mRNA_Ecto-sp13_S_contig17103.5048.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17103.5048.1
Unique NamemRNA_Ecto-sp13_S_contig17103.5048.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: D7G5P1_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P1_ECTSI)

HSP 1 Score: 456 bits (1174), Expect = 9.860e-160
Identity = 221/224 (98.66%), Postives = 222/224 (99.11%), Query Frame = 1
Query:    1 TVYVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVLLEGEDDQADATQEL 672
            TVYVRQAMCVGAGQCEK CKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGH VKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVLLEGEDD+ADATQEL
Sbjct:  182 TVYVRQAMCVGAGQCEKKCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHTVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVLLEGEDDKADATQEL 405          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A835ZCK1_9STRA (Heat shock protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCK1_9STRA)

HSP 1 Score: 253 bits (647), Expect = 2.500e-80
Identity = 117/209 (55.98%), Postives = 149/209 (71.29%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGK-TFGSLYIRFSIAFPKALSAEQVTTLRGVL 630
            +VRQ MC+ A +CEK C +C GPG+A+R  ++ PGFVQQ+Q+RDD C+ARGKCW K C+ACP GPT+ E V LT EVQKGM+D + IVFEE ADE  GH+ G LV  I+TL H +F R  DDL M+M+I L++AL GFE  F HLDG  V VK+ G+T+PG    L  EGMPRR   G+ + G L IRF++ FPK LS +Q  ++R VL
Sbjct:  151 FVRQVMCLRAAECEKRCPECMGPGVAMRTQKIAPGFVQQIQMRDDRCVARGKCWNKRCTACPNGPTEPESVPLTVEVQKGMQDGEHIVFEESADEAAGHKPGDLVLTIDTLPHAEFARHGDDLFMEMDIDLLDALVGFETGFAHLDGRRVPVKQTGVTAPGTTRVLSGEGMPRRNPRGQGSHGDLTIRFNVVFPKHLSPDQQRSIREVL 359          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A835Z111_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z111_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.100e-78
Identity = 116/218 (53.21%), Postives = 155/218 (71.10%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQG---ITSPGDVMQLKKEGMP----RRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVLLEG 639
            +VRQ MC+ AG+CE  C +C GPG+AVR  +LGPGFVQQ+Q+RDD C+ARG+CW + C+ACP+G T+ E   LT ++ KG RD + IVFEE+ADE  GH+ G LV  + TL HPDFTRR DDL +D+++PLV+AL GFE    HLDGH V+V +     +T+PGDV+ L  EGMP       + G+  G+L+I+F++ FP+ALSA Q   +R VL EG
Sbjct:  157 FVRQVMCLRAGECETKCPECHGPGLAVRTQRLGPGFVQQMQVRDDRCVARGRCWNRRCAACPRGATEPEGADLTVDLHKGARDGEKIVFEEMADEAAGHKPGDLVLTVSTLPHPDFTRRGDDLFLDLDVPLVDALVGFETTVVHLDGHAVRVSRGAGGAVTAPGDVLVLAGEGMPLTARAAAAAGRERGALHIKFNVVFPRALSAAQQAQIRAVLGEG 374          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A482T1Z3_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1Z3_9ARCH)

HSP 1 Score: 230 bits (586), Expect = 3.870e-72
Identity = 109/200 (54.50%), Postives = 138/200 (69.00%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQ 606
            Y+RQ +CV A  CEK  +DCQGPGI VRM QL PGFVQQVQ+ D +C+ARGK WK  C ACPKG T++EE+ LT ++  GM+D D I F++VADE +GH  G LVFII+     DF R  DDLHM+M I L E+L GF+ +FKHLDGH V V K  +T   +V+++  EGMP++G   K FG LYI   I FP+  S +Q
Sbjct:   79 YLRQVLCVEASSCEKKSQDCQGPGIKVRMQQLAPGFVQQVQVSDPSCVARGKAWKSPCKACPKGMTEEEEIQLTLDILPGMKDGDQIKFDQVADEAVGHIPGDLVFIIQQAPDTDFRREGDDLHMNMVITLHESLVGFKKSFKHLDGHQVVVDKSDVTYCSEVVKMVGEGMPKKGGK-KVFGDLYITLLIDFPRRFSEQQ 277          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A7S2UXH4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXH4_9STRA)

HSP 1 Score: 228 bits (582), Expect = 2.210e-70
Identity = 102/208 (49.04%), Postives = 137/208 (65.87%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVL 630
            Y+R+ +C   G+CEKNC DC GPG+ V+  QL PGFVQQVQ  D NC+ARGKCW++ C ACP G T+ E++ LT ++  G+ + D I FE VA E IGH  G LV ++  + H  F RR DDLH  + IPL +AL GF     HLDGH V ++K+ +T  G V++++ EGMP++G  G  FG +Y+  SI FP  LS EQ  +LR +L
Sbjct:  173 YIREVLCTNHGECEKNCPDCHGPGVRVKTQQLAPGFVQQVQASDPNCVARGKCWRRGCKACPNGQTETEQISLTVDLAPGLAEGDNIRFEGVASEQIGHIPGDLVLLVAPIRHEYFERRGDDLHTTINIPLKDALVGFSTEINHLDGHKVLLRKEDVTYFGQVVKIRGEGMPKKGGTGG-FGDMYVECSITFPAQLSEEQKASLREIL 379          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A4D9DAZ8_9STRA (J domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAZ8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.980e-66
Identity = 97/208 (46.63%), Postives = 139/208 (66.83%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVL 630
            Y+RQ +C+   +C K   +CQGPG+ +R   L PGF+QQVQ+RD+ C+ARGK W+K CSACP G TQ EEV LT ++Q GM+D + I F +VADE +GH AG LV  ++ + H  +TR  DDL + +++ L++AL GFE   K +DG  VK+ K  +TS G+V ++K +GMP+ G +G   G L I + + FP+AL+ EQ   L+  L
Sbjct:  152 YIRQVLCMNHKECTKPAPECQGPGVRLRQQHLAPGFIQQVQVRDETCVARGKAWRKGCSACPNGQTQPEEVKLTVDIQPGMKDGEMITFSDVADEKVGHSAGDLVVHVQAIPHEFYTRHGDDLRVSLKVGLLDALVGFETTVKQVDGRDVKLNKPTVTSHGEVQRVKGQGMPKSGGSG--LGDLLITWEVTFPEALTDEQKALLKKAL 357          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: K0T887_THAOC (J domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T887_THAOC)

HSP 1 Score: 208 bits (529), Expect = 1.860e-62
Identity = 105/217 (48.39%), Postives = 134/217 (61.75%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVLLEGEDDQAD 657
            YVRQ +C    +C KN ++CQGPG+ VRM Q+ PGFVQQVQ RD+ C+A GK W+ NC  CP G TQ+E++ LT ++ KGM   + + FE VADE  G  AG L F I    H  F R  D L++ MEIPLV+AL+GF   F HLDGH   V    +T    VM++  +GMPRR  NG+ FG LYI F + FP  LS EQ   +R +   G+ D  D
Sbjct:  162 YVRQTLCTNWQECMKNNQECQGPGVKVRMQQIAPGFVQQVQQRDERCVAHGKMWRSNCRDCPNGKTQKEKIDLTIDLNKGMYPGEAVTFEGVADEKPGMTAGDLNFFIVEEKHDHFHRDGDHLYVTMEIPLVDALTGFSHEFTHLDGHKFTVPVNDVTECDHVMRVAGKGMPRR--NGRGFGDLYITFDVDFPDTLSEEQKRGIRKIF--GKKDPTD 374          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A7S0GKJ3_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKJ3_9STRA)

HSP 1 Score: 207 bits (527), Expect = 2.470e-62
Identity = 106/210 (50.48%), Postives = 138/210 (65.71%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFII-ETLVHPD-FTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVL 630
            YVRQ +C+    C K  K+CQGPG+ V+M Q+ PGFVQQVQ RD+NC+ARGK WK NC  CPKG TQ E++ L+ EV  GMR  + + FE VADE  G  AG L F+I +  V+P  FTR  D L+  MEIPLV+AL GF+   +HLDGH   ++   +T    VM++  +GMPRR  +G+ FG LY+ F I FP+ LSAEQ   +  +L
Sbjct:  146 YVRQTLCMNWEMCMKTSKECQGPGVKVKMQQIAPGFVQQVQQRDNNCVARGKMWKPNCRDCPKGKTQPEKISLSVEVTPGMRAGERVSFESVADEKPGMEAGDLHFVILQVDVNPVLFTRDGDRLYKTMEIPLVDALVGFKRTLEHLDGHKFTIQVDKVTECDHVMRVPGKGMPRR--SGRGFGDLYLTFEIDFPEELSAEQKAGINKIL 353          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: B8BTB9_THAPS (J domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTB9_THAPS)

HSP 1 Score: 206 bits (525), Expect = 7.000e-62
Identity = 101/208 (48.56%), Postives = 130/208 (62.50%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLRGVL 630
            YVR  +CV   +C K  ++CQGPG+ VRM Q+ PGFVQQVQ RDD C+ARGK W+ NC  CP G TQ E + L  ++QKGM   + + FE V+DE  G   G L F+I  + H  F R  D L++ MEIPLV+AL+GF   F HLDGH   V   G+T    VM++  +GMPRRG  G  FG LYI F + FP  L+ +Q   +R +L
Sbjct:  160 YVRNTLCVNWQECMKANQECQGPGVKVRMQQIAPGFVQQVQQRDDRCVARGKMWRNNCRECPNGQTQPETIELEIDLQKGMYPGEAVTFEGVSDEKPGMNPGDLNFVIVQVGHEFFHRDGDHLYVTMEIPLVDALTGFSHEFTHLDGHKFTVNVDGVTECDHVMRVSGKGMPRRGGRGG-FGDLYITFDVDFPDTLTEKQRKEIRKIL 366          
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Match: A0A0G4GG88_VITBC (J domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GG88_VITBC)

HSP 1 Score: 204 bits (518), Expect = 6.860e-61
Identity = 96/205 (46.83%), Postives = 129/205 (62.93%), Query Frame = 1
Query:    7 YVRQAMCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWKKNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLVFIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQGITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLR 621
            Y RQ +CV   +C  + +DCQG G+ V   Q+GPGF+ Q Q++DD+C+  GK WKK C ACPKG T++E V+LTA V+ GM   DTI FE VAD  +G+  G L F++    H  F RR +DL   +EIPL++AL GFE  F+HLDG    +KK  +T  G+ M +K +GMP RG    +FG L I F I FP  L+ +Q   +R
Sbjct:  161 YRRQVLCVNVDECTVDRRDCQGAGLRVVTQQMGPGFIVQNQMQDDSCVGPGKAWKKKCKACPKGQTEEEPVLLTAYVEAGMTSGDTITFEGVADHKVGYEPGDLNFVVTETQHDRFVRRGNDLLTTVEIPLLDALVGFETQFRHLDGKDFPLKKDDVTDHGETMTVKGKGMPVRGGKEGSFGDLLITFHIKFPDKLTKKQKELVR 365          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17103.5048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5P1_ECTSI9.860e-16098.66Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A835ZCK1_9STRA2.500e-8055.98Heat shock protein 40 n=1 Tax=Tribonema minus TaxI... [more]
A0A835Z111_9STRA1.100e-7853.21J domain-containing protein n=1 Tax=Tribonema minu... [more]
A0A482T1Z3_9ARCH3.870e-7254.50J domain-containing protein n=1 Tax=archaeon TaxID... [more]
A0A7S2UXH4_9STRA2.210e-7049.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A4D9DAZ8_9STRA3.980e-6646.63J domain-containing protein n=2 Tax=Monodopsidacea... [more]
K0T887_THAOC1.860e-6248.39J domain-containing protein n=1 Tax=Thalassiosira ... [more]
A0A7S0GKJ3_9STRA2.470e-6250.48Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B8BTB9_THAPS7.000e-6248.56J domain-containing protein n=1 Tax=Thalassiosira ... [more]
A0A0G4GG88_VITBC6.860e-6146.83J domain-containing protein n=2 Tax=Vitrella brass... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17103contigEcto-sp13_S_contig17103:1..2654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score201.1
Seed ortholog evalue5.5e-49
Seed eggNOG ortholog159749.K0T887
Model size675
Hectar predicted targeting categoryother localisation
GOsGO:0000988,GO:0000989,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006457,GO:0006458,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009987,GO:0010556,GO:0015035,GO:0015036,GO:0016020,GO:0016032,GO:0016043,GO:0016491,GO:0016667,GO:0016853,GO:0016860,GO:0016864,GO:0016989,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031326,GO:0032991,GO:0034641,GO:0034645,GO:0042026,GO:0043167,GO:0043169,GO:0043170,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0055114,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0140096,GO:0140110,GO:1901360,GO:1901576,GO:1903506,GO:2001141
Exons4
EggNOG free text desc.DnaJ C terminal domain
EggNOG OGs2XB20@2836,COG0484@1,KOG0712@2759
Cds size654
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.2243752-UTR-Ecto-sp13_S_contig17103:0..211681462895.2243752-UTR-Ecto-sp13_S_contig17103:0..21Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17103 1..21 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462895.2338896-CDS-Ecto-sp13_S_contig17103:21..1291681462895.2338896-CDS-Ecto-sp13_S_contig17103:21..129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17103 22..129 +
1681462895.24169-CDS-Ecto-sp13_S_contig17103:500..7821681462895.24169-CDS-Ecto-sp13_S_contig17103:500..782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17103 501..782 +
1681462895.2496474-CDS-Ecto-sp13_S_contig17103:1650..18271681462895.2496474-CDS-Ecto-sp13_S_contig17103:1650..1827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17103 1651..1827 +
1681462895.2636058-CDS-Ecto-sp13_S_contig17103:2567..26541681462895.2636058-CDS-Ecto-sp13_S_contig17103:2567..2654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17103 2568..2654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17103.5048.1prot_Ecto-sp13_S_contig17103.5048.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17103 22..2654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17103.5048.1

>prot_Ecto-sp13_S_contig17103.5048.1 ID=prot_Ecto-sp13_S_contig17103.5048.1|Name=mRNA_Ecto-sp13_S_contig17103.5048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MCVGAGQCEKNCKDCQGPGIAVRMHQLGPGFVQQVQIRDDNCIARGKCWK
KNCSACPKGPTQQEEVILTAEVQKGMRDRDTIVFEEVADEMIGHRAGHLV
FIIETLVHPDFTRRNDDLHMDMEIPLVEALSGFEVNFKHLDGHMVKVKKQ
GITSPGDVMQLKKEGMPRRGSNGKTFGSLYIRFSIAFPKALSAEQVTTLR
GVLLEGEDDQADATQEL*
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mRNA from alignment at Ecto-sp13_S_contig17103:1..2654+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17103.5048.1 ID=mRNA_Ecto-sp13_S_contig17103.5048.1|Name=mRNA_Ecto-sp13_S_contig17103.5048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17103:1..2654+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGTCTACGTCCGCCAGGCGATGTGCGTTGGGGCGGGCCAGTGCGAAAA GAACTGCAAGGATTGCCAGGGCCCCGGCATCGCCGTCAGGATGCACCAGC TCGGCCCCGGCTTCGTGCAGCAGGTTCAGGTGTGTCGCCATGCGAACCAA GCCTCTGGCTGTGGCTGCGATTCAAGGGTAGGGTTGTCGTCGTCATGGGC GATGCCGCCGCACGTTTTTCTGTTTCTTGTCGAGTTTTTCGCAACGGCTG CAAGGCGGGTGTTCTCCAAGAGGGGTTGAGTGTCTATTTGGGAGGGGTGA TTCGCAAGGTTTGCCGTTCGAGATCCTAGGGGACATGTACGAATGATGCA TCAGCCTTTGGCGGCAAACTCGCATGTTATTGTGTGCATCGTCCGTTCCC TGCGGCACGGAAGCTCTGAGGACATGTGGTCTGCGTGTCCCTCTCTCTCC CCTCCCGTTCCCCGCTGCGGTTCCCCTTCCCCCTGGCCGCCACCGAAAAG ATCCGAGACGACAACTGCATAGCGCGAGGAAAGTGCTGGAAGAAGAACTG CTCGGCTTGCCCGAAGGGTCCGACCCAACAGGAGGAGGTTATCTTGACGG CGGAGGTGCAGAAGGGCATGCGAGACAGAGACACGATCGTCTTCGAAGAG GTGGCGGACGAGATGATCGGGCACAGGGCCGGGCACCTGGTGTTCATCAT CGAGACGCTCGTCCACCCGGACTTCACGAGGAGGAACGACGACTTGCACA TGGATATGGAGATCCCGCTCGTAGAGGCCCTGGTGAGAGAGTCAGGCAGA CACACAGAGAAAGAGAGACAGTGACAGAGAGATAGCAAGTGACAGAGAGA TAGAGATAGACAGACAGACAGATAGACAAAGACAGAGACAGAGAGAACCC TCCCGCCGACCTGGGAGATGTTAGTTTAGTAAGCGAAATCATACGTTCAG ACAGACCAGTCAGTGCTGGTCAGTCTGAGGTGGCTGTTCTCATTGTTAAA TCTGTGCTTATGACTGCTTCAGTGGTGCATGTTATCGTCGATACCACGTT TAAAGAGAAGCTTCGGACAGACCTTGTGACTACATATGTCGGTTGCTCTG CTGTTGAGAGATTTTTTGTGCTTGATGTTCGAATCATTTACGATGCGGGG TGGAACAGAGTGCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNCATGGTCGTAAACGTTACCGCCTGACCTCTCCGCTCAG TCCGGTTTCGAAGTCAACTTCAAGCACTTGGACGGTCACATGGTGAAGGT GAAGAAGCAGGGTATCACGTCTCCCGGCGACGTGATGCAACTGAAGAAGG AGGGCATGCCCCGGAGAGGGAGCAATGGGAAGACCTTCGGCAGCCTCTAC ATACGATTTTCGATTGCTTTCCCCAAGGTGCGTTTTTTTATATCCTCAGC GGAGCTGTCTACGCAACGATTGAAAAATATTATGCTCACGAGCAAGGATA ACAAGAGAACAAAGTGTTTGCCAAACGTCCTGGGCATTCTTGACACCCCC TTTTCTGTAGATTCCCATCCGGACCAGAAAGTTTTTGTTGACAAGATCGC TGCGCACCGTTCTTGTGTTGCCAGCAATGCTTTGAGCCGTCGGAAGAGCC GTCATCCGCGCCGGATGAGGGTTTCTCTCCCACACTTGGCCCAAAAAGCC GCGTCTCGGTTTTGCCGCTGTGGTTCGCATAGAGTGTGTGGGTACGCGTG GTTCTGTCAAGCTTCTTTTTGTTCTTGTCAAGAGTAGATTTCCCGACCCG ACAAAGTCAAGGTAGCGCCAGGCACCTTTGCGGTACTCCCCAGTCAGGCG ACTCTCTTCTCTAGGGTTTGGTCCAGCAGCCACTGCTGTTGCTGCCGCTG CAAAACCAGTGTGGGTTCCACTTGAGGCAGACCACAGACTTTCCCCGGCA TGTATCGTTGGCGACAGCTGCTGTGGCAGTTTTTGATGTCGTGAACCGTC ACCCGACTCTCGCTGCTCTGCATCGTCGGCATGTGTCTCCTTTATCCTCG CCGGTTGTGCGGAACTGACTTAGAGCGCAGACTCCTTACCCCGATGTTAA AAGCTTTTCCGCCCGTCCGGTGCTCGCCGCTGTCTCGTTTTTTGGTGGTG TTGTTTTTGTTGCGCAGGCGCTGTCCGCCGAGCAAGTGACCACTCTGCGA GGCGTACTGCTAGAGGGGGAGGACGATCAGGCGGACGCGACGCAGGAGTT GTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17103:1..2654+

>mRNA_Ecto-sp13_S_contig17103.5048.1 ID=mRNA_Ecto-sp13_S_contig17103.5048.1|Name=mRNA_Ecto-sp13_S_contig17103.5048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17103:1..2654+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCGTTGGGGCGGGCCAGTGCGAAAAGAACTGCAAGGATTGCCAGGG
CCCCGGCATCGCCGTCAGGATGCACCAGCTCGGCCCCGGCTTCGTGCAGC
AGGTTCAGATCCGAGACGACAACTGCATAGCGCGAGGAAAGTGCTGGAAG
AAGAACTGCTCGGCTTGCCCGAAGGGTCCGACCCAACAGGAGGAGGTTAT
CTTGACGGCGGAGGTGCAGAAGGGCATGCGAGACAGAGACACGATCGTCT
TCGAAGAGGTGGCGGACGAGATGATCGGGCACAGGGCCGGGCACCTGGTG
TTCATCATCGAGACGCTCGTCCACCCGGACTTCACGAGGAGGAACGACGA
CTTGCACATGGATATGGAGATCCCGCTCGTAGAGGCCCTGTCCGGTTTCG
AAGTCAACTTCAAGCACTTGGACGGTCACATGGTGAAGGTGAAGAAGCAG
GGTATCACGTCTCCCGGCGACGTGATGCAACTGAAGAAGGAGGGCATGCC
CCGGAGAGGGAGCAATGGGAAGACCTTCGGCAGCCTCTACATACGATTTT
CGATTGCTTTCCCCAAGGCGCTGTCCGCCGAGCAAGTGACCACTCTGCGA
GGCGTACTGCTAGAGGGGGAGGACGATCAGGCGGACGCGACGCAGGAGTT
GTAG
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