mRNA_Ecto-sp13_S_contig17077.5030.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17077.5030.1
Unique NamemRNA_Ecto-sp13_S_contig17077.5030.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 4.290e-44
Identity = 95/143 (66.43%), Postives = 97/143 (67.83%), Query Frame = 3 
Query:    3 KGVFQPEVQLVKRQSGENTAQQRQKHWSPVVQSDGRVFCRHVLCS*GLDLATCFGSQYRIDHVISADTVPLRGWENAGAGQLLLRSTCWSISSYKPDREGATTVFHTPAEAEAIGVRGLPPATFVMSPEDLIVARVRDIDDKV 431
            KGVFQPEVQLVKRQSGE                                             VISADTVPLRGWE+AGAGQLLLRSTCWSISSYKPDREGATTVF+TPAEAEA GVRGLPPATFVMSPEDLIVARVRDIDDKV
Sbjct:  382 KGVFQPEVQLVKRQSGE---------------------------------------------VISADTVPLRGWEHAGAGQLLLRSTCWSISSYKPDREGATTVFYTPAEAEATGVRGLPPATFVMSPEDLIVARVRDIDDKV 479
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: F0XVF2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVF2_AURAN)

HSP 1 Score: 143 bits (361), Expect = 3.540e-35
Identity = 83/205 (40.49%), Postives = 117/205 (57.07%), Query Frame = 3 
Query:  201 DTVPLRGWENAGAGQLLLRST--------CWSISSYKPDREGATTVFHTPAEAEAIGV-RGLPPATFVMSPEDLIVARVRDIDDKVSWALGRGDFSG---AVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDLAAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR 779
            + +P+ G+E  GAG   L ST         W    +    +G    F     A+A  + RG PP  +V+SP D+++ARVRD+DD++   L RGD +G   A+AIA      +R+H   DLV  HL+ L+  G+ + AAA CP+ L   +T WE WI+ F RR  L  + P +PT EPRL PSVY++VLERLL T+P   L  ++R
Sbjct:  308 EALPVAGFEACGAGDYQLASTYDVACAAGTWRRQDFSLLEDGRARDFSGENAAKAGRLMRGSPPVLYVVSPRDVVLARVRDVDDQIELCLKRGDDAGFRDALAIANAFPASVRRHRLPDLVKAHLDALLDAGQAEAAAAACPQFLGASATLWEYWIFVFDRRGALARLAPRIPTAEPRLAPSVYDMVLERLLETDPPALLAAVKR 512
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: W7TUN1_9STRA (Vacuolar protein sorting-associated protein 41 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUN1_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.540e-33
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = 3 
Query:  363 PATFVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDLAAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR 779
            P   +  PEDL+VARVR ++D++ W L +G    A+ +AL  RHLL    F  L   +LE L+++G Y  AAAECPRLL  ++++WERWIY FA RRRL ++ PF+P + PRL  S YE+VL   L  + + FL T+++
Sbjct:  608 PVMLIAGPEDLLVARVRGVEDRILWVLQKGAMGAAIELALLNRHLLTHQRFHALATSYLEVLLAQGAYGRAAAECPRLLGEEASSWERWIYTFAARRRLASLAPFIPLESPRLSRSTYEMVLNHFLDCDREAFLSTIKK 746
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: A0A836CBT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.640e-31
Identity = 101/319 (31.66%), Postives = 130/319 (40.75%), Query Frame = 3 
Query:   18 PEVQLVKRQSGENTAQQRQKHWSPVVQSDGRVFCRHVLCS*GLDLATCFGSQYRIDHVISADTVPLRGWENAGAGQLLLRSTCWSISSY-----KPDREGATTVFHTPAEAEAIG-------VRGLPPATFVMSPE---------------------------------------------------------DLIVARVRDIDDK-------------VSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDL---------------AAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPFVP 683
            PEVQLV+R +GEN  ++   H   V Q +                         +  V++ADT+PL GW+N  AG   + ST WS  +      K  + GA +  H    A             GLPPA F+ +P+                                                         DL+VARVRD+DD              V+WAL RGD   AV +AL  RH LR H ++DLVA+ LE+LM  G Y++               AAAE P LL  D+ AWE+WIY FARR RL AI P VP
Sbjct:  494 PEVQLVRRATGENPGRRVVGHAELVHQLE------------------------ELRSVLAADTLPLNGWQNNLAGHYCMASTSWSPGAIRWPRGKAAQAGAASAMHINTAAAXXXXXXXXXTTAGLPPALFIAAPQSAPHQHLLRDFLRLPFSDPHRLSAPQARDAACAAPLPGVARAPPMRRARDADLVVARDLVVARVRDVDDSXXXXXXXXXXXXXVAWALQRGDAGAAVRVALRNRHSLRTHSYRDLVARRLEELMGEGRYEVXXXXXXXXXXXXXXXAAAETPLLLGSDAAAWEQWIYAFARRGRLDAIAPHVP 788
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: A0A5D6XHY4_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY4_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.150e-29
Identity = 70/198 (35.35%), Postives = 122/198 (61.62%), Query Frame = 3 
Query:  192 ISADTVPLRGWENAGAGQLLLRSTCWSISSYKPDREGATTVFHTPAEAEAIGVRGLPPATFVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDLAAAECPRLLDGDSTA--WERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR 779
            ++AD + LRG++        LR+  + + S +     ++++  +P+  +A    G    +++ +P+D++V R+R++DD+V+WAL R  +  A+A+AL  R  LR H  ++LV  +L +L++R ++  AAAE  RL  GD  A  WE+++Y FA+R +L AI P +PT  PRLP + YE+VL+  L ++P   LE +R+
Sbjct:  359 VAADILHLRGYQR-------LRAADYRMPSLQYASPPSSSLSPSPSIYDA----GYGRLSYICTPKDVVVCRLREVDDRVAWALSRKQYESALAVALADRKALRAHALEELVEYYLGELLARQQFKRAAAEIKRLFVGDDFAALWEKYVYVFAQRGQLGAIAPLLPTANPRLPRAQYEMVLKLFLDSDPGRLLELIRK 545
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: A0A7S3M1C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1C4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.030e-28
Identity = 75/199 (37.69%), Postives = 111/199 (55.78%), Query Frame = 3 
Query:  186 HVISADTVPLRGWENAGAGQLLLRSTCWSISSYKPDREGATTVFHTPAEAEAIGVRGLPPATFVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMS-RGEYDLAAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR 779
             ++SAD +PLRG    G    +L S+       K  R+ A+       +++  G RG  P  FV SP+D +VARVRD++D+V +AL + D   AV IA   R  L  +++ D++  +L  L+  R     AA+EC RL+  D   WE ++Y F   ++L AI   +PT +P L  SVYE VL  LLA  P++FLE ++R
Sbjct:  327 QIVSADQLPLRGCNFHGPEAYMLLSS----HQCKKHRQDASKWQLRAYQSQRGGARGYAPVFFVGSPQDFVVARVRDVNDRVGFALSQRDLKRAVDIARVDRTALTLYNYTDILRIYLTHLLEQRDAAATAASECFRLIGSDGAMWEEYVYKFIEYKQLEAIATLIPTDKPTLDSSVYEAVLTSLLADSPKVFLEIVKR 521
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: A0A7S1X7M8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X7M8_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 1.030e-26
Identity = 77/218 (35.32%), Postives = 120/218 (55.05%), Query Frame = 3 
Query:  141 GLDLATCFGSQYRI----DHVISADTVPLRGWENAGAGQLLLRSTCWSISSYKP------DREGATTVFHTPAEAEAIGVR-----GLPPATFVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAK-HLEDLMSRGEYDLAAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLAT 746
            G+D       + RI    +  I +D + L G+E+  A         +S++++ P      +  GA  +    A A+  GV      G  P  FV+SP+D++  R RD +D++SW L  G F  A  ++L +R    +   ++LVA+ +LE LMS  ++  AA  CPRLL G++ AWERW+Y FA+ R+LP + P +P +EPRL  + YE+VL  LLA+
Sbjct:   58 GVDNIEALRPELRIVSWDNREIVSDALSLHGFEHYTAND-------YSLAAFHPMKCRASENHGAA-IDQESAPAQEEGVTKWWRDGYEPFYFVVSPKDIVQGRPRDTEDRISWMLSHGRFEEA--LSLVERGESSELSTRELVAQAYLEHLMSCSKFAEAATLCPRLLQGNAAAWERWVYMFAQVRQLPTLAPHIPVEEPRLRTTAYEVVLSSLLAS 265
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: A0A2D4CDY7_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDY7_PYTIN)

HSP 1 Score: 116 bits (290), Expect = 9.600e-26
Identity = 68/197 (34.52%), Postives = 109/197 (55.33%), Query Frame = 3 
Query:  195 SADTVPLRGWENAGAGQLLLRSTCWSISSYKPDREGATTVFHTPAEAEAIGVRGLPPATFVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDLAAAECPRLLDGDSTA--WERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR 779
            SAD + L+G+    A            S YK      T    TP E  +I   G     ++ +P+D+++ R+RD+DD+V+WAL R  +  A+ +AL     LR+H  ++L+  HL +L+ + +Y  AA E  RL  G+  A  WE+++Y FA+R +L AI  ++PT  PRLP   YE+VL+  + ++P   LE +R+
Sbjct:  407 SADILNLKGYYKLRA------------SDYKMPSLQFTHANSTP-EGASIYDAGYGKLQYICAPKDVVICRLRDVDDRVAWALSRKQYEKALNVALSDTKSLRKHSMEELMEFHLSELLKKKQYKKAADEIRRLFVGEEYAALWEKYVYVFAQRGQLTAIAKYIPTTAPRLPTVQYEMVLKHFMDSDPGQLLEIIRK 590
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: K3WSM7_GLOUD (RING-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSM7_GLOUD)

HSP 1 Score: 115 bits (288), Expect = 1.750e-25
Identity = 63/198 (31.82%), Postives = 112/198 (56.57%), Query Frame = 3 
Query:  192 ISADTVPLRGWENAGAGQLLLRSTCWSISSYKPDREGATTVFHTPAEAEAIGVRGLPPATFVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDLAAAECPRLLDGDSTA--WERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR 779
            ++AD + L+G++   A    + +  ++ S++         +  T  +  +I   G    +++ +P+D+++ R+RD+DD+V WAL R  +  A+++AL     LR H   +L+  ++ +LM   ++  AA E  RL  GD  A  WE+++Y FA+R +L AI  F+PT  PRLP   YE+VL+  L ++P   LE +R+
Sbjct:  361 VAADILNLKGYQRLRASDYKMPTLQYTSSNH---------MLMTTHDDASIYDAGYGRLSYICTPKDVVICRLRDVDDRVQWALSRKQYEQALSVALRDPKSLRTHTMDELIEYYIGELMKNKQFKKAAEEIKRLFVGDEFAKLWEKYVYVFAQRGQLSAIAKFIPTANPRLPRVQYEMVLKLFLDSDPGQLLEIIRK 549
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BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Match: A0A7S1DIV9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DIV9_HEMAN)

HSP 1 Score: 114 bits (286), Expect = 2.010e-25
Identity = 52/126 (41.27%), Postives = 81/126 (64.29%), Query Frame = 3 
Query:  372 FVMSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLVAKHLEDLMSRGEYDLAAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPFVPTKEPRLPPSVYEIVLERLLATE 749
            F++SP+D++VA+ RD+DD +SW L R  F  AV  A +   LL++H  QD+  KH+E L+  GEYD AAA CPRLL  +++ W +W+  F + ++   IVP++P + P+LP   Y  +L   L ++
Sbjct:  118 FIVSPKDVVVAKSRDMDDHISWLLDRKRFGEAVKEAEQHPDLLKRHKLQDIGEKHIEQLLEEGEYDQAAALCPRLLKENASLWVKWVDAFTKAQQQHVIVPYIPLRNPQLPQDSYNTLLLHFLGSD 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17077.5030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS06_ECTSI4.290e-4466.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0XVF2_AURAN3.540e-3540.49Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7TUN1_9STRA3.540e-3346.04Vacuolar protein sorting-associated protein 41 n=2... [more]
A0A836CBT2_9STRA6.640e-3131.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5D6XHY4_9STRA6.150e-2935.35RING-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A7S3M1C4_9STRA1.030e-2837.69Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1X7M8_9CHLO1.030e-2635.32Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A2D4CDY7_PYTIN9.600e-2634.52Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
K3WSM7_GLOUD1.750e-2531.82RING-type domain-containing protein n=1 Tax=Globis... [more]
A0A7S1DIV9_HEMAN2.010e-2541.27Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17077contigEcto-sp13_S_contig17077:480..3534 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score125.9
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog44056.XP_009032253.1
Preferred nameVPS41
Model size782
KEGG koko:K20184
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005798,GO:0005829,GO:0005856,GO:0006403,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008017,GO:0008055,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010259,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016482,GO:0016485,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023057,GO:0030135,GO:0030136,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033060,GO:0033227,GO:0033263,GO:0033365,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042440,GO:0042441,GO:0042594,GO:0042802,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043621,GO:0043933,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044804,GO:0045055,GO:0045184,GO:0045324,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048066,GO:0048069,GO:0048193,GO:0048278,GO:0048284,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051604,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902500,GO:1902774
Exons6
EggNOG free text desc.regulation of SNARE complex assembly
EggNOG OGsKOG2066@1,KOG2066@2759
Cds size405
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17077.5030.1prot_Ecto-sp13_S_contig17077.5030.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17077 2202..3534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.8607512-UTR-Ecto-sp13_S_contig17077:479..5321681462893.8607512-UTR-Ecto-sp13_S_contig17077:479..532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17077 480..532 +
1681462893.8753693-UTR-Ecto-sp13_S_contig17077:935..10701681462893.8753693-UTR-Ecto-sp13_S_contig17077:935..1070Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17077 936..1070 +
1681462893.8930905-UTR-Ecto-sp13_S_contig17077:1497..16211681462893.8930905-UTR-Ecto-sp13_S_contig17077:1497..1621Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17077 1498..1621 +
1681462893.9018207-UTR-Ecto-sp13_S_contig17077:2136..22011681462893.9018207-UTR-Ecto-sp13_S_contig17077:2136..2201Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17077 2137..2201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.91128-CDS-Ecto-sp13_S_contig17077:2201..22521681462893.91128-CDS-Ecto-sp13_S_contig17077:2201..2252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17077 2202..2252 +
1681462893.9200325-CDS-Ecto-sp13_S_contig17077:2955..30451681462893.9200325-CDS-Ecto-sp13_S_contig17077:2955..3045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17077 2956..3045 +
1681462893.9284062-CDS-Ecto-sp13_S_contig17077:3270..35341681462893.9284062-CDS-Ecto-sp13_S_contig17077:3270..3534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17077 3271..3534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17077.5030.1

>prot_Ecto-sp13_S_contig17077.5030.1 ID=prot_Ecto-sp13_S_contig17077.5030.1|Name=mRNA_Ecto-sp13_S_contig17077.5030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MSPEDLIVARVRDIDDKVSWALGRGDFSGAVAIALEQRHLLRQHDFQDLV
AKHLEDLMSRGEYDLAAAECPRLLDGDSTAWERWIYGFARRRRLPAIVPF
VPTKEPRLPPSVYEIVLERLLATEPQLFLETMRR*
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mRNA from alignment at Ecto-sp13_S_contig17077:480..3534+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17077.5030.1 ID=mRNA_Ecto-sp13_S_contig17077.5030.1|Name=mRNA_Ecto-sp13_S_contig17077.5030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3055bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17077:480..3534+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGAAGGGCGTGTTCCAGCCGGAGGTGCAGCTGGTGAAGCGGCAGAGCGGC
GAGGTATGTTCAGCCGCGCACGATTTTAGTTGTGTGTTGTTGGATTGTTT
TTCTTCAGGGTTAAGCGTTGTTGGTCGTGCCCACACCCGAGCGAGAAATC
CAAAAGAAACAGGGCCCGGAACAGAGAGTGGTTGGTTATTGCACCGCCGT
CGTTTTACAGATACGCCGGCGCACTGCTGGTAAGTGCCCCCGCGTTCCGT
CTATTGCGTGTAGTGGCGCCTCTTGTGTCACTAGAACGGCATGGTTTTCC
TCCAGGCATCGCACCACATCTGATGAAAAGCAAGCACAGGAAACACGCAG
CTTCGTGTTCTTCGTCGCAAAAGACAGGGGCAGGGAAAAACAAAAAAGAA
AACATCCCGCCAACCCGAATATTATGTATTCCCTGCTGCCATCCTACGTA
CCACAGAACACCGCACAGCAGCGGCAAAAGCATTGGTCGCCCGTGGTCCA
ATCTGACGGCCGCGTGTTCTGCCGGCACGTGCTATGTAGTTGAGGACTGG
ACTTGGCGACTTGTTTTGGCTCACAATACCGGATAGATCATGTGGGTGGT
GTTTGACGCTTCGGAATGCTGAATGCTGCGCTACCGACACGCAGTTGTTT
ACACGGAAAGACAGCAAGCATGGCAACGGTTTGCGTTTTTTCGGCTGACG
CCGCGTGTTGGGGTCCTCGAGATGCACCGCGCGCCGCACGGTGTTGCTTT
ATTCCTGCGATTGGTATCGTTTATGTCTCTTGGTGTGTGCGCTTTTGGGC
TGTTTTGGTCTGAATTTTCGCTCTCTCTATCTTTCGCTCTCTCTATTTCT
GTCTCTCTCTCTTCCTCTATCCCTCTCTTTCTGTCTCTCTCTCCCTCTTT
TCTGTCCTCTCTCTATTCTGCCTTCCTCTCTTTCCGTCTCTCTCTAATTA
ATTATGTGTTGTCTGTGTATCTCTAACTCTCCCTCCCTCTCCCTCTCTGC
AAACATTCCGAATGACAGGTGATTTCGGCGGACACTGTCCCTCTTCGAGG
CTGGGAGAATGCAGGCGCGGGGCAGCTTCTCCTGCGATCCACGTGCTGGT
CGATTTCTTCCTACAAGCCGGACAGGGAGGGGGCCACCACCGGTGAGTCT
AGGCTTTTGAGTCTGGTCTGTCCTCTCTTCAAGCGTAACTACTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGTTGTCGCCTGAGGGCTGTCCCCGCCG
GGTAGTTTCGTCGCTGTCGTTGCTGCTGTTGCTCGCGCTGATGATGACGA
TCGCTGGGGGCTGGTGCTGACGCAGGTGTGGTGTTGGTGTTGGCCATGAT
GATTGCCGGGCGCTGGTGTCGTTATCGTTGTTGCTTTTGTAATAGGCCTG
CTGGCTGCCGTTGTAGTCCTATTAGTCGTGACGATCGCTGGGCGCTGTCG
CTGATGTTGCTACCGGTCTCTTGGGGCTGTCGATGTGGTGACCGCGTGGG
TTGTTATGGGCTAGAGAACGTTGCCTGGGTGATTACTGACGAGAGAACGT
TGTCTCCCTCCCTCTCATCGTTTGGCCAACCCAGAACACACGAAAGCAGT
TTAGAACTCTGTGTACCCCCCCCCCCCCTTCATCGCATTTGCACGAAACC
GAACCAGTTTTTCACACACCGGCTGAGGCGGAGGCGATCGGAGTGAGGGG
GTTGCCCCCGGCAACTTTCGTCATGTCCCCGGAAGACCTGATCGTGGCGA
GGGTCAGAGACATCGACGATAAGGTGATTCATTCGATAAATCGATCGAAT
AAAAGGAAGAGAGAGAAAGGGATTCTATCGCTCTGGTACAGAGTTACAGG
GAAAGGCGATCTGTTCGTCGATCGAAAAGAAAGAAAGAGAGAGGCGTCGT
AGGGAGAGAGGCGTTGTCTCGAGATCTATGAGTCAATCGAAAAGGGAGAG
AGGCGTTATCTCGAGACCTGTTTGTCGCTTCTAGTTGCGCCATCATTGGT
CCTGCTTACCACCCTCCGATCGGGCCCTGATAATAGTTCCATTTTTTTGT
GTGGTTTTGGTGGCTGTTGCTGGCCCCGTGTTCCTTGTTTCCTCGGTGTG
GGTGGCTCCCGTCAACAATGTTGTCTCGTCGTTCTACCGCCGCCCTTTCT
CCTTATCTTTTTGATGTCCTGGCCTTGTTTTTCGTGAATTCTTGTGAGAC
TGTTGCTGCCTTTGTGTGCTGGTACTCTACTCGTGTCTTCGGCGGCGCTA
TCTCTATCGTCCGTATCGACGGTTCCCTCCGGACGTGTCGGTTGTCGTCG
TCGTCGTGATGGTAATTTCGTTCTGAACCTTGGCCGCTGGCGCTTCAGCA
GCTGACTCGGTCCCACCGCTGCAGAAAACTCCTTTCGCCTCCCCTCATGT
GAGTGGCTGGCTTGCCATCCCGGTCCAACCTCGCAACCGTCACTGCTGTG
TTGCCTTCTTGCGTTTGTTTTTGAAGGTTTCGTGGGCCTTGGGGAGGGGA
GACTTCTCGGGGGCGGTTGCGATTGCCCTGGAACAGCGGCATCTCCTGCG
ACAGCACGACTTTCAGGTGAGGGGGGAGTGGGGTGGGGGGCCGCCGGCTG
GAGTGGCAAGGCGTGGGAGGGGATGGGATGGGGTGGGACGGGATAAGATA
ACATAGAATGATGTTGGATAGGATTGGATGAGATGGGACAGGGGATGGGA
TGATGTGATATGGGATGGGAGGGAATGGGTGGGGAGAGATGACGTGAACA
TTAAAACAACACTTCACATTTCCCACCCTCGCTACCAACAGGATCTCGTC
GCAAAGCACCTGGAGGACCTCATGTCGAGGGGCGAGTACGACCTGGCCGC
GGCCGAGTGCCCCCGCCTGCTCGACGGAGATTCCACGGCGTGGGAGCGTT
GGATCTATGGGTTTGCCCGCCGGAGGCGTTTGCCCGCCATCGTGCCGTTC
GTGCCCACCAAGGAGCCCCGGCTGCCGCCCTCGGTGTACGAGATCGTTCT
GGAGCGACTGCTTGCGACTGAGCCTCAGCTTTTCTTGGAGACAATGCGGA
GGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17077:480..3534+

>mRNA_Ecto-sp13_S_contig17077.5030.1 ID=mRNA_Ecto-sp13_S_contig17077.5030.1|Name=mRNA_Ecto-sp13_S_contig17077.5030.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17077:480..3534+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCCGGAAGACCTGATCGTGGCGAGGGTCAGAGACATCGACGATAA
GGTTTCGTGGGCCTTGGGGAGGGGAGACTTCTCGGGGGCGGTTGCGATTG
CCCTGGAACAGCGGCATCTCCTGCGACAGCACGACTTTCAGGATCTCGTC
GCAAAGCACCTGGAGGACCTCATGTCGAGGGGCGAGTACGACCTGGCCGC
GGCCGAGTGCCCCCGCCTGCTCGACGGAGATTCCACGGCGTGGGAGCGTT
GGATCTATGGGTTTGCCCGCCGGAGGCGTTTGCCCGCCATCGTGCCGTTC
GTGCCCACCAAGGAGCCCCGGCTGCCGCCCTCGGTGTACGAGATCGTTCT
GGAGCGACTGCTTGCGACTGAGCCTCAGCTTTTCTTGGAGACAATGCGGA
GGTGA
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