mRNA_Ecto-sp13_S_contig171.5043.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig171.5043.1
Unique NamemRNA_Ecto-sp13_S_contig171.5043.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A6H5L8T9_9PHAE (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L8T9_9PHAE)

HSP 1 Score: 457 bits (1176), Expect = 2.170e-161
Identity = 234/245 (95.51%), Postives = 234/245 (95.51%), Query Frame = 1
Query:    1 MMATVERDPADWDPEDSQSGQNLLGKNGGGGKVEGGRGSPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGGLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLLTVV 735
            MMATVERDPA WDPEDSQSGQNLLGKNGG          PPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGGLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLLTVV
Sbjct:   49 MMATVERDPAGWDPEDSQSGQNLLGKNGGXXXXXXXXXXPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGGLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLLTVV 293          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: M4B6U3_HYAAE (Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B6U3_HYAAE)

HSP 1 Score: 105 bits (263), Expect = 7.960e-24
Identity = 67/209 (32.06%), Postives = 112/209 (53.59%), Query Frame = 1
Query:  127 PGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFD-DVS--TSAYSVLAYLAIGTGGL-WAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCL-----LSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLL 726
            PG  +S+CG  SL +YQPYFDVDTS+V+ +L+QA+ P+++   F  E      D YGP+W+  TLIF L+   N    +    +  E+  D S   SAY+++    +G   L W   +   VP++    + +YGYS   F+ AA LC+     + W      +A     +  F+L + W  + EH+ ++ M+ +L  ++  H++W +L+
Sbjct:   59 PGRPVSLCGCFSLSFYQPYFDVDTSDVQLRLMQALLPLKREPVF-AELAVKSPDAYGPLWLSTTLIFCLASCSNVASFLDYGGNRDEWAYDFSRLASAYTLVEIFLLGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPIDAMDWVVMLLAMA----WSLFFLLNNLWRVISEHLTKEKMLPVLAVISGTHMMWAVLM 262          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A8K1CS43_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS43_PYTOL)

HSP 1 Score: 104 bits (260), Expect = 2.310e-23
Identity = 72/231 (31.17%), Postives = 118/231 (51.08%), Query Frame = 1
Query:   49 SQSGQNLLGKNGGGGKVEGGRGSPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGE----FDDVSTSAYSVLAYLAIGTGGLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAI-FVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLL 726
            S++  NL+GK  G    E     P      + MC   SL +YQPYFDVDTS+V+ +L++A+ P +K+ SF  E  +   D YGPVW+  TLIF L+   N    +  +    E    F  V+++   V  +L      LW   +   +P+  +  + +YGYS T F+ A  +C+         +   S+  ++ FVL + W  + EH+ ++ M+ LL  +A  H++W +L+
Sbjct:   42 SKARDNLMGKKMGFSDRENDNARP------MGMCSCFSLAFYQPYFDVDTSDVQERLVRALLPFKKSPSF-NELVTKAPDAYGPVWLSTTLIFCLASCSNVASYLDFEGDRKEWSYDFSRVASACTIVEIFLVALPVLLWLVGKYVNIPMRLSSLVCLYGYSTTIFIPATFICIAPIDAVDWVVILLSMSWSLYFVLANLWTAITEHLSKEKMLPLLGFIAASHLVWAILM 265          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A8J2SR10_9STRA (Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SR10_9STRA)

HSP 1 Score: 102 bits (254), Expect = 6.670e-23
Identity = 78/226 (34.51%), Postives = 112/226 (49.56%), Query Frame = 1
Query:   19 RDPADWDPEDSQSGQNLLGKNGGGGKVEGGRGSPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASL---GEFDDVSTSAYSVLAYLAIGTGGLWAFF----RTHGVPLSFAEALSVYGYSLTPFLAAAPLCLL---SWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEK 666
            RD  D    D + G  LLG+N GG            PG     C  LS+ YY+PYFDVDT EV  +L  A++   +     G     K D YGP WV  TL+F ++V  + R  +  +A +    +F  V+ +A ++  Y+A+     WAF     + H  PL+    L V GYSL P+LAAAP C L   +WP     + AA    ++F L+++ P ++ H  EK
Sbjct:    2 RDEDDHGGPDDEDG--LLGQNAGGAA----------PG----YCACLSVAYYRPYFDVDTDEVAARLRAALFFCNEP---FGATLRGKPDAYGPWWVATTLVFAVAVTSHVRGLLGAEAGVIYEFDFSAVTFAAATIYGYVALAAATNWAFLNYSLKVHQRPLA---CLCVVGYSLVPYLAAAPACALPYLAWP----AVLAACAAQSLFALKAARPAVEPHPREK 201          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: H3GVJ5_PHYRM (Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepID=H3GVJ5_PHYRM)

HSP 1 Score: 101 bits (252), Expect = 3.090e-22
Identity = 65/209 (31.10%), Postives = 110/209 (52.63%), Query Frame = 1
Query:  127 PGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFD-DVS--TSAYSVLAYLAIGTGGL-WAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCL-----LSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLL 726
            P   + +CG  SL +YQPYFDVDTS+V+ +L++A+ P +K  +F  E      D YGP W+  TLIF L+   N    +  + +  E+  D S   SAY+++    +G   L W   +   VP++    + +YGYS   F+ AA LC+     + W      +A     +  F+L + W  + EH+ ++ M+ +L  ++  H++W +L+
Sbjct:   58 PARPMGLCGCFSLAFYQPYFDVDTSDVQQRLMRALVPFKKDPTF-AELALKAPDAYGPFWLSTTLIFCLASCSNVASYLDYEGNTDEWSYDFSRLASAYTLVEIFLMGLPMLIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCISPLDGMDWVVMLMAMA----WSLFFLLNNLWHVISEHLTKEKMLPVLAVISGAHMMWAILM 261          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A0P1A6N6_PLAHL (Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6N6_PLAHL)

HSP 1 Score: 100 bits (248), Expect = 1.110e-21
Identity = 66/210 (31.43%), Postives = 112/210 (53.33%), Query Frame = 1
Query:  124 PPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFD-DVS--TSAYSVLAYLAIGTG-GLWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCL-----LSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLL 726
            PPG    +CG  +L +YQPYFDVDTS+V+ ++++A+ P +K  +F  E      D YGP W+ +TLIF L+   NA   M  + +  E+  D S   SAY+++    +G    +W   +   VP++    + +YGYS   F+ AA LC+     + W      +  A   +  F+L + W  + EH+ ++ M+ +L  ++  H+ W +L+
Sbjct:   58 PPG----LCGCFTLSFYQPYFDVDTSDVQQRIVRALLPFKKEPAF-AELALQSPDAYGPFWLSSTLIFCLASCSNAASFMDYEGNADEWSYDFSRLASAYTLVEIFLLGLPISIWLVGKYFQVPMTLLFLVCLYGYSSIMFIPAAILCIAPVDAVDWVV----MLFAMTWSLFFLLTNLWHVISEHLTKEKMLPVLAVISGAHMSWAVLM 258          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A662XNT8_9STRA (Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNT8_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.280e-21
Identity = 64/197 (32.49%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  130 GPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAM--TDDASLGEFD-DVSTSAYSVLAYLAIGTGGL-WAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAAIFVLRSS-WPRLQEHMPEKSMVLLLTAVATYH 705
            G  + MCG L+L YY+PYFDVDT++V+ +L++A+ P +K  SF  E   +  D YGP W+  TLIF L+   N    +  T D S   +D     SAY+++    +G   L W   +   VP++    + +YGYS+  F+ AA LC +        +   ++  ++F L S+ W  + EH+ ++ M+ +L  +   H
Sbjct:   23 GNAMGMCGCLTLAYYKPYFDVDTTDVQLRLMRALVPFKKEPSF-AELAMASPDAYGPFWLSTTLIFCLASCSNVASFLDYTGDTSEWSYDFSRLASAYTLVEIFLLGLPVLIWLVGKYFQVPMTLLFLVCLYGYSMMMFIPAAILCTIPIDAMDWVVLLLAMTWSLFFLLSNLWSVISEHLTKEKMLPVLAVIRYAH 218          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A2D4BSX3_PYTIN (Protein YIPF n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSX3_PYTIN)

HSP 1 Score: 98.6 bits (244), Expect = 3.670e-21
Identity = 76/233 (32.62%), Postives = 117/233 (50.21%), Query Frame = 1
Query:   67 LLGKNGGGGKVEGGRGSPPPPGPKISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNA---------RRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGGLWAFFRTHG--VPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAASLVAA---IFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLL 723
            L+GK  G   ++ G  S  P G    MC  L+L YYQP+FDVDTS+++ ++++AI P + T SF  E  +   D YGP W+  TLIF L+   N          RR    D     F  V+T A +V+    +G   L      +G  VP+S +  + +YGYS   F+ A  +C++  P       A  +  A    F+L + W  + EH+ ++ M+ LL  +A  H++W +L
Sbjct:   34 LIGKKMG---LDDGNSSARPTG----MCSCLTLAYYQPFFDVDTSDIQQRMVRAILPFKSTPSFF-EIVAPAPDAYGPFWLSVTLIFCLASCSNVASYWDFVGDRREWVYD-----FSRVAT-ACTVVEIFLVGLPVLLWLVGKYGANVPMSLSFLMCLYGYSTAVFIPATFICMV--PLEGLDWVAVLVAMAWSLYFLLTNVWAMISEHLSKEKMLPLLAVIAASHLIWAIL 250          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A3F2RX72_9STRA (Protein YIPF n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RX72_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.810e-21
Identity = 63/205 (30.73%), Postives = 108/205 (52.68%), Query Frame = 1
Query:  139 ISMCGLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTDDASLGEFD-DVS--TSAYSVLAYLAIGTGGL-WAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCL-----LSWPFRSCGLAAASLVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLL 726
            + +CG  +L YYQP FDVDT++V+ +L++A+ P +K  +F  E      D YGP W+  TLIF L+   NA   +  +  + E+  D S   SA +++    +G   L W   +   VP++    + +YGYS+  F+ AA  C+     + W      L  A   +  F+L + W  + EH+ ++ M+ +L  ++  H+LW +L+
Sbjct:   63 MGLCGCFTLAYYQPLFDVDTTDVQLRLMRALVPFKKEPTF-AELALKAPDAYGPFWLSTTLIFCLASCSNAASFLDYEGDMNEWSYDFSRLASACTLVEIFLLGLPTLIWLVGKYFQVPMTLLFLVCLYGYSMIMFIPAAIFCVFPADAVDWVV----LLLAMSWSLFFLLNNLWSVIAEHLTKEKMLPVLAVISASHMLWAILM 262          
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Match: A0A1S3WF54_ERIEU (Protein YIPF n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S3WF54_ERIEU)

HSP 1 Score: 94.7 bits (234), Expect = 3.580e-19
Identity = 66/183 (36.07%), Postives = 97/183 (53.01%), Query Frame = 1
Query:  151 GLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGPVWVPATLIFLLSVAVNARRAMTD--DASLG---EFDDVSTSAYSVLAYLAIGTGGLWAFFRTHGV-------PLSFAEALSVYGYSLTPFLAAA-----PLCLLSWPFR--SCGLAAASLVAAIFVLRSSWPR 642
            G  + +YYQ +FDVDTS+V  ++  ++ P R   SFL      + DLYGP W+ A+L F L+++ N    +    D SL    +F  V+ +  +V  Y+++    LW F R HG        PL F E + +YGYSL+PF+ AA     P+  L W     + GL+AA LV A++ L    PR
Sbjct:   98 GFWTFEYYQSFFDVDTSQVLDRIKGSLLP-RPGHSFLRHCLRHRPDLYGPFWICASLTFALAISGNLSLLLAQRRDPSLHYTPQFHKVTAAGITVYCYVSLVPLALWGFLRWHGGARGRPRRPLGFLETVCLYGYSLSPFVPAAVLWFVPVAWLHWLLGGLALGLSAAGLVMALWPLLRGDPR 279          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig171.5043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8T9_9PHAE2.170e-16195.51Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
M4B6U3_HYAAE7.960e-2432.06Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidi... [more]
A0A8K1CS43_PYTOL2.310e-2331.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J2SR10_9STRA6.670e-2334.51Protein YIPF n=1 Tax=Pelagomonas calceolata TaxID=... [more]
H3GVJ5_PHYRM3.090e-2231.10Protein YIPF n=25 Tax=Phytophthora TaxID=4783 RepI... [more]
A0A0P1A6N6_PLAHL1.110e-2131.43Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=47... [more]
A0A662XNT8_9STRA1.280e-2132.49Protein YIPF n=2 Tax=Nothophytophthora sp. Chile5 ... [more]
A0A2D4BSX3_PYTIN3.670e-2132.62Protein YIPF n=1 Tax=Pythium insidiosum TaxID=1147... [more]
A0A3F2RX72_9STRA8.810e-2130.73Protein YIPF n=1 Tax=Phytophthora kernoviae TaxID=... [more]
A0A1S3WF54_ERIEU3.580e-1936.07Protein YIPF n=1 Tax=Erinaceus europaeus TaxID=936... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig171contigEcto-sp13_S_contig171:28756..32120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score479.9
Seed ortholog evalue6.9e-133
Seed eggNOG ortholog2880.D7FQK8
Preferred nameYIPF3
Model size738
KEGG koko:K00688,ko:K15149
KEGG ReactionR02111
KEGG Pathwayko00500,ko01100,ko01110,ko02026,ko04217,ko04910,ko04922,ko04931,map00500,map01100,map01110,map02026,map04217,map04910,map04922,map04931
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016021,GO:0016192,GO:0017016,GO:0017137,GO:0019899,GO:0030133,GO:0031224,GO:0031267,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0051020,GO:0051179,GO:0051234,GO:0097708
Exons4
EggNOG free text desc.Rab GTPase binding
EggNOG OGsKOG3114@1,KOG3114@2759
Ec32 ortholog descriptionYip1 domain
Ec32 orthologEc-01_009070.1
EC2.4.1.1
Cds size738
COG Functional cat.S
CAZyGT35
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.871242-CDS-Ecto-sp13_S_contig171:28755..287981681462894.871242-CDS-Ecto-sp13_S_contig171:28755..28798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 28756..28798 +
1681462894.8842115-CDS-Ecto-sp13_S_contig171:28989..292521681462894.8842115-CDS-Ecto-sp13_S_contig171:28989..29252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 28990..29252 +
1681462894.9004037-CDS-Ecto-sp13_S_contig171:30736..309281681462894.9004037-CDS-Ecto-sp13_S_contig171:30736..30928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 30737..30928 +
1681462894.9092188-CDS-Ecto-sp13_S_contig171:31880..321201681462894.9092188-CDS-Ecto-sp13_S_contig171:31880..32120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig171 31881..32120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig171.5043.1prot_Ecto-sp13_S_contig171.5043.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig171 28756..32120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig171.5043.1

>prot_Ecto-sp13_S_contig171.5043.1 ID=prot_Ecto-sp13_S_contig171.5043.1|Name=mRNA_Ecto-sp13_S_contig171.5043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=246bp
MMATVERDPADWDPEDSQSGQNLLGKNGGGGKVEGGRGSPPPPGPKISMC
GLLSLQYYQPYFDVDTSEVKTKLLQAIWPMRKTASFLGEGDSSKVDLYGP
VWVPATLIFLLSVAVNARRAMTDDASLGEFDDVSTSAYSVLAYLAIGTGG
LWAFFRTHGVPLSFAEALSVYGYSLTPFLAAAPLCLLSWPFRSCGLAAAS
LVAAIFVLRSSWPRLQEHMPEKSMVLLLTAVATYHVLWFLLLTVV*
back to top

mRNA from alignment at Ecto-sp13_S_contig171:28756..32120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig171.5043.1 ID=mRNA_Ecto-sp13_S_contig171.5043.1|Name=mRNA_Ecto-sp13_S_contig171.5043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig171:28756..32120+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCCACAGTGGAGCGAGATCCAGCAGACTGGGATCCAGGTGAAGA AATTTTCCAAAACTAGTCTACCCTTCGTCGTTCCATTGTTCCGGCCTCTT GGTCGGTCGATGGTAGAGCTAACGAGCAGTGTGAGCGCTCCAGCCCATGG TCGTCCTACCCTTGTATCCCTCCCGCCCTCATGTCTCCTTATCTCCGCCG CAAACCGTCGTCGCGATTGATCGCACTTAATCAGAGGATTCCCAAAGCGG GCAGAACCTTCTGGGTAAGAACGGCGGTGGTGGAAAGGTAGAAGGAGGGC GAGGTTCTCCACCTCCACCCGGCCCCAAGATTAGCATGTGTGGGCTGCTG TCGCTGCAGTACTACCAGCCGTACTTCGACGTGGACACGAGCGAAGTAAA GACAAAGCTACTGCAAGCAATATGGCCGATGCGTAAGACGGCTTCGTTCC TTGGAGAGGGAGACTCCTCCAAAGTCGACCTGTACGGCCCGGTTTGGGTG AGTGGACGACGCCATTGTCGTACAAATCGGTCACTTCTGCAGTCATGGGA CATAGGCATCGACGAATCTATTTTCTGCGCTACCGTCATGTAGCCTTTTC CATGTCCAGATTTACCTGCTTCTAACGCAACAGTAACCACAGGTGTTGCC GTCTAAACATATATTGCCTTTTTTTTTTTTACCGACACTACTATTCCTGG AATCACATCCCGAGGCAGTCTTGCCGCGTGGGACCTTTAGTTGTTCTGCT GCATTTCTCGCTGTAGCGCTGATCCCAAATCGTGCACACCATCTATGCGT TTCCCACATGTAAAGACGCATACCCACCAATTTTTGTCAGGTTTGGTTCA GGTTAGGTACTAGACCAACGGGGTCATGGGTCCGTTGCGTGCTTCCATGG CTTAGATTTCGATTACATTTTTGGAGGTAGGCTCATGATCGTCCTCTCTG CTGACTACTGGAGTTTAGACTTGAATCTGGGCCGACTTTCGCAGGCCCAC TTCGATCGCTGTAGTGGAGATCCTTAATCGTGCACATCATGCATTCGTTC TATGGTGTTTTGTCTCTACCATGGCCAAGTATCGGCCTAATTGGGAGACC GTAGTGCCCAGGCGACCGCAGGTAAGAGTTGTCTGACGAGAGCTGAAAAG GTTGCGCGCAGCAGCAGAGAGCTGGTTCAACTCAGGTTTGATCGTGAGGC ATTTCTCGCGTCCAAAGCAAAAGCAAAGGGTAAAAACAGCTTTCCGGTGG AGGGTATGACCTGCTTGAGGTGCCCGTGTAGTTTGGAGGCACGCAGAGGT CTGTGTGAGGAGCGCGAGGTGGTGAAAGAACTGGACTCAGCCATGTCCAA TCTGGGGAGGGGATGAAACGAAATTGTCCCCGCTGAAACCAGCGGCATGA TTTTTTTCAATTTCCTATAGGCGGCAACATGTGTGTAACTTGTTGTGATG CATCCCGGAATCTACAGCGTCTTCGCTGTCGGCGGAGATTTACCGACCAC GAGAGAGCACCACCGACCTCTCCCCCCCACCCTATCTCCACGATTCTCCG CCTGCAGTGGTATGTTGTTGCTCCCGTTTGACCATTCTTGCGTTTTTTAG ACGCACTCCACCATGACACTTGCTTTTTGATGTTGGGTGTCTCTTTAGAA TACAACGCTCACGGGGTCGTGTGCCAACGACCATACGTTTGAGGACGTAG CAGAGGGTAAGACTTGATCCATCTATGGCACGTGTTGGGATCAGCATCAG CCCGCATCATGTATAACGAGTTGTATCTCCCGTCCAGCGTTGTTGCTCCC CCTGGTCGGGTGAAAACCCGGCGTGCTCCGTCCCGGCGTTGTTGTGGATG CGAGGCCAACGGTCTAACAACTACGGCATGCACGGCTATGAGCGTACACA CCCGTTCTTGTTTCAACGACACGAGTACACACTTCGTTGGTTCACGTTTC TCCCGCCCGTGCCGATACGCACTCCGCGCAGGTACCCGCGACCCTGATTT TCTTGCTCTCCGTCGCGGTAAACGCTCGACGAGCGATGACGGATGACGCC TCCTTGGGGGAGTTCGATGACGTGTCGACGAGCGCTTACTCGGTGCTGGC CTATCTGGCCATCGGTACCGGCGGGCTCTGGGCTTTCTTCCGGACGCACG GCGTGCCTCTGTCTTTTGCCGAGGTACCTGGCCAAGAGCAATATTCATTT GGTCTGTGTATTCCTCTCTATTTTTGTAATGGTATGGGTAACAGAGAGCG CTGCATCCTGGCACATTCTCAGAGCCAGTCCTATTCCCGCGGGAGAGAGT TTTTCTTGCAAACTCACGGATTTATTTGATCACCCGAGCGTGACTTGTGC TGCGACAAATAATATTTGTATACCTATAGTCGAGTGTGAGCTGCGTGTGC TGTCTACGTCTAGCCTTGGCGTGCCTCTGCGCCATTTCAGACGATGACTC GTTCGTGCGTTTTCATCGGACTGGGCACCTTCTACGTATGTGCTGGGTGT TGACCTTGAAACCAAGGGCTGCGAAAAGAGGCGGAAAGATGGCACCGCCC CCCCCTAGACCAATTTTCAAGCTCGATTGAATCAAAACCAAGATTGTGCC AACATCATGAATGGTGGTTTTGGAAGCACATCGTCGACCACTTTCCGTTG ACGTATCGGGCTCGCTCTGCATCCACTTGTTGGAGGAGCACTTGAGCTTT GAGAGTCGGTCTAGAGGGGCTGCCATCTCTCCGCCTCTTGTGGTATATTT GCCCCTCGGGTACAGAATAAGGTTGAGAGGGTAAAGAGCGGGGACAACGT TTTATTTTTTGACCTACTCCAAGTTGTACACGGTACTGCTGTACGCATAT GATGAGATACGGCTCCTTTTTTTTTCCTTCCCGTGTTCTATCGATTGTTG CATGCAAGAGGGAGGAGCCCGGGAGCTGCCGAGCTTGTACGGCGATGTGA TCCCCCCTTCCGCCGTTCCCTCGCGGCGGATAGACTGTTGTCCTCGTCCA TTTGCGGTTGTGTTTTCCATGCCCGCGTGCCTCAACCTCTCTTTTGCTCC GCCTCCGATTGTTCCTGTTTTGTGTTTCGTCGCACCCTCCGCACCCCCTG GCCTGCCTGCGTGCCTTGTCCGCAGGCCCTCAGCGTATACGGTTATTCTC TCACCCCTTTCCTAGCGGCGGCCCCCCTCTGCCTGTTGTCCTGGCCGTTC CGATCGTGCGGCCTCGCAGCGGCGAGTCTGGTGGCGGCGATTTTCGTCCT CCGGAGCTCCTGGCCCCGGCTGCAAGAGCACATGCCCGAGAAGTCTATGG TGCTCCTCTTAACGGCGGTTGCCACTTACCACGTGTTGTGGTTCCTGTTG CTCACTGTTGTCTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig171:28756..32120+

>mRNA_Ecto-sp13_S_contig171.5043.1 ID=mRNA_Ecto-sp13_S_contig171.5043.1|Name=mRNA_Ecto-sp13_S_contig171.5043.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig171:28756..32120+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCCACAGTGGAGCGAGATCCAGCAGACTGGGATCCAGAGGATTC
CCAAAGCGGGCAGAACCTTCTGGGTAAGAACGGCGGTGGTGGAAAGGTAG
AAGGAGGGCGAGGTTCTCCACCTCCACCCGGCCCCAAGATTAGCATGTGT
GGGCTGCTGTCGCTGCAGTACTACCAGCCGTACTTCGACGTGGACACGAG
CGAAGTAAAGACAAAGCTACTGCAAGCAATATGGCCGATGCGTAAGACGG
CTTCGTTCCTTGGAGAGGGAGACTCCTCCAAAGTCGACCTGTACGGCCCG
GTTTGGGTACCCGCGACCCTGATTTTCTTGCTCTCCGTCGCGGTAAACGC
TCGACGAGCGATGACGGATGACGCCTCCTTGGGGGAGTTCGATGACGTGT
CGACGAGCGCTTACTCGGTGCTGGCCTATCTGGCCATCGGTACCGGCGGG
CTCTGGGCTTTCTTCCGGACGCACGGCGTGCCTCTGTCTTTTGCCGAGGC
CCTCAGCGTATACGGTTATTCTCTCACCCCTTTCCTAGCGGCGGCCCCCC
TCTGCCTGTTGTCCTGGCCGTTCCGATCGTGCGGCCTCGCAGCGGCGAGT
CTGGTGGCGGCGATTTTCGTCCTCCGGAGCTCCTGGCCCCGGCTGCAAGA
GCACATGCCCGAGAAGTCTATGGTGCTCCTCTTAACGGCGGTTGCCACTT
ACCACGTGTTGTGGTTCCTGTTGCTCACTGTTGTCTAA
back to top