mRNA_Ecto-sp13_S_contig17091.5037.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17091.5037.1
Unique NamemRNA_Ecto-sp13_S_contig17091.5037.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5L703_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L703_9PHAE)

HSP 1 Score: 415 bits (1066), Expect = 4.520e-135
Identity = 216/273 (79.12%), Postives = 221/273 (80.95%), Query Frame = 2
Query:   74 MVLSASSREGLTKLVTLRDQQELSTSQLGDIKEHLLNNEPLSHDFWKGIEELRSLRSSSDIPMLEEHVQHLNEHVASLLKKKTPVPTPPELADGSSAQQFVGQKRKA*SSSTASAQKKGRAASNPPAGTHNIINASAKGSGKPVVRTRGDGSTEEITSINFAAPPPPQPTVHCTKCNRRFFNTQGLGVHIKTDHEREAKISVQRWCSTNRKGAGASSLLPWGGTPSGRCWHVAFHHGESRGCGATCPSGSVTFVL*PLRPGAERNNNLVIDGF 892
            MVLSASSREGLTKLVTLRDQQEL TSQLGDIK+HLLNNE LSHD W+GIEELRSLRSS DI  LEEHVQHLNEHVAS LKKK P                                  GRAASNPP GTHNI NA AKGS KPVVRTRGDG TEEIT+INFAAPPPPQPTV CTKCNRRFFNT+GLGVHIKTDHEREAKISVQRWCSTNRKGAGASSLLPWGGTPSGRCWHVAFHHGESRGCGATCP GSV+FVL PLRPGAERNNNLV  GF
Sbjct:    1 MVLSASSREGLTKLVTLRDQQELWTSQLGDIKKHLLNNESLSHDCWEGIEELRSLRSS-DILTLEEHVQHLNEHVASHLKKKAPASXXXXXXXXXX----------------------GRAASNPPVGTHNITNAFAKGSDKPVVRTRGDGRTEEITNINFAAPPPPQPTVPCTKCNRRFFNTRGLGVHIKTDHEREAKISVQRWCSTNRKGAGASSLLPWGGTPSGRCWHVAFHHGESRGCGATCPPGSVSFVLQPLRPGAERNNNLVNGGF 250          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 454 bits (1167), Expect = 1.400e-133
Identity = 360/938 (38.38%), Postives = 469/938 (50.00%), Query Frame = 2
Query:  113 LVTLRDQQELSTSQLGDIKEHLLNNEPLSHDFWKGIEELRSLRSSSDIPMLEEHVQHLNEHVASLLKKKTPVPTPPELADGSSAQQFVGQKRKA*SSSTASAQKKGRA-ASNPPAGTHNIINASAKGSGKPVVRTRGDGSTEEITSINFAAPPPPQPTVHCTKCNRRFFNTQGLGVHIKTDHEREAKISVQRWCSTNRKGAGASSLLPWGGTPSGRCWHVAFHHGESRGCGATCPSGSVTFVL*PLRPGAERNNNLVIDGFHK-RSRHQRQRVEQPRGDGTPRARRSVSLGAARSRVAVNGGSCALRYDPSLLLGT*VRDLSQQYQQMAEG*RLSRAAGS*QGAE*SDSDMHSTAAVVP*RGEGAVQDVAGTT-------QEEAAGLDKVDHGHFQK-AYHGNVPARSTSKGIPAVLPVRAKVGDETLAV*AAAV*LQEQV------CGGETAENPEMAQGVPKAPATASCTWREGHPVGATSTCLGRRIRRATKGADPLRRTLRQVGALREGAEGQHRPGTVGVRERTGRHLGQKRGEAGACWPAIPRLG------EAAVHGATDDRSRREKDEVRDHLPRQRNRYHQGGEGSIRQARRCLLPAQGLGRQRLLHAMAGALFSPEPNGRREGARGAAASSRRQPAWADD*GIRKYLHKECNTLLWHLPAGCTDEVQPIDAGYGRRLKVAVGVQLDKWLESGDNLQKWEAKALTCSERRVLLTSWVAQATEEVDKDEQCRFRLFEKTGCGMTADGSGDDKINLEGLS-TYSFMDVQDGAGTDEE--------------GKKDGDTG-NVGVDQLSE-DASSSXXXXXXXXXXXXDPLTQLHEDDELSPEEETLKMDIPDGFRLQASPPPALDQSIVQRGVLVKLGLGWFGEVISRRSHPASRQEYDYRVILHCDESTRSMKMPLESYSTDGDAAIGAWV 2809
            L+ ++DQ  L+  Q+ DIK+HLL+ + L   F+  I  LR+ R+  D+    EH   LN+H+ + +KK T +  P     GSS++   G KRKA SS     ++KGRA A+   AGT NI+NA  + +G+P+VRTR DGSTE I  I F  PPP  P V C KC+R FFN QGLGVH+KTDH+ + +I V RWCST       SS LPW G PSGRCW V FHH  S   G   P GS             R    V++   +  SR Q  R      + TP    S   G A + ++        + +   LL    + + ++          SR       AE +   M+        R       V           ++  A   +  +   QK A+  ++  R  S G       + K  +E L    A +    ++      CGGE    P+           A   W    P    +T      +  T   +    +  Q GA R     Q  PG +  R+ T +      G+   C       G      E A +    D   + K    D+               ++   RC  P+       L+ A  G +   +     +   G                 RKYL+KECNTLLW LPAGCTDE+QP+DAG GRR+K  +G QLD WLE GDNLQ+WE  +LT SERRVLLT WVA+  E+++ D+Q R RLFEKTG GMTADGSGD++INLEG+S   +FMD   G  + E               G+  GD G  +G D  SE DASS             DPLTQLH+DD+L   EE+L+MDIPDGF+LQASPP ALDQS+V+RGVLVKLGLGWFG VISRR+HPASR EYDYRV+LH D STRSMK+PLESYSTD DA +G+WV
Sbjct: 1107 LLAIKDQ--LTGGQVSDIKQHLLDKKTLPSTFFSDIASLRNQRAH-DLLSETEHSTLLNDHINAHVKK-TQMAAPAGSTGGSSSE-LTGVKRKAASSGP---KRKGRARAAAGIAGTPNIVNAFVRATGEPMVRTRKDGSTENIMDITFPDPPPLTPKVPCPKCHRLFFNNQGLGVHVKTDHKDDVRIGVTRWCSTASAVVDPSSTLPWSGVPSGRCWRVKFHHQAS---GLASPRGSYD----------PREKLSVVEQLRELESRAQEVRAH---FNLTPLGYLSNKTGIAVANIS------KWQREEEKLLEVAAKSVKKKLFDTK-----SRPKRWFPEAEQALYTMYRERRKKKVRVSTRWLTVTFRKLLAEKYPEDPRAKTFRASYRWAQKWAHRHSLSMRRKSNG-------KNKSSEERLPKINAWLKRYRELLREPRRCGGELVPWPQQVPQEASGDLQAHHKWGRFLPDERLNT-----DQVPTGFVNGQVDSWEQTGARRVHIM-QPFPG-LEKRQCTVQPTFGPGGKVMKCAIIFRGKGTGISKVEKAAYDKRVDVFFQPKAWADDNF-------------CMQWLERCFRPS-------LMAASGGKVPDAQTVLLADNLHGQTTEK-----------FRKYLYKECNTLLWLLPAGCTDELQPVDAGMGRRMKTGMGRQLDSWLEHGDNLQQWEDGSLTASERRVLLTQWVAEVIEKINADQQYRSRLFEKTGTGMTADGSGDERINLEGVSGPLNFMDADVGGSSGEXXXXXXXXXXNPGEGGRGGGDLGLQLGGDSESEEDASSCDESDGDDEKQSEDPLTQLHDDDQLCAGEESLEMDIPDGFQLQASPPSALDQSLVKRGVLVKLGLGWFGGVISRRAHPASRDEYDYRVVLHSDGSTRSMKLPLESYSTDEDAGVGSWV 1964          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5JD00_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD00_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 6.020e-110
Identity = 196/315 (62.22%), Postives = 207/315 (65.71%), Query Frame = 3
Query: 1593 FVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCAIIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSFRPSRMVDGKVPEEQPLLLADNLHGQTTEEFVSISIRSATRFF----GTCRQAVRT------RSSRSTPAMDGD*RWL*GCSWTSGWRAET-TCKSGRPKH*RVPNVACCLPVGWHRRPRRSI-KMSNVGSVSSRKPDVE*RRMALGTTKSTSRAFPHIPSWMCRMAPALMRRARRMATLAMLAWTSCRRTPLPAMMRVTETMTTIRTR 2501
            FVKELRDN DQVPLGFV+GQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPT GAGGKKTRCA IFRGKGTGITKVEKAAYDKR DVFFQPKAWADSDFCMQWLERSFRPSRMVDGKVPEEQ LLLADNLHGQTTEEF          FF      C   V+       R  +    +  D +WL        W A+  TC   R            L   W  +    I K          K          G   STSRAFPHIPSWM R+APALMRRARRM T A L WTSCR+TPLPA+ R  ETMTT+R R
Sbjct:   11 FVKELRDNADQVPLGFVTGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTTGAGGKKTRCATIFRGKGTGITKVEKAAYDKRLDVFFQPKAWADSDFCMQWLERSFRPSRMVDGKVPEEQSLLLADNLHGQTTEEFRKYE--ECNTFFWHLPAGCTDEVQPIDAGYGRRLKVAVGVQLD-KWLESGDNLQKWEAKALTCSERR-----------LLLTSWVAQATEEIDKQEQYRIRLFEKTGCGMTADGSGDDNSTSRAFPHIPSWMWRVAPALMRRARRMGTPARLTWTSCRKTPLPALTRAMETMTTMRIR 311          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5KIC9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIC9_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.220e-104
Identity = 166/184 (90.22%), Postives = 170/184 (92.39%), Query Frame = 3
Query: 1209 MLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRPSFRFAQKWATRHSPSKRRRSNS---KNKSVEERLPKIRKWHREFQKLLQQPRVHGGKVIPWEPQAPVSDGGSVEQPRALIPYEGPYGKWGRFVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIG 1751
            MLLARRKRKLRVSTRWITVTFKKLIME YPQ PRAKAFRP FRFAQKWAT+ S SKRRR  +   KNKSV ERLPKIRKWHREF+KLLQQPRVHGGKVIPWEPQAPVSD  SVEQP ALIPYEGPYGKWGRFVKELRDNTDQVPLGFV+GQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIG
Sbjct:    1 MLLARRKRKLRVSTRWITVTFKKLIMERYPQDPRAKAFRPPFRFAQKWATKRSLSKRRRIQTWATKNKSVVERLPKIRKWHREFRKLLQQPRVHGGKVIPWEPQAPVSDERSVEQPGALIPYEGPYGKWGRFVKELRDNTDQVPLGFVTGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIG 184          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5JKG3_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG3_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 4.000e-92
Identity = 172/344 (50.00%), Postives = 229/344 (66.57%), Query Frame = 3
Query:  978 ELRDLESRSTEVRAHFGMTPLFYLEHKSGISASNISKWRKDEDSLVQQAADKVRSSLIATCTRRRLWFPDAEKELYKMLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRPSFRFAQKWATRHSPSKRRRSNSKNKSVEERLPKIRKWHREFQKLLQQP-RVHGGKVIPWEPQAPVSDGGSVEQPRALIPYEGPYGKWGRFVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCAIIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSFRPSRMVD-GKVPEEQPLLLADNLHGQTTEEF 2003
            +LR L+  + +V     +TPL YLE +  ++ S I KW +DE ++VQ AAD V+ +L+A    +R WFP+ EK+LY   LARR+RKL+VST W+TVTF+KL+ E +P+  RA AF  SFR+A+KWA RH  SKRRRSN KNKSVEERLPKI+++HR F+KLLQ+P R    +       + V++G S +             K+G+F    R N DQVPL FV+G   TW+K GA RV + QPF GLEKRQCT+Q   G G K  R ++IFRG+G  I+ VEKAAY K  DVFFQ  AWAD  FCM+W +RS+R   +   G++P+ + +L+ DNLH QTT+EF
Sbjct:  110 QLRLLQEDAADVFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKR-WFPEEEKKLYNTFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDP------------KYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEF 440          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5KDV1_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV1_9PHAE)

HSP 1 Score: 315 bits (808), Expect = 9.090e-92
Identity = 171/344 (49.71%), Postives = 230/344 (66.86%), Query Frame = 3
Query:  978 ELRDLESRSTEVRAHFGMTPLFYLEHKSGISASNISKWRKDEDSLVQQAADKVRSSLIATCTRRRLWFPDAEKELYKMLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRPSFRFAQKWATRHSPSKRRRSNSKNKSVEERLPKIRKWHREFQKLLQQP-RVHGGKVIPWEPQAPVSDGGSVEQPRALIPYEGPYGKWGRFVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCAIIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSFRPSRMVD-GKVPEEQPLLLADNLHGQTTEEF 2003
            +LR L+  + ++     +TPL YLE +  ++ S I KW +DE ++VQ AAD V+ +L+A    +R WFP+ EK+LY M LARR+RKL+VST W+TVTF+KL+ E +P+  RA AF  SFR+A+KWA RH  SKRRRSN KNKSVEERLPKI+++HR F+KLLQ+P R    +       + V++G S +             K+G+F    R N DQVPL FV+G   TW+K GA RV + QPF GLEKRQCT+Q   G G K  R ++IFRG+G  I+ VEKAAY K  DVFFQ  AWAD  FCM+W +RS+R   +   G++P+ + +L+ DNL+ QTT+EF
Sbjct:  178 QLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKR-WFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDP------------KYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLYAQTTDEF 508          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5JFX9_9PHAE (C2H2-type domain-containing protein n=15 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX9_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 4.270e-90
Identity = 172/344 (50.00%), Postives = 230/344 (66.86%), Query Frame = 3
Query:  978 ELRDLESRSTEVRAHFGMTPLFYLEHKSGISASNISKWRKDEDSLVQQAADKVRSSLIATCTRRRLWFPDAEKELYKMLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRPSFRFAQKWATRHSPSKRRRSNSKNKSVEERLPKIRKWHREFQKLLQQP-RVHGGKVIPWEPQAPVSDGGSVEQPRALIPYEGPYGKWGRFVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCAIIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSFRPSRMVD-GKVPEEQPLLLADNLHGQTTEEF 2003
            +LR L+  + ++     +TPL YLE +  ++ S I KW +DE ++VQ AAD V+ +L+A    +R WFP+ EK+LY M LARR+RKL+VST W+TVTF+KL+ E +P+  RA AF  SFR+A+KWA RH  SKRRRSN KNKSVEERLPKI+++HR F+KLLQ+P R    +       + V++G S +             K+G+F    R N DQVPL FV+G   TW+K GA RV + QPF GLEKRQCT+Q   G G K  R ++IFRG+G  I+ VEKAAY K  DVFFQ  AWAD  FCM+W +RS+R   +   G++P+ + +L+ DNLH QTT+EF
Sbjct:  292 QLRLLQEDAADLFKEEQLTPLQYLEDRLKVNYSLIVKWAQDEANIVQSAADDVKKTLLAKQQPKR-WFPEEEKKLYNMFLARRRRKLKVSTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDP------------KYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRISVIFRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEF 622          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5JMI5_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMI5_9PHAE)

HSP 1 Score: 296 bits (757), Expect = 2.450e-88
Identity = 139/149 (93.29%), Postives = 141/149 (94.63%), Query Frame = 2
Query:  446 PPAGTHNIINASAKGSGKPVVRTRGDGSTEEITSINFAAPPPPQPTVHCTKCNRRFFNTQGLGVHIKTDHEREAKISVQRWCSTNRKGAGASSLLPWGGTPSGRCWHVAFHHGESRGCGATCPSGSVTFVL*PLRPGAERNNNLVIDGF 892
            PPAGTHNIINA AKGSGKPVVRTRGDGSTEEIT+INF APPPPQPTV CTKCNRRFFNTQGLGVHIKTDHEREAKIS+QRWCSTNRKGA ASSLLPWGGTPSGRC HVAFHHGESRGCGATCP GSVTFVL PLRPGAERNNNLV DGF
Sbjct:   32 PPAGTHNIINAFAKGSGKPVVRTRGDGSTEEITNINFTAPPPPQPTVPCTKCNRRFFNTQGLGVHIKTDHEREAKISLQRWCSTNRKGAEASSLLPWGGTPSGRCCHVAFHHGESRGCGATCPPGSVTFVLQPLRPGAERNNNLVNDGF 180          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5KZ92_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ92_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 3.520e-88
Identity = 166/343 (48.40%), Postives = 223/343 (65.01%), Query Frame = 3
Query:  981 LRDLESRSTEVRAHFGMTPLFYLEHKSGISASNISKWRKDEDSLVQQAADKVRSSLIATCTRRRLWFPDAEKELYKMLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRPSFRFAQKWATRHSPSKRRRSNSKNKSVEERLPKIRKWHREFQKLLQQP-RVHGGKVIPWEPQAPVSDGGSVEQPRALIPYEGPYGKWGRFVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCAIIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSFRPSRMVD-GKVPEEQPLLLADNLHGQTTEEF 2003
            LR L+  + ++     +TP  YLE +  ++ S I KW +DE ++VQ  AD V+ +L+A    +R WFP+ EK+L  + LARR+RKL+V T W+TVTF+KL+ E +P+  RA AF  SFR+A+KWA RH  SKRRRSN KNKSVEERLPKI+++HR F+KLLQ+P R    +       + V++G S +             K+G+F    R N DQVPL FV+G   TW+K GA RV + QPF GLEKRQCT+Q   G G K  R  +I RG+G  I+ VEKAAY K  DVFFQ  AWAD  FCM+W +RS+R   +   G++P+ + +L+ DNLH QTT+EF
Sbjct:  139 LRLLQEDAADLFKEEQLTPRQYLEDRLKVNYSLIVKWAQDEANIVQSEADDVKKTLLAKQQPKR-WFPEEEKKLCNIFLARRRRKLKVPTLWLTVTFRKLVQENHPEDQRAAAFSASFRWARKWAKRHKLSKRRRSNLKNKSVEERLPKIQRFHRRFRKLLQEPVRYRAPEASDVSAMSTVAEGESRDP------------KYGQFQLWERWNVDQVPLPFVNGLISTWEKTGALRVAISQPFAGLEKRQCTMQVIFGPGEKTMRILVILRGQGKRISPVEKAAYHKDVDVFFQENAWADQKFCMEWAKRSYREGLIRGRGELPKARSILIMDNLHAQTTDEF 468          
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Match: A0A6H5KVP8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP8_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 4.480e-88
Identity = 171/345 (49.57%), Postives = 215/345 (62.32%), Query Frame = 3
Query:  978 ELRDLESRSTEVRAHF-GMTPLFYLEHKSGISASNISKWRKDEDSLVQQAADKVRSSLIATCTRRRLWFPDAEKELYKMLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRPSFRFAQKWATRHSPSKRRRSNSKNKSVEERLPKIRKWHREFQKLLQQPRVHGGKVIPWEPQAPVSDGGSVEQP-RALIPYEGPYGKWGRFVKELRDNTDQVPLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCAIIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSF-RPSRMVDGKVPEEQPLLLADNLHGQTTEEF 2003
            ELR+LE+   E   H  G++   +L  K+GIS  NI KW  D + L+  AA+ +++ L  T   RR WF DAEK+L+ +LL RR RKLRVST WI V  +KL++E YP  PRAK F  S R+ +K+A RH  SKRRR+N KNKSVE+RLP++R + R  ++LLQ+  V                GG+ E    A++P E P   +G F      N DQV L FV+G + TWD+ GA RV +GQPFPGLEKRQCTV   IGAG K  R A+IFRGKG  ++ VEKAAYD   DV FQ  AW D   CM W + SF R     +G VPEEQ +L ADNLH QTT+EF
Sbjct:   61 ELRELEADDAEKIWHVHGVSCQQFLARKTGISQPNICKWNGDAEKLIAAAANDLKNDLFKTGRERR-WFGDAEKKLHSLLLQRRTRKLRVSTAWIRVNARKLVVEMYPDDPRAKNFSASDRWCRKFAKRHHLSKRRRTNMKNKSVEDRLPQMRSFRRRLRQLLQELPVRRAAA-----------GGAAENNGAAIVPVESPL--YGGFSLNAHFNVDQVGLAFVNGPDSTWDETGALRVQIGQPFPGLEKRQCTVNCCIGAGDKLMRTAVIFRGKGK-VSAVEKAAYDPGVDVLFQENAWMDGPMCMAWAKNSFLRSIEGEEGVVPEEQSILFADNLHAQTTDEF 390          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17091.5037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L703_9PHAE4.520e-13579.12C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JH58_9PHAE1.400e-13338.38Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JD00_9PHAE6.020e-11062.22DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIC9_9PHAE1.220e-10490.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JKG3_9PHAE4.000e-9250.00DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KDV1_9PHAE9.090e-9249.71C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JFX9_9PHAE4.270e-9050.00C2H2-type domain-containing protein n=15 Tax=Ectoc... [more]
A0A6H5JMI5_9PHAE2.450e-8893.29C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZ92_9PHAE3.520e-8848.40DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KVP8_9PHAE4.480e-8849.57HTH CENPB-type domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17091contigEcto-sp13_S_contig17091:71..3558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score315.8
Seed ortholog evalue2.5e-83
Seed eggNOG ortholog2880.D7G0Q3
Model size2811
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2DCSR@1,2S5KN@2759
Cds size1077
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.3971686-UTR-Ecto-sp13_S_contig17091:70..5721681462894.3971686-UTR-Ecto-sp13_S_contig17091:70..572Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17091 71..572 +
1681462894.4121778-UTR-Ecto-sp13_S_contig17091:1093..16191681462894.4121778-UTR-Ecto-sp13_S_contig17091:1093..1619Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17091 1094..1619 +
1681462894.4352694-UTR-Ecto-sp13_S_contig17091:2696..30651681462894.4352694-UTR-Ecto-sp13_S_contig17091:2696..3065Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17091 2697..3065 +
1681462894.4437218-UTR-Ecto-sp13_S_contig17091:3221..35581681462894.4437218-UTR-Ecto-sp13_S_contig17091:3221..3558Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17091 3222..3558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.4237676-CDS-Ecto-sp13_S_contig17091:1619..26961681462894.4237676-CDS-Ecto-sp13_S_contig17091:1619..2696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17091 1620..2696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17091.5037.1prot_Ecto-sp13_S_contig17091.5037.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17091 1620..2696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17091.5037.1

>prot_Ecto-sp13_S_contig17091.5037.1 ID=prot_Ecto-sp13_S_contig17091.5037.1|Name=mRNA_Ecto-sp13_S_contig17091.5037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=359bp
MTPLFYLEHKSGISASNISKWRKDEDSLVQQAADKVRSSLIATCTRRRLW
FPDAEKELYKMLLARRKRKLRVSTRWITVTFKKLIMETYPQGPRAKAFRP
SFRFAQKWATRHSPSKRRRSNSKNKSVEERLPKIRKWHREFQKLLQQPRV
HGGKVIPWEPQAPVSDGGSVEQPRALIPYEGPYGKWGRFVKELRDNTDQV
PLGFVSGQEDTWDKRGAKRVHVGQPFPGLEKRQCTVQPTIGAGGKKTRCA
IIFRGKGTGITKVEKAAYDKRADVFFQPKAWADSDFCMQWLERSFRPSRM
VDGKVPEEQPLLLADNLHGQTTEEFVSISIRSATRFFGTCRQAVRTRSSR
STPAMDGD*
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mRNA from alignment at Ecto-sp13_S_contig17091:71..3558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17091.5037.1 ID=mRNA_Ecto-sp13_S_contig17091.5037.1|Name=mRNA_Ecto-sp13_S_contig17091.5037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3488bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17091:71..3558+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCTAACGCTTTGGCACAGCACACCAGACAGGCTGCGAACCACGACAT GCTCTCTGCTGTACACGGCTTTGATGGTTCTCTCCGCCAGCTCTCGTGAG GGCTTGACCAAGCTTGTCACCCTCAGAGATCAACAAGAACTGTCGACGAG CCAGCTCGGGGACATCAAGGAGCACCTTCTAAACAACGAGCCCCTGTCTC ACGATTTCTGGAAAGGCATTGAAGAGCTGCGGAGTTTGAGGTCTTCTTCC GATATCCCTATGTTGGAGGAGCATGTGCAGCATCTCAACGAACATGTGGC GTCCCTCCTCAAGAAAAAGACCCCGGTGCCAACCCCTCCTGAATTGGCTG ATGGTTCAAGCGCACAGCAGTTCGTAGGGCAGAAGCGAAAGGCATGATCG TCTTCAACAGCATCAGCCCAGAAAAAGGGGAGGGCAGCATCCAACCCGCC GGCAGGGACTCACAACATCATCAATGCCTCCGCTAAAGGCAGTGGCAAAC CGGTGCGTAGAAGATGTTTGTGTGTGCCGACGAGAGGGTCTCGCGCAATA ATTAAAAATATAAATTATTCGGCGCCACTGAGATGCGGACAGTGTGTATT GTTGGCATCGAATGCTCTGCGTTGTGAGTCTCTTTCGGTTTGCGTGGTTT CTTCTCCTATTATTTGTCTTCGATTTACGTCATACCGGTGCTGCTGTGAA CCACGTGAATGATCCCAACACTTGGATTTTTTGTTGAAATGCGCATAAAA ATGATTTTTGAGCCGCTTTTGCACGCACTTAATGGCAAGAACATGTCTGT AGCAGTAAGTCACCAGCGTGCCTCCGTACCAGGTTCGCCTCTTTTTTTGT CAACCCTTTCCGACATGCGTCTTCATACATGCTGCTGTGCTGGCCTTACC CGCGGCAGCACTCTTTGTTGAACGAGTTTATGTTGCTATCTTGCAAACAA CAAATAATAAACTCGAGCAGGAATGAACAATACTACCGCCCTTTCATGTC CTCCCTCCCCCATTTCTGTGCAGGTGGTGCGTACGCGTGGGGACGGCAGC ACGGAGGAGATCACGAGCATCAATTTTGCCGCGCCTCCACCGCCTCAACC GACAGTGCATTGTACGAAGTGCAACCGTCGTTTCTTCAACACCCAGGGCC TTGGGGTGCACATCAAAACTGACCACGAGCGTGAAGCGAAGATCTCAGTT CAACGATGGTGTTCAACGAACAGGAAGGGGGCGGGGGCATCATCTCTCCT CCCTTGGGGTGGGACACCGTCAGGACGTTGCTGGCACGTTGCGTTTCACC ATGGAGAGAGTCGCGGATGCGGCGCGACATGTCCGTCAGGGTCCGTGACG TTTGTGCTGTAGCCTTTACGCCCTGGAGCCGAGCGGAACAACAACCTCGT GATCGACGGTTTTCACAAACGGAGTCGCCACCAAAGACAACGTGTGGAGC AGCCTCGAGGAGACGGTACACCTCGCGCGAGAAGGTCGGTGTCATTGGGA GCTGCGAGATCTAGAGTCGCGGTCAACGGAGGTTCGTGCGCACTTCGGTA TGACCCCTCTCTTTTACTTGGAACATAAGTCAGGGATCTCAGCCAGCAAT ATCAGCAAATGGCGGAAGGATGAAGACTCTCTCGTGCAGCAGGCAGCTGA CAAGGTGCGGAGTAGTCTGATAGCGACATGCACTCGACGGCGGCTGTGGT TCCCTGACGCGGAGAAGGAGCTGTACAAGATGTTGCTGGCACGACGCAAG AGGAAGCTGCGGGTCTCGACAAGGTGGATCACGGTCACTTTCAAAAAGCT TATCATGGAAACGTACCCGCAAGGTCCACGAGCAAAGGCATTCCGGCCGT CCTTCCGGTTCGCGCAAAAGTGGGCGACGAGACACTCGCCGTCTAAGCGG CGGCGGTCTAACTCCAAGAACAAGTCTGTGGAGGAGAGACTGCCGAAAAT CCGGAAATGGCACAGGGAGTTCCAAAAGCTCCTGCAACAGCCTCGTGTAC ATGGAGGGAAGGTCATCCCGTGGGAGCCACAAGCACCTGTCTCGGACGGA GGATCCGTCGAGCAACCAAGGGCGCTGATCCCCTACGAAGGACCCTACGG CAAGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGGTAC CGTTGGGGTTCGTGAGCGGACAGGAAGACACCTGGGACAAAAGAGGGGCG AAGCGGGTGCATGTTGGCCAGCCATTCCCCGGCTTGGAGAAGCGGCAGTG CACGGTGCAACCGACGATAGGAGCAGGCGGGAAAAAGACGAGGTGCGCGA TCATCTTCCGCGGCAAAGGAACCGGTATCACCAAGGTGGAGAAGGCAGCA TACGACAAGCGCGCAGATGTCTTCTTCCAGCCCAAGGCCTGGGCCGACAG CGACTTCTGCATGCAATGGCTGGAGCGCTCTTTTCGCCCGAGCCGAATGG TAGACGGGAAGGTGCCCGAGGAGCAGCCGCTTCTTCTCGCCGACAACCTG CATGGGCAGACGACTGAGGAATTCGTAAGTATCTCCATAAGGAGTGCAAC ACGCTTCTTTGGCACCTGCCGGCAGGCTGTACGGACGAGGTCCAGCCGAT CGACGCCGGCTATGGACGGCGACTGAAGGTGGCTGTAGGGGTGCAGCTGG ACAAGTGGCTGGAGAGCGGAGACAACCTGCAAAAGTGGGAGGCCAAAGCA CTGACGTGTTCCGAACGTCGCGTGTTGCTTACCAGTTGGGTGGCACAGGC GACCGAGGAGGTCGATAAAGATGAGCAATGTCGGTTCCGTCTCTTCGAGA AAACCGGATGTGGAATGACGGCGGATGGCTCTGGGGACGACAAAATCAAC CTCGAGGGCCTTTCCACATATTCCTTCATGGATGTGCAGGATGGCGCCGG CACTGATGAGGAGGGCAAGAAGGATGGCGACACTGGCAATGTTGGCGTGG ACCAGCTGTCGGAGGACGCCTCTTCCAGCGATGATGAGAGTGACGGTAAG TGATGTTGTATTTCGCGTTCATTCGGAGCACAGAAGAATTATCCTTGCGG AAGAAAGCTCCTCTTGTTGACACAATAATGAGTGTTGGAATGTTGTCCCC GCTTCGGGAATCGCCACAACAGTAGACGATGCCTCCGCTGTGCCTTGTCA GGAGACGATGACAACGATAAGGACCCGCTGACCCAGCTCCACGAAGATGA CGAATTGTCGCCTGAGGAAGAAACGCTGAAGATGGACATCCCGGACGGGT TTCGACTCCAGGCGTCTCCACCACCGGCCCTCGATCAGTCGATAGTGCAG CGTGGGGTTCTCGTGAAACTCGGGTTGGGTTGGTTCGGAGAGGTAATTAG TCGCAGATCTCACCCCGCTTCGCGGCAGGAGTACGACTACCGCGTCATTC TGCACTGCGACGAAAGCACGCGTAGCATGAAGATGCCGTTGGAGTCGTAC AGCACGGATGGAGACGCCGCAATTGGGGCGTGGGTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17091:71..3558+

>mRNA_Ecto-sp13_S_contig17091.5037.1 ID=mRNA_Ecto-sp13_S_contig17091.5037.1|Name=mRNA_Ecto-sp13_S_contig17091.5037.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17091:71..3558+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCCCTCTCTTTTACTTGGAACATAAGTCAGGGATCTCAGCCAGCAA
TATCAGCAAATGGCGGAAGGATGAAGACTCTCTCGTGCAGCAGGCAGCTG
ACAAGGTGCGGAGTAGTCTGATAGCGACATGCACTCGACGGCGGCTGTGG
TTCCCTGACGCGGAGAAGGAGCTGTACAAGATGTTGCTGGCACGACGCAA
GAGGAAGCTGCGGGTCTCGACAAGGTGGATCACGGTCACTTTCAAAAAGC
TTATCATGGAAACGTACCCGCAAGGTCCACGAGCAAAGGCATTCCGGCCG
TCCTTCCGGTTCGCGCAAAAGTGGGCGACGAGACACTCGCCGTCTAAGCG
GCGGCGGTCTAACTCCAAGAACAAGTCTGTGGAGGAGAGACTGCCGAAAA
TCCGGAAATGGCACAGGGAGTTCCAAAAGCTCCTGCAACAGCCTCGTGTA
CATGGAGGGAAGGTCATCCCGTGGGAGCCACAAGCACCTGTCTCGGACGG
AGGATCCGTCGAGCAACCAAGGGCGCTGATCCCCTACGAAGGACCCTACG
GCAAGTGGGGGCGCTTCGTGAAGGAGCTGAGGGACAACACCGACCAGGTA
CCGTTGGGGTTCGTGAGCGGACAGGAAGACACCTGGGACAAAAGAGGGGC
GAAGCGGGTGCATGTTGGCCAGCCATTCCCCGGCTTGGAGAAGCGGCAGT
GCACGGTGCAACCGACGATAGGAGCAGGCGGGAAAAAGACGAGGTGCGCG
ATCATCTTCCGCGGCAAAGGAACCGGTATCACCAAGGTGGAGAAGGCAGC
ATACGACAAGCGCGCAGATGTCTTCTTCCAGCCCAAGGCCTGGGCCGACA
GCGACTTCTGCATGCAATGGCTGGAGCGCTCTTTTCGCCCGAGCCGAATG
GTAGACGGGAAGGTGCCCGAGGAGCAGCCGCTTCTTCTCGCCGACAACCT
GCATGGGCAGACGACTGAGGAATTCGTAAGTATCTCCATAAGGAGTGCAA
CACGCTTCTTTGGCACCTGCCGGCAGGCTGTACGGACGAGGTCCAGCCGA
TCGACGCCGGCTATGGACGGCGACTGA
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