mRNA_Ecto-sp13_S_contig17105.5049.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17105.5049.1
Unique NamemRNA_Ecto-sp13_S_contig17105.5049.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17105.5049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17105contigEcto-sp13_S_contig17105:3044..3714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size671
Hectar predicted targeting categoryother localisation
Exons1
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.291139-UTR-Ecto-sp13_S_contig17105:3043..32611681462895.291139-UTR-Ecto-sp13_S_contig17105:3043..3261Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17105 3044..3261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.3011668-CDS-Ecto-sp13_S_contig17105:3261..37141681462895.3011668-CDS-Ecto-sp13_S_contig17105:3261..3714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17105 3262..3714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17105.5049.1prot_Ecto-sp13_S_contig17105.5049.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17105 3262..3714 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17105.5049.1

>prot_Ecto-sp13_S_contig17105.5049.1 ID=prot_Ecto-sp13_S_contig17105.5049.1|Name=mRNA_Ecto-sp13_S_contig17105.5049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MSHASCRTSGTTITHKNKQTRHANPAVEERQCIPRPRRREKVQVASQIPL
EADRVFPVNECEETIHSSCSAQPFTRYAASSSSTLTHPSPAPPNLQLFSL
HSLSTASTHISRKNRTGTESWLKIHVVCHLPSTTAIPPPTFAENRCNFRR
L
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mRNA from alignment at Ecto-sp13_S_contig17105:3044..3714+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17105.5049.1 ID=mRNA_Ecto-sp13_S_contig17105.5049.1|Name=mRNA_Ecto-sp13_S_contig17105.5049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=671bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17105:3044..3714+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACTCGTTCGTGGCTTCGCGAGCTCAAAAAGTTAACCAAACTGATTCTC
TCCACGCGCACCTGTGCCTCCACCCCATGTACATATCACTCAAGGAATAC
CAACGCTGTGTGCGCGATTGCCTTCAGTACCGGCGCATCTCCCAAGACAA
GCACACATTCATACAGCAGCGATACCCAAAGCTCTGAGGACAAACAAGCC
AGTGGCTAACAGACTTCAATGAGCCATGCCTCGTGCAGGACGTCGGGCAC
CACCATCACACACAAGAACAAACAAACGCGGCATGCGAACCCAGCGGTCG
AAGAACGGCAATGTATTCCAAGACCAAGGCGGCGGGAAAAAGTGCAGGTC
GCCTCCCAAATACCACTCGAGGCCGATCGGGTTTTCCCGGTCAACGAGTG
CGAGGAGACAATACACTCGTCGTGCTCAGCACAGCCATTCACCCGATACG
CAGCATCTTCTTCATCGACGCTCACACACCCGTCACCCGCACCACCGAAT
CTTCAACTCTTCAGTCTCCACTCTCTGTCTACGGCATCGACACATATCTC
ACGAAAAAATCGTACTGGGACGGAGTCGTGGCTAAAAATACATGTTGTCT
GCCATCTCCCTTCCACAACCGCAATACCGCCTCCTACCTTTGCCGAAAAC
CGTTGTAACTTTCGTCGTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17105:3044..3714+

>mRNA_Ecto-sp13_S_contig17105.5049.1 ID=mRNA_Ecto-sp13_S_contig17105.5049.1|Name=mRNA_Ecto-sp13_S_contig17105.5049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17105:3044..3714+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCATGCCTCGTGCAGGACGTCGGGCACCACCATCACACACAAGAA
CAAACAAACGCGGCATGCGAACCCAGCGGTCGAAGAACGGCAATGTATTC
CAAGACCAAGGCGGCGGGAAAAAGTGCAGGTCGCCTCCCAAATACCACTC
GAGGCCGATCGGGTTTTCCCGGTCAACGAGTGCGAGGAGACAATACACTC
GTCGTGCTCAGCACAGCCATTCACCCGATACGCAGCATCTTCTTCATCGA
CGCTCACACACCCGTCACCCGCACCACCGAATCTTCAACTCTTCAGTCTC
CACTCTCTGTCTACGGCATCGACACATATCTCACGAAAAAATCGTACTGG
GACGGAGTCGTGGCTAAAAATACATGTTGTCTGCCATCTCCCTTCCACAA
CCGCAATACCGCCTCCTACCTTTGCCGAAAACCGTTGTAACTTTCGTCGT
CTG
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