mRNA_Ecto-sp13_S_contig17087.5034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17087.5034.1
Unique NamemRNA_Ecto-sp13_S_contig17087.5034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17087.5034.1 vs. uniprot
Match: A0A6H5KP05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP05_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.050e-34
Identity = 77/91 (84.62%), Postives = 83/91 (91.21%), Query Frame = 1 
Query:    1 VTDVATGDSPIDGLVDVSRAPGAGDDRPAETAVALDSPGQDAHDASTAADKPDGKIYSSPGQLSSGPGERAKEATAGDGVTTSLEPADARS 273
            V DV TGDSPID LVDVSRA GAGDDRP+E AVA+DSPGQD++DA TAADKPDGKI SS GQ+SSGPGERAKEATAGDGVTTSLEPADAR+
Sbjct: 2393 VADVGTGDSPIDRLVDVSRASGAGDDRPSENAVAVDSPGQDSNDALTAADKPDGKIGSSSGQVSSGPGERAKEATAGDGVTTSLEPADARA 2483
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BLAST of mRNA_Ecto-sp13_S_contig17087.5034.1 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 2.310e-33
Identity = 77/91 (84.62%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 VTDVATGDSPIDGLVDVSRAPGAGDDRPAETAVALDSPGQDAHDASTAADKPDGKIYSSPGQLSSGPGERAKEATAGDGVTTSLEPADARS 273
            V  VATG SPIDGLVDVSRA GAGDDRPAETAVA+D PG D+HDA TAADKPDGKI SS GQ SSG GERAKEATAGDGVTTSLEPADAR+
Sbjct: 3532 VAHVATGGSPIDGLVDVSRALGAGDDRPAETAVAVDIPGPDSHDALTAADKPDGKIGSSSGQFSSGSGERAKEATAGDGVTTSLEPADARA 3622
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17087.5034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KP05_9PHAE1.050e-3484.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBP6_ECTSI2.310e-3384.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17087contigEcto-sp13_S_contig17087:226..898 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size673
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.1361525-UTR-Ecto-sp13_S_contig17087:225..2321681462894.1361525-UTR-Ecto-sp13_S_contig17087:225..232Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17087 226..232 +
1681462894.1601956-UTR-Ecto-sp13_S_contig17087:643..8981681462894.1601956-UTR-Ecto-sp13_S_contig17087:643..898Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17087 644..898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462894.1469686-CDS-Ecto-sp13_S_contig17087:232..6431681462894.1469686-CDS-Ecto-sp13_S_contig17087:232..643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17087 233..643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17087.5034.1prot_Ecto-sp13_S_contig17087.5034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17087 233..643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17087.5034.1

>prot_Ecto-sp13_S_contig17087.5034.1 ID=prot_Ecto-sp13_S_contig17087.5034.1|Name=mRNA_Ecto-sp13_S_contig17087.5034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MSPREIRPLTDWWMFLEPLVLGMTGRRRLLSLWTVQVRTPMTLRRRPTSR
MGRFILHRGNFRVAREKGQRKRQPEMVSPRRSSPRTQGRVSGVCACSSSS
QGPCWCCMPRDVCPLVVCGGLPTSSPSHASSTTHRI*
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mRNA from alignment at Ecto-sp13_S_contig17087:226..898+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17087.5034.1 ID=mRNA_Ecto-sp13_S_contig17087.5034.1|Name=mRNA_Ecto-sp13_S_contig17087.5034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=673bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17087:226..898+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTACTGATGTCGCCACGGGAGATTCGCCCATTGACGGATTGGTGGATGT
TTCTCGAGCCCCTGGTGCTGGGGATGACCGGCCGGCGGAGACTGCTGTCG
CTTTGGACAGTCCAGGTCAGGACGCCCATGACGCTTCGACGGCGGCCGAC
AAGCCGGATGGGAAGATTTATTCTTCACCGGGGCAACTTTCGAGTGGCCC
GGGAGAAAGGGCAAAGGAAGCGACAGCCGGAGATGGTGTCACCACGTCGC
TCGAGCCCGCGGACGCAAGGTCGAGTGTCGGGCGTGTGCGCCTGCAGCTC
ATCTTCTCAAGGCCCTTGCTGGTGTTGCATGCCGCGCGATGTGTGTCCTC
TAGTTGTATGCGGTGGTCTCCCGACCTCCTCACCTAGTCATGCATCGAGT
ACGACGCATCGAATTTGAGACTCCACGTAGCTGTAAGATCAATCCAACTG
GAATTCTGACAGAACCCATCCATTGTGAGGTGAAACATGAACGGTGTCAA
TGTCACGAGACCCTTTGGACACAACCATCAACTGCCGAGAGGCCCCCCAC
TTCTCATTGACCTACCAGAATCACCAATCGAACACCGCAACAATACGTGT
GGCATTACCACAATGTAACAATTTAGTCAGCAGTAATCCTCTCGGTCCTC
ATAGACCTTCATTTCATTCGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17087:226..898+

>mRNA_Ecto-sp13_S_contig17087.5034.1 ID=mRNA_Ecto-sp13_S_contig17087.5034.1|Name=mRNA_Ecto-sp13_S_contig17087.5034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17087:226..898+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCCACGGGAGATTCGCCCATTGACGGATTGGTGGATGTTTCTCGA
GCCCCTGGTGCTGGGGATGACCGGCCGGCGGAGACTGCTGTCGCTTTGGA
CAGTCCAGGTCAGGACGCCCATGACGCTTCGACGGCGGCCGACAAGCCGG
ATGGGAAGATTTATTCTTCACCGGGGCAACTTTCGAGTGGCCCGGGAGAA
AGGGCAAAGGAAGCGACAGCCGGAGATGGTGTCACCACGTCGCTCGAGCC
CGCGGACGCAAGGTCGAGTGTCGGGCGTGTGCGCCTGCAGCTCATCTTCT
CAAGGCCCTTGCTGGTGTTGCATGCCGCGCGATGTGTGTCCTCTAGTTGT
ATGCGGTGGTCTCCCGACCTCCTCACCTAGTCATGCATCGAGTACGACGC
ATCGAATTTGA
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