNA_Ecto-sp13_S_contig17135.5062.1 ID=mRNA_Ecto-sp13_S_contig17135.5062.1|Name=mRNA_Ecto-sp13_S_contig17135.5062.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17135:3170..3301+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACGAAGGAAGTGGAAGCCGCCAACGCAGCGGCCTTCCAGAAGGAGCA
GGAGAAGATAAAGCTGCTGCTGTTGGGAGCGGGAGAGTCGGGCAAATCCA
CCATCTTCAAGCAGATGAAGGTATGGATAGGT
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