mRNA_Ecto-sp13_S_contig17092.5038.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17092.5038.1
Unique NamemRNA_Ecto-sp13_S_contig17092.5038.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: A0A6H5K9F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9F7_9PHAE)

HSP 1 Score: 272 bits (696), Expect = 2.860e-84
Identity = 144/270 (53.33%), Postives = 177/270 (65.56%), Query Frame = 1 
Query:  322 HGPLPPHQAKLFETVKTSVAHPSFSANRAKLEEIAQKHTKETGMRVGVSTEDVILEACREYSLGTMFALRQLSQRRLTNLERREAGIEVFDRRKTYGDAFNYCNIYAFSNERATLDMVDRWQTEMGVGTQLCGAVRSKIERHDWSGGVALRLLISGEGLPPAAGKYASTLLNPPTAARAKQPRLVNGRVGNDGPAWNVAAGMALVGGGALGTVGTETYVWKTGDPYRSSRELHEALLMLGFLGGLVWNPASVGLNQKVGGTFNDEQRSRG 1131
            H PL PHQA+LFE VK +V HPSF++NRAKL +IA++     G+    ST+DV+ EACREY L  +                                  NY + + F ++  T+ M  +W++EMGVG+  CG+VR+K+ RH+W  G ALRLLISGE L  +A KY   L  PP AARA++P  +NGRV NDGPAWNV AG+ LVG  A+ TVG+ETYVW+ GDPYRSSRELHEA+L L  LGGLVW P SVGLNQKVGGTF DEQRSRG
Sbjct:  102 HAPLEPHQAELFERVKAAVDHPSFASNRAKLADIAREAATAKGIGGEASTDDVLREACREYDLHRV----------------------------------NYVHAHEFHSQETTIGMTRKWESEMGVGSAFCGSVRAKVNRHEWDNG-ALRLLISGERLSASALKYTKGLQKPPIAARARRPHQLNGRVANDGPAWNVPAGLVLVGADAIDTVGSETYVWRMGDPYRSSRELHEAILALDVLGGLVWCPESVGLNQKVGGTFTDEQRSRG 336
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: A0A6H5KF00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF00_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 1.610e-58
Identity = 107/184 (58.15%), Postives = 129/184 (70.11%), Query Frame = 1 
Query:  580 IEVFDRRKTYGDAFNYCNIYAFSNERATLDMVDRWQTEMGVGTQLCGAVRSKIERHDWSGGVALRLLISGEGLPPAAGKYASTLLNPPTAARAKQPRLVNGRVGNDGPAWNVAAGMALVGGGALGTVGTETYVWKTGDPYRSSRELHEALLMLGFLGGLVWNPASVGLNQKVGGTFNDEQRSRG 1131
            +E  D  + +    NY N+Y +S++ A L MV  W +EMGVG QLCGAVR+KI  HDW+ G  LRL++SGEGL  +A KY   LLNPPT  RA+ PR  NGRV NDG AW V AG+ L G G L  V  ETY+W+TGDP+ SSRELHEA+L LGFL GLV++  S  LNQK+GGTF DEQR RG
Sbjct:    1 MERLDITRRFKGRCNYFNVYRWSDKAAALRMVGAWGSEMGVGVQLCGAVRAKINGHDWTAG-PLRLVMSGEGLLDSAAKYDKGLLNPPTEERARLPRQENGRVANDGRAWLVPAGLVLAGDGTLQIVTWETYIWRTGDPHLSSRELHEAILPLGFLRGLVFSRGSTSLNQKLGGTFTDEQRRRG 183
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: A0A6H5K367_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K367_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 1.920e-47
Identity = 90/140 (64.29%), Postives = 106/140 (75.71%), Query Frame = 1 
Query:  637 YAFSNERATLDMVDRWQTEMGVGTQLCGAVRSKIERHDWSGGVALRLLISGEGLPPAAGKYASTLLNPPTAARAKQPRLVNGRVGNDGPAWNVAAGMALVGGGALGTVGTETYVWKTGDPYRSSRELHEALLMLGFLGGL 1056
            Y F  +  TL MV+   +E GVG+ LCG+VR+K+ RHDW  G ALRLLISGEGL  +A KYA  L  PPTA RA++PR VNGRV NDGPAWNV AG+ LVG  A+  VGTETYVW+TGDP+RSSREL +A+L L FLGGL
Sbjct:   24 YEFLCKETTLAMVEG--SEKGVGSALCGSVRAKVNRHDWGSG-ALRLLISGEGLSASAHKYARGLQQPPTAVRAREPRQVNGRVANDGPAWNVPAGLVLVGVDAINEVGTETYVWRTGDPHRSSRELQDAVLALVFLGGL 160
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: A0A6H5KLA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA4_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.950e-46
Identity = 96/211 (45.50%), Postives = 128/211 (60.66%), Query Frame = 1 
Query:  343 QAKLFETVKTSVAHPSFSAN-RAKLEEIAQKHTKETGMRVGVSTEDVILEACREYSLGTMFALRQLSQRRLTNLERREAGIEVFDRRKTYGDAFNYCNIYAFSNERATLDMVDRWQTEMGVGTQLCGAVRSKIERHDWSGGVALRLLISGEGLPPAAGKYASTLLNPPTAARAKQPRLVNGRVGNDGPAWNVAAGMALVGGGALGTVGTET 972
            Q +L E VK ++  PSFS + R K EEI +   +  GM  G + EDV+  AC +Y+LG   AL  + +R L+  + +++G+E  +    + +  NY  +Y FS+  A   MVD W   +G+G QLCGA R KI  HD+     LRL+ISGEG   +A KY + L+NPPT  RAK+PR   GRV NDGPAW V AG+ L GGGAL TV  ET
Sbjct:   73 QLELIERVKVAMDDPSFSCSQRVKFEEICEGAAEPMGM-AGATPEDVLKVACSKYTLGRTLALDAMRERELSLSQLQKSGVERLNLGSPFKEKTNYATVYVFSDRAAANRMVDMWANVIGIGAQLCGAYRKKINEHDFGDRRFLRLMISGEGGWQSAAKYGTGLINPPTEERAKKPRQKYGRVANDGPAWLVPAGLVLAGGGALKTVTWET 282
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: D7FV88_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV88_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.660e-31
Identity = 63/86 (73.26%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:  874 VNGRVGNDGPAWNVAAGMALVGGGALGTVGTETYVWKTGDPYRSSRELHEALLMLGFLGGLVWNPASVGLNQKVGGTFNDEQRSRG 1131
            VNGRV NDGPAWN+ AG+ L G  A+ TV +ETYVW+TGDP+RSSRELHEA+L L FLGGLVW+  S GLNQKVGGTF DEQR RG
Sbjct:  149 VNGRVANDGPAWNIPAGLVLAGAEAIDTVTSETYVWRTGDPHRSSRELHEAILALVFLGGLVWSKESAGLNQKVGGTFTDEQRERG 234
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: A0A6H5JI61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI61_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.440e-27
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 1 
Query:  385 PSFSANRAKLEEIAQKHTKETGMRVGVSTEDVILEACREYSLGTMFALRQLSQRRLTNLERREAGIEVFDRRKTYGDAFNYCNIYAFSNERATLDMVDRWQTEMGVGTQLCGAVRSKIERHDW 753
            P+F++NRAK+ EIA++  K  GM    S  DV+ EAC EY L  + AL QL  R  T+ E ++ GIEVFD+ K +G   NY + Y F  +  TL MV+ W++EMGVG+ LCG+VR+K+ RH+W
Sbjct:    8 PTFASNRAKMGEIAREVAKAKGMGGDASIYDVLREACGEYGLNQVLALDQLRNRPFTDNEMKKGGIEVFDQGKDHGGQVNYVHAYEFWCKETTLAMVEAWESEMGVGSALCGSVRAKVNRHEW 130
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BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Match: A0A6H5K9F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9F5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.280e-21
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 1 
Query:  925 MALVGGGALGTVGTETYVWKTGDPYRSSRELHEALLMLGFLGGLVWNPASVGLNQKVGGTFNDEQRSRG 1131
            + LVG  A+  VGTETY W+TGDP+RSSRE HEA+L L FLGGLVW P S+ LNQKVGGTFND+QRSRG
Sbjct:  223 LVLVGADAINEVGTETYAWRTGDPHRSSREPHEAILALVFLGGLVWCPESIALNQKVGGTFNDDQRSRG 291
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17092.5038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5K9F7_9PHAE2.860e-8453.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF00_9PHAE1.610e-5858.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K367_9PHAE1.920e-4764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLA4_9PHAE1.950e-4645.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV88_ECTSI1.660e-3173.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI61_9PHAE2.440e-2747.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9F5_9PHAE1.280e-2172.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17092contigEcto-sp13_S_contig17092:605..3072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1135
Hectar predicted targeting categoryother localisation
Exons3
Cds size1131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.468578-CDS-Ecto-sp13_S_contig17092:606..14311681462894.468578-CDS-Ecto-sp13_S_contig17092:606..1431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17092 607..1431 -
1681462894.477621-CDS-Ecto-sp13_S_contig17092:1965..20671681462894.477621-CDS-Ecto-sp13_S_contig17092:1965..2067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17092 1966..2067 -
1681462894.486097-CDS-Ecto-sp13_S_contig17092:2868..30721681462894.486097-CDS-Ecto-sp13_S_contig17092:2868..3072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17092 2869..3072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17092.5038.1prot_Ecto-sp13_S_contig17092.5038.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17092 607..3072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17092.5038.1

>prot_Ecto-sp13_S_contig17092.5038.1 ID=prot_Ecto-sp13_S_contig17092.5038.1|Name=mRNA_Ecto-sp13_S_contig17092.5038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
ESAPAAASARGGSDLVGQARPGSASRGPWTSFSGLQSSPGLQSSEEGAGG
GRAVRTSQSSFFSQESVKSVPTSSDDDKGHTPPSSSFKGKRKQVVGVCTD
PEVVREHHGPLPPHQAKLFETVKTSVAHPSFSANRAKLEEIAQKHTKETG
MRVGVSTEDVILEACREYSLGTMFALRQLSQRRLTNLERREAGIEVFDRR
KTYGDAFNYCNIYAFSNERATLDMVDRWQTEMGVGTQLCGAVRSKIERHD
WSGGVALRLLISGEGLPPAAGKYASTLLNPPTAARAKQPRLVNGRVGNDG
PAWNVAAGMALVGGGALGTVGTETYVWKTGDPYRSSRELHEALLMLGFLG
GLVWNPASVGLNQKVGGTFNDEQRSRG
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mRNA from alignment at Ecto-sp13_S_contig17092:605..3072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17092.5038.1 ID=mRNA_Ecto-sp13_S_contig17092.5038.1|Name=mRNA_Ecto-sp13_S_contig17092.5038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17092:605..3072- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATCTGCGCCCGCGGCTGCGTCTGCGCGGGGAGGTTCAGATTTAGTCGG
CCAAGCACGCCCAGGGAGCGCTTCGCGTGGACCCTGGACGTCGTTTTCTG
GCTTACAGAGTTCCCCTGGCCTACAATCGTCTGAGGAGGGGGCCGGCGGA
GGACGAGCTGTGCGGACATCCCAATCTTCGTTCTTCAGCCAAGAGTCTGT
CAAGGTGCGTGCGGTTTTGCCAATCACATGCAGTTTCCATCCCATCATAC
TTGGTGCGCTGCACTTCCCCCGCCGGTGTTGTCTTGCTCCTCCCACCACG
TCGTGCCTGTTTTCAAAATAATCGTGTGCGTGTGTGATGTATGGCCTCTT
TTGTCTTTCGCGGGGCGTACTCGTCCCGTCCCCCCGAAAAACTCGGACAA
ATGCCCATGTAGCACAGCCATCTCTTGTCGGAGCACCACGAAACCGGCGT
GACGGGCAGTGCTCTATTTAGATTTCCTCTCAGAAGCTAACAAATCGTCA
ATCGATGCTCTATATGTGTTGTTCTGGTCAAAATGGGGAGTATTTATATA
AAGAGGTGGTACCAAGTTTGGAGGGGCGCTATACGCGATCAGAGGAACAT
TGGCCGATATATAGAGCCTTTTTCCCCCTACTCCTGGGGGATGACATGAA
AAAAATGTCGCGGTTTCGCCCGTCCGCGGCTCATTATTTACAAATATACG
AATTCGCTGATGATAACAAGTAACGCCTCCTTTGTTTTCGATCTCGCCCT
CTGAACCTTCCACGCGCGAGCACCTTCCACTGTTTTGTTGACGTGCACCC
TCCACCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCC
CCCCCACCCCCCCCCCCCCCCCCCCCNNNNNNNNNNCCCTCCTTTTTTTT
CTTTTCCCCCCCCCTACCCCCCCCCCCCCGACCCCCCCCCCCTTTTTTTT
TGCCTGCCCCCCCCCCCCCCCCCCCCCCCCCAATACGCTCATGATCAACT
CCCAGTCCGTCCCGACGTCCAGTGACGATGACAAGGGACACACGCCCCCG
AGCTCCTCGTTCAAGGGAAAGAGAAAGCAAGTGGTTGGCGTTTGTACAGA
CCCCGAGGTGAGAGGGCACATCCACGGTCTCCTGTGTACGCGTGCACTGT
GTATGTGTTCATTCATCACGGCTCAGACCGTAGCACTATTAGCCGAACTC
CCTATCTTATCTGATCCGCGTGGAATGAGAATATTTTCAATTGTGAGAGG
TGGTGGTAGTTGCGACTTTGTTTCATGCATGCGTCGTAGATACCTCAGAT
ATCAGCTAACTGAGTAGTTTTGTAGGGGCCAAGGCGGGGAAAGCGTGATG
TCTAAATGTAGCACGTGACCTCGTGGGGGGCATCCATCCATCGCCCTGCG
GTGTAGTTTTGCATCGTATCTCACCAGCACCTTCTCTCCCGTCCAGGAAC
CCTGTTTGAAGTAAAAACAAATGGCGTGCATCTTTTGGGTCTGGATATGC
ATGGTTTTGCGAATTTGTGATTTTCTCCCGCGCGTAACCCCAACCCTTAC
GAATTGTTGCGGTCTTCTAACGTTTTCGTAACGCATCGCCCCCTTCCCCT
GCCTGCCTCGCCACCCTCCCTCCCTCCCCGTGTCCTTGTAGGTCGTGCGC
GAGCACCACGGACCCCTGCCACCCCATCAGGCCAAACTGTTCGAGACGGT
GAAGACATCCGTGGCTCACCCCTCGTTCTCCGCCAATCGCGCCAAGCTGG
AGGAAATCGCACAGAAACACACCAAAGAGACAGGCATGCGGGTCGGGGTG
TCGACGGAGGATGTTATCCTGGAAGCCTGTCGGGAGTACTCTCTCGGGAC
GATGTTTGCGCTCAGGCAGCTGTCCCAGAGGCGCCTCACCAACTTAGAGA
GGCGTGAAGCCGGGATCGAGGTGTTCGATCGCCGCAAGACATACGGGGAT
GCCTTCAACTACTGCAACATCTACGCCTTTTCGAACGAGAGGGCAACGCT
TGACATGGTCGACAGGTGGCAGACCGAGATGGGCGTTGGGACCCAGCTCT
GCGGCGCGGTCCGTAGCAAAATCGAACGGCACGACTGGAGCGGCGGGGTT
GCGCTGCGTCTCTTGATTTCCGGCGAAGGGCTACCGCCCGCGGCGGGCAA
GTACGCCAGCACGCTGCTGAATCCACCAACGGCAGCTCGCGCCAAACAGC
CTCGCCTTGTGAATGGCCGGGTAGGTAACGACGGACCTGCGTGGAACGTG
GCGGCGGGTATGGCGTTGGTCGGGGGAGGCGCCCTGGGGACCGTGGGCAC
CGAGACGTACGTGTGGAAGACGGGTGACCCCTACAGGTCGTCACGGGAGC
TACACGAAGCTCTACTCATGCTCGGCTTCTTGGGGGGGCTGGTGTGGAAT
CCCGCTTCAGTCGGCCTGAACCAGAAGGTCGGGGGGACGTTCAACGACGA
GCAGCGTTCTCGCGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17092:605..3072-

>mRNA_Ecto-sp13_S_contig17092.5038.1 ID=mRNA_Ecto-sp13_S_contig17092.5038.1|Name=mRNA_Ecto-sp13_S_contig17092.5038.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17092:605..3072- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATCTGCGCCCGCGGCTGCGTCTGCGCGGGGAGGTTCAGATTTAGTCGG
CCAAGCACGCCCAGGGAGCGCTTCGCGTGGACCCTGGACGTCGTTTTCTG
GCTTACAGAGTTCCCCTGGCCTACAATCGTCTGAGGAGGGGGCCGGCGGA
GGACGAGCTGTGCGGACATCCCAATCTTCGTTCTTCAGCCAAGAGTCTGT
CAAGTCCGTCCCGACGTCCAGTGACGATGACAAGGGACACACGCCCCCGA
GCTCCTCGTTCAAGGGAAAGAGAAAGCAAGTGGTTGGCGTTTGTACAGAC
CCCGAGGTCGTGCGCGAGCACCACGGACCCCTGCCACCCCATCAGGCCAA
ACTGTTCGAGACGGTGAAGACATCCGTGGCTCACCCCTCGTTCTCCGCCA
ATCGCGCCAAGCTGGAGGAAATCGCACAGAAACACACCAAAGAGACAGGC
ATGCGGGTCGGGGTGTCGACGGAGGATGTTATCCTGGAAGCCTGTCGGGA
GTACTCTCTCGGGACGATGTTTGCGCTCAGGCAGCTGTCCCAGAGGCGCC
TCACCAACTTAGAGAGGCGTGAAGCCGGGATCGAGGTGTTCGATCGCCGC
AAGACATACGGGGATGCCTTCAACTACTGCAACATCTACGCCTTTTCGAA
CGAGAGGGCAACGCTTGACATGGTCGACAGGTGGCAGACCGAGATGGGCG
TTGGGACCCAGCTCTGCGGCGCGGTCCGTAGCAAAATCGAACGGCACGAC
TGGAGCGGCGGGGTTGCGCTGCGTCTCTTGATTTCCGGCGAAGGGCTACC
GCCCGCGGCGGGCAAGTACGCCAGCACGCTGCTGAATCCACCAACGGCAG
CTCGCGCCAAACAGCCTCGCCTTGTGAATGGCCGGGTAGGTAACGACGGA
CCTGCGTGGAACGTGGCGGCGGGTATGGCGTTGGTCGGGGGAGGCGCCCT
GGGGACCGTGGGCACCGAGACGTACGTGTGGAAGACGGGTGACCCCTACA
GGTCGTCACGGGAGCTACACGAAGCTCTACTCATGCTCGGCTTCTTGGGG
GGGCTGGTGTGGAATCCCGCTTCAGTCGGCCTGAACCAGAAGGTCGGGGG
GACGTTCAACGACGAGCAGCGTTCTCGCGGA
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