mRNA_Ecto-sp13_S_contig1712.5056.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1712.5056.1
Unique NamemRNA_Ecto-sp13_S_contig1712.5056.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1712.5056.1 vs. uniprot
Match: A0A6H5L9G8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9G8_9PHAE)

HSP 1 Score: 457 bits (1175), Expect = 1.090e-156
Identity = 271/309 (87.70%), Postives = 277/309 (89.64%), Query Frame = 3 
Query:  357 MCHAPTAKGSQLSLDQCDEILSPFFKSAPSGRVAVAXXXXXXXXXXXXATHPPGPQGDRHRDRQAMADPRGDCSAGGASGGAPAKSGEVDPCSRGDTAAAAA-------DSPAPEANAVPSETPHRPPRGSKRSRKKIRFTGAMGQFLDGRGVWNDFAVMEAERKAGLNMPQFLQQPDHHQQQHQQIQNMQHGKXXXXXXXXXXXX--VSGKEGRAGGTGEEDRNAKGQGRKGAPLNGGGTGSGSEEALPSDDVVADGISYWKSAGGITTAITEDLHTVATVPSDTANPGTSTGDAPRLPSKTAAGAGQ 1256
            MCHAPTA GSQLSLDQCDEILSPFFKSAPSGRVAVAXXXXXXXXXXX AT+PPGPQGDRHRDRQAMADPRGDCS GGASGGAP K GEVDPCSRGDTA AA        DSPAPEANA+PS T HRP RGSKRSRKKIRFTGAMGQFLDGRGVWNDFAVMEAERKAGLNMPQFLQQPDH QQ +QQIQNMQHGK    XXXXXXXX  VSG EGR GGT EEDRNAK QGRKGAPL+GGGTGSGSEEA PSDDVVADGIS W+SAGGITTAITEDLHTV TVPSDTANPGTSTGDAPRLPS+TAAGAGQ
Sbjct:    1 MCHAPTANGSQLSLDQCDEILSPFFKSAPSGRVAVAXXXXXXXXXXXAATYPPGPQGDRHRDRQAMADPRGDCSPGGASGGAPTKLGEVDPCSRGDTAVAAXXXXXXXXDSPAPEANAIPSGTSHRPRRGSKRSRKKIRFTGAMGQFLDGRGVWNDFAVMEAERKAGLNMPQFLQQPDHQQQHNQQIQNMQHGKGQHEXXXXXXXXXXVSGNEGREGGTSEEDRNAKDQGRKGAPLDGGGTGSGSEEATPSDDVVADGISCWRSAGGITTAITEDLHTVDTVPSDTANPGTSTGDAPRLPSQTAAGAGQ 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1712.5056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9G8_9PHAE1.090e-15687.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1712contigEcto-sp13_S_contig1712:13023..15253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1503
Hectar predicted targeting categoryother localisation
Exons2
Cds size933
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.7375724-UTR-Ecto-sp13_S_contig1712:13022..131011681462895.7375724-UTR-Ecto-sp13_S_contig1712:13022..13101Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1712 13023..13101 -
1681462895.7513633-UTR-Ecto-sp13_S_contig1712:13829..139641681462895.7513633-UTR-Ecto-sp13_S_contig1712:13829..13964Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1712 13830..13964 -
1681462895.7679725-UTR-Ecto-sp13_S_contig1712:14897..152531681462895.7679725-UTR-Ecto-sp13_S_contig1712:14897..15253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1712 14898..15253 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.7593596-CDS-Ecto-sp13_S_contig1712:13964..148971681462895.7593596-CDS-Ecto-sp13_S_contig1712:13964..14897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1712 13965..14897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1712.5056.1prot_Ecto-sp13_S_contig1712.5056.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1712 13965..14897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1712.5056.1

>prot_Ecto-sp13_S_contig1712.5056.1 ID=prot_Ecto-sp13_S_contig1712.5056.1|Name=mRNA_Ecto-sp13_S_contig1712.5056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MCHAPTAKGSQLSLDQCDEILSPFFKSAPSGRVAVAAAAAAATTDEEAAT
HPPGPQGDRHRDRQAMADPRGDCSAGGASGGAPAKSGEVDPCSRGDTAAA
AADSPAPEANAVPSETPHRPPRGSKRSRKKIRFTGAMGQFLDGRGVWNDF
AVMEAERKAGLNMPQFLQQPDHHQQQHQQIQNMQHGKGQHEEEEEEEEDV
SGKEGRAGGTGEEDRNAKGQGRKGAPLNGGGTGSGSEEALPSDDVVADGI
SYWKSAGGITTAITEDLHTVATVPSDTANPGTSTGDAPRLPSKTAAGAGQ
QQQQQQQRGP*
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mRNA from alignment at Ecto-sp13_S_contig1712:13023..15253-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1712.5056.1 ID=mRNA_Ecto-sp13_S_contig1712.5056.1|Name=mRNA_Ecto-sp13_S_contig1712.5056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1712:13023..15253- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAAACACATACCATGGAGTAAACCGCCGGAATTAGTCGCAAAGAGTAT
GTGCCCAGAGTCTTACATTGAAGAAGACAAGCCGCGCCTTCCCGAGACCG
CTGGACACACCGAAACGTGTACAGCGCTGTGGATGGGGGGATAAAGTCAT
CACGTCCCCTCCCTCTTGGACAAACGTTTGGGGTCCTTGACGGGAAACCT
TTTTTTCGAACTCAAACGAACGGGAACTTTTTTACACGGCCAGCGCAGTT
GACGCCAACCGGGTTGTTACACGCGCCAGGGACGACGGCCTCAAGGAACG
CAACGCCCTCCGCCCCCCCCGACCCCTCGTCACGGGAGAACCTGCCACTT
CCGTTGATGTGTCACGCCCCCACGGCTAAAGGCAGCCAGCTCTCGCTAGA
TCAATGCGACGAGATCCTGTCTCCGTTCTTCAAATCAGCACCGTCCGGCC
GGGTAGCAGTAGCGGCAGCAGCAGCCGCCGCAACCACCGACGAAGAAGCA
GCCACACATCCCCCCGGCCCACAAGGCGACCGACATCGTGACCGGCAAGC
CATGGCGGACCCTCGGGGTGACTGCAGCGCTGGCGGTGCCAGTGGGGGCG
CACCGGCAAAGTCAGGTGAAGTGGATCCTTGTTCCCGGGGCGATACCGCA
GCAGCAGCAGCTGATAGCCCAGCCCCCGAGGCCAACGCGGTCCCTAGCGA
GACTCCTCATCGCCCCCCAAGAGGTAGCAAACGCTCCCGAAAGAAGATTC
GCTTCACTGGGGCAATGGGTCAGTTTTTGGACGGACGGGGGGTTTGGAAC
GACTTCGCTGTGATGGAGGCCGAGCGAAAGGCGGGCCTAAATATGCCGCA
GTTTCTGCAGCAGCCAGACCACCACCAGCAGCAGCATCAGCAAATCCAAA
ATATGCAGCACGGAAAGGGGCAGCACGAGGAGGAGGAGGAGGAGGAGGAG
GATGTTTCAGGGAAGGAGGGAAGGGCGGGAGGCACGGGTGAGGAGGATCG
AAATGCAAAGGGTCAGGGGCGAAAGGGAGCACCGTTGAACGGAGGGGGCA
CGGGGAGCGGCAGCGAGGAAGCATTACCTTCTGATGACGTTGTTGCCGAT
GGTATCAGTTATTGGAAGTCGGCGGGCGGCATCACGACCGCCATCACGGA
GGATCTGCACACCGTCGCCACAGTACCGTCTGATACAGCCAACCCCGGCA
CGAGCACTGGAGACGCACCCCGTCTGCCCAGTAAAACAGCAGCAGGAGCG
GGGCAGCAGCAGCAGCAGCAGCAGCAGAGGGGTCCGTGACGCGGGTGTAG
AAGAGACGGTGGAGATGGAATGACTGCTGTGGGCGCGGGGGGCTGCCAGT
TGGAGGTTGGAGCTGGCGCCACCAATAAACTTCTGAAAATAGCGAGGATG
GGAACAGGGCTGCAAAGAACACTGGTAGGCTGGCCTGTTTGAAATTTAGT
TGCCCTTACGGCGCCGGGCGTGGGATGTATGTACAATGGGGCGGGAGGGG
GGGTCATGTTGATAGGGGTGACTGGGTTTCATTGTGTCTTTTGTCAAGTA
TCAGTGTCCATGCCAGCAGGCATTTTGTAAATGCTAAACCAACCAGCGGG
TACGAAAAGTTCCCGATTGTTAGAGAAGAGGCGAGAGAGAGACTCGAGAG
GAGAGTGAGCCGGCAGGAAGAAAACGGTTGAGAATGAGTGTGGAGACTGG
GGGCTAGCTGGCTGTAAACAGATAAATTTTATGGTACTTTGTTCAATATT
GTTCTCGTTCAGTGAAGTGGGTGTTTTGACGATCACAAGAGAGAGACAGA
GAGAGTGGAGGTAACCGAGTCGCAGTGGTTACCGTAGTCTGTCAAATTCA
CTTCAAATTCAATTGCGTTGTGTTCGAGAGAGTGAAATTTTTGGGGCGGG
GCTTGTTGTAGGGTACCCGAAGAAAGAGTTGTTCGTGTTGACGTCTGATT
GTGCGCGCGTGAAAGACACGGGAAGCTAGTATACCACCAGAAATCTGAGT
GAATTGTGGAGGCCAGCTCTTTTGATGAGTTGTCGCTGGTTGGCTGCCGT
AGGTGGCTGTCCTATCGCTGAACGGCTTCTCTTCTCTTCTGCTACGCTCC
CTCGTGTGTGTGTTTATTTGTATGTTTTCCGTGGGATGCCCGAGTATTGC
AGCTGCCTGTTTCTCTCTGTCTCACGACATTTCGGTGGTTGGTTGTATTC
GGGGGAAAGCGTGTCACTAGTTGTTTCAGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1712:13023..15253-

>mRNA_Ecto-sp13_S_contig1712.5056.1 ID=mRNA_Ecto-sp13_S_contig1712.5056.1|Name=mRNA_Ecto-sp13_S_contig1712.5056.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1712:13023..15253- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTCACGCCCCCACGGCTAAAGGCAGCCAGCTCTCGCTAGATCAATG
CGACGAGATCCTGTCTCCGTTCTTCAAATCAGCACCGTCCGGCCGGGTAG
CAGTAGCGGCAGCAGCAGCCGCCGCAACCACCGACGAAGAAGCAGCCACA
CATCCCCCCGGCCCACAAGGCGACCGACATCGTGACCGGCAAGCCATGGC
GGACCCTCGGGGTGACTGCAGCGCTGGCGGTGCCAGTGGGGGCGCACCGG
CAAAGTCAGGTGAAGTGGATCCTTGTTCCCGGGGCGATACCGCAGCAGCA
GCAGCTGATAGCCCAGCCCCCGAGGCCAACGCGGTCCCTAGCGAGACTCC
TCATCGCCCCCCAAGAGGTAGCAAACGCTCCCGAAAGAAGATTCGCTTCA
CTGGGGCAATGGGTCAGTTTTTGGACGGACGGGGGGTTTGGAACGACTTC
GCTGTGATGGAGGCCGAGCGAAAGGCGGGCCTAAATATGCCGCAGTTTCT
GCAGCAGCCAGACCACCACCAGCAGCAGCATCAGCAAATCCAAAATATGC
AGCACGGAAAGGGGCAGCACGAGGAGGAGGAGGAGGAGGAGGAGGATGTT
TCAGGGAAGGAGGGAAGGGCGGGAGGCACGGGTGAGGAGGATCGAAATGC
AAAGGGTCAGGGGCGAAAGGGAGCACCGTTGAACGGAGGGGGCACGGGGA
GCGGCAGCGAGGAAGCATTACCTTCTGATGACGTTGTTGCCGATGGTATC
AGTTATTGGAAGTCGGCGGGCGGCATCACGACCGCCATCACGGAGGATCT
GCACACCGTCGCCACAGTACCGTCTGATACAGCCAACCCCGGCACGAGCA
CTGGAGACGCACCCCGTCTGCCCAGTAAAACAGCAGCAGGAGCGGGGCAG
CAGCAGCAGCAGCAGCAGCAGAGGGGTCCGTGA
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