mRNA_Ecto-sp13_S_contig17114.5054.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17114.5054.1
Unique NamemRNA_Ecto-sp13_S_contig17114.5054.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17114.5054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17114contigEcto-sp13_S_contig17114:1994..3569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1046
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002425.1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.6748545-UTR-Ecto-sp13_S_contig17114:1993..21191681462895.6748545-UTR-Ecto-sp13_S_contig17114:1993..2119Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17114 1994..2119 -
1681462895.7114491-UTR-Ecto-sp13_S_contig17114:3369..35691681462895.7114491-UTR-Ecto-sp13_S_contig17114:3369..3569Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17114 3370..3569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.6879833-CDS-Ecto-sp13_S_contig17114:2119..27491681462895.6879833-CDS-Ecto-sp13_S_contig17114:2119..2749Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17114 2120..2749 -
1681462895.6997378-CDS-Ecto-sp13_S_contig17114:3279..33691681462895.6997378-CDS-Ecto-sp13_S_contig17114:3279..3369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17114 3280..3369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17114.5054.1prot_Ecto-sp13_S_contig17114.5054.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17114 2120..3369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17114.5054.1

>prot_Ecto-sp13_S_contig17114.5054.1 ID=prot_Ecto-sp13_S_contig17114.5054.1|Name=mRNA_Ecto-sp13_S_contig17114.5054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MLGARDDRVSASRRKLTQALEQDRLLSSPQGSSSSRSESKKTGGSGRNTQ
HGSRRSSSLEEDESEEELRDRRRLIASPPTETRPLAVRPFAGRSPSGSGM
RGEEGRQPNTKGFLTSREKREGMKRASVDGLGDGEYMSPHACSRRNVRNT
LGEADDSRGPTRRRGTTLAIGQDDEKSLPADPHATAVLLGGAFRNQDNSG
DWQGSRKESVRIIAEDFIGNVFDDLASSPSHRDGQRYMW*
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mRNA from alignment at Ecto-sp13_S_contig17114:1994..3569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17114.5054.1 ID=mRNA_Ecto-sp13_S_contig17114.5054.1|Name=mRNA_Ecto-sp13_S_contig17114.5054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17114:1994..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTGACTAGTACCTTGACTAGCCTAACACCACAGACCACGCATATGCTT
AGAGTGCACAGCATCTTCGGTGAATTTGTGCGTATGTTGCAGGTGTTGCG
GTTGTGATGGTTGCAGTCATAGGTGAACTACTGTACGTACCGCTGTTTGG
AGAGAGAAGGGCCCGAGCTTTTGAATGGTTTCGTATGTGGGGTATACTCC
ATGCTCGGCGCACGCGATGATCGTGTTTCAGCGTCACGCCGAAAGCTAAC
CCAGGCCTTGGAACAAGACCGCCTCTTGTCATCACCACAGGTGAAGTGTA
GGAGCGGTGCAAGCGTTCAGTATTATTATGAAGAAAGAGTACGAGTTGTC
TCGAGTAGCGACCTCTGCGCCCAATACCGATTTCCAGAGCTCGATAACTC
TGCATCACACATATGCATAGAGGCGGTGCCGAACATGGTAACGGCGGAGC
CGTCCCGTCGAGAGAATCCCGAAAACATATCGTCTAACTCTGGTATCGTC
CTCGTCTTGGAGTAGGTGGGCTTTGAAAATTGGTCCGGGAGGTGTGGTGT
CTGTGCGACCAGCGGTGGTGTCGACCACACTTGCAGGTGACCCCCGACCC
AACTGCTTTGCACGAAGAACGGTCGGAAAAATTTTGTACGAAAACATACA
ACACAAAGTTCCAAGACAGCACTCCAAAGGATGGTAACGTGTCGGGTATT
TGCGGTGATGGTTCTGCGACGTGTGGCGGAAAGCGAATGTGCTGTAATGG
ACAACAACACAGACATACCTCGGAAATATTTTTTAACAATACTGCGCACT
CACATGTTCGGTGTCAACAGGGGTCGTCGTCGTCTCGAAGCGAAAGCAAG
AAAACAGGAGGCAGTGGCAGAAATACGCAGCACGGTTCCAGGAGATCTTC
GAGTCTTGAGGAGGACGAGAGCGAGGAGGAACTGCGAGACAGGCGCCGTC
TAATAGCTTCGCCGCCTACAGAAACACGGCCGCTCGCAGTGCGACCGTTC
GCGGGGAGATCCCCGTCAGGCAGTGGCATGCGCGGAGAGGAGGGGCGGCA
GCCGAATACGAAGGGCTTCCTCACGTCACGAGAGAAACGAGAAGGCATGA
AACGCGCTAGCGTTGACGGCCTAGGCGACGGCGAGTATATGTCGCCACAT
GCATGTAGTAGAAGAAACGTCCGGAACACGCTCGGAGAAGCGGACGACAG
CCGAGGGCCAACTCGTCGGAGAGGTACAACATTAGCAATCGGCCAGGATG
ACGAAAAAAGTCTGCCAGCAGACCCGCATGCTACAGCAGTCTTGCTCGGA
GGTGCATTCCGAAATCAGGACAACAGCGGGGATTGGCAGGGCTCCAGGAA
GGAGTCGGTGCGAATAATAGCTGAGGATTTCATTGGCAACGTCTTCGACG
ATCTAGCGTCATCGCCGTCTCATCGTGATGGCCAGCGTTACATGTGGTAG
GTTTGTGAACAGGTTGCCCCCCCCTCCCCGCATGCTTTCAGCACATAGCA
GGAGTGGAATATTTACAGCTTTTTAGAAGGTGTTTCAACTTCCCTTGTAT
AGTACACCCTAGGTTAGACGTTGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17114:1994..3569-

>mRNA_Ecto-sp13_S_contig17114.5054.1 ID=mRNA_Ecto-sp13_S_contig17114.5054.1|Name=mRNA_Ecto-sp13_S_contig17114.5054.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17114:1994..3569- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCGGCGCACGCGATGATCGTGTTTCAGCGTCACGCCGAAAGCTAAC
CCAGGCCTTGGAACAAGACCGCCTCTTGTCATCACCACAGGGGTCGTCGT
CGTCTCGAAGCGAAAGCAAGAAAACAGGAGGCAGTGGCAGAAATACGCAG
CACGGTTCCAGGAGATCTTCGAGTCTTGAGGAGGACGAGAGCGAGGAGGA
ACTGCGAGACAGGCGCCGTCTAATAGCTTCGCCGCCTACAGAAACACGGC
CGCTCGCAGTGCGACCGTTCGCGGGGAGATCCCCGTCAGGCAGTGGCATG
CGCGGAGAGGAGGGGCGGCAGCCGAATACGAAGGGCTTCCTCACGTCACG
AGAGAAACGAGAAGGCATGAAACGCGCTAGCGTTGACGGCCTAGGCGACG
GCGAGTATATGTCGCCACATGCATGTAGTAGAAGAAACGTCCGGAACACG
CTCGGAGAAGCGGACGACAGCCGAGGGCCAACTCGTCGGAGAGGTACAAC
ATTAGCAATCGGCCAGGATGACGAAAAAAGTCTGCCAGCAGACCCGCATG
CTACAGCAGTCTTGCTCGGAGGTGCATTCCGAAATCAGGACAACAGCGGG
GATTGGCAGGGCTCCAGGAAGGAGTCGGTGCGAATAATAGCTGAGGATTT
CATTGGCAACGTCTTCGACGATCTAGCGTCATCGCCGTCTCATCGTGATG
GCCAGCGTTACATGTGGTAG
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