mRNA_Ecto-sp13_S_contig17055.5019.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17055.5019.1
Unique NamemRNA_Ecto-sp13_S_contig17055.5019.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17055.5019.1 vs. uniprot
Match: D8LJ14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ14_ECTSI)

HSP 1 Score: 307 bits (786), Expect = 1.200e-103
Identity = 150/163 (92.02%), Postives = 154/163 (94.48%), Query Frame = 3 
Query:   15 MTIYGIGGVSGTGKTHFRCSCEGFRDVRVLDIADVYEESLAQGHPDLHWRTALKVFQGRVQGWLEVDRSSDIVLEAFFRPDGAQRQAIEAIARDFGVDVIWGWAWAPRADCFSRVSNERGGHGSSERRQKRLSFIRTAESSLFRERPEESLAGLATRVPTSQT 503
            MTIYGIGGVSGTGKTHFR SCEGFRDVRVLDIADVYEESLAQGHPD+HWRTAL+VFQGRV+GWLE DRSSDIVLEAFFRPDGAQRQAIEAIAR FGVDVIWGWAWAPRADC SRVSNERGGH SSERRQKRLSFI+TAESS FRERPEESLA LATR PT QT
Sbjct:    1 MTIYGIGGVSGTGKTHFRTSCEGFRDVRVLDIADVYEESLAQGHPDMHWRTALQVFQGRVRGWLEEDRSSDIVLEAFFRPDGAQRQAIEAIARGFGVDVIWGWAWAPRADCLSRVSNERGGHDSSERRQKRLSFIKTAESSFFRERPEESLASLATRAPTRQT 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17055.5019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ14_ECTSI1.200e-10392.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17055contigEcto-sp13_S_contig17055:1846..3169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size804
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_002290.1
Cds size492
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.2449026-UTR-Ecto-sp13_S_contig17055:1845..21431681462893.2449026-UTR-Ecto-sp13_S_contig17055:1845..2143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17055 1846..2143 -
1681462893.2781281-UTR-Ecto-sp13_S_contig17055:3155..31691681462893.2781281-UTR-Ecto-sp13_S_contig17055:3155..3169Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17055 3156..3169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462893.2554438-CDS-Ecto-sp13_S_contig17055:2143..23361681462893.2554438-CDS-Ecto-sp13_S_contig17055:2143..2336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17055 2144..2336 -
1681462893.27021-CDS-Ecto-sp13_S_contig17055:2856..31551681462893.27021-CDS-Ecto-sp13_S_contig17055:2856..3155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17055 2857..3155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17055.5019.1prot_Ecto-sp13_S_contig17055.5019.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17055 2144..3155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17055.5019.1

>prot_Ecto-sp13_S_contig17055.5019.1 ID=prot_Ecto-sp13_S_contig17055.5019.1|Name=mRNA_Ecto-sp13_S_contig17055.5019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
MTIYGIGGVSGTGKTHFRCSCEGFRDVRVLDIADVYEESLAQGHPDLHWR
TALKVFQGRVQGWLEVDRSSDIVLEAFFRPDGAQRQAIEAIARDFGVDVI
WGWAWAPRADCFSRVSNERGGHGSSERRQKRLSFIRTAESSLFRERPEES
LAGLATRVPTSQT*
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mRNA from alignment at Ecto-sp13_S_contig17055:1846..3169-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17055.5019.1 ID=mRNA_Ecto-sp13_S_contig17055.5019.1|Name=mRNA_Ecto-sp13_S_contig17055.5019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17055:1846..3169- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGGAGGAGTCGATGACGATTTACGGGATCGGAGGCGTGTCTGGCACG
GGTAAAACCCACTTCCGCTGCAGCTGCGAGGGTTTCCGAGACGTCCGCGT
GTTGGACATTGCCGACGTGTACGAGGAGTCCTTGGCGCAGGGCCACCCAG
ACCTCCACTGGAGAACGGCGCTCAAGGTCTTTCAGGGGAGGGTCCAGGGA
TGGTTGGAGGTGGATCGATCGAGCGACATCGTGTTGGAAGCGTTTTTCAG
GCCTGATGGCGCACAGCGGCAGGCGATCGAGGCTATCGCCCGTGACTTCG
GGGTCGACGTAATGTGAGCGCGTTGTTTGCCATGGATTCGTGACCTTGTG
TATGCACGTGGCGTGCTTTTTTCACGTCATCTGAACCAACCACAACAACA
CCCATCGAATGTACGCAACTGGGGCTGACCACGCGCGCAGGCCTTTGTGG
TGGCGATGCTGTGTGCCGTTGCCATGGGGATTCGCTCTAGGAACCATTGT
GGTATCACCTACACTTCTGTTGCCTAAACCACGCTTGAGGTAGTGTACAC
GCGTGAATCCTCAAAACAAGCACTGACGCCTGTGCACGTGACGTTCTATC
TGACATTGCCGTAGCAGTGTTTATCGGGATATGTTTATTCGTTTCGGTTC
TTCCGTGTCGCGACCGGTGCTAAATTCGAACGTTTGGACCTTACAGTTGT
AGGACCGACTCTTGAAAACGACAACGTATGCGTGTGTCGAACGGCCGCCA
AGTCGCAATCTCGCTTTCCTTGTGAAGTTCATCCGTCGCAGTTGCTTTGT
TGCACTGCTGCTGCTGCTGTGTTTCCCGTGAAGATGGGGCTGGGCGTGGG
CGCCGCGGGCGGACTGCTTTTCCCGGGTATCGAACGAACGAGGCGGCCAC
GGTTCGTCGGAAAGAAGACAAAAGCGTCTCAGCTTTATCAGAACCGCAGA
GAGTTCGCTCTTCCGTGAGAGACCGGAAGAAAGCTTGGCGGGCCTCGCGA
CCAGAGTTCCGACTAGTCAAACGTAGACACGGACTTCGTTGGGTCGAAGT
AATTCGGTCTCTACATTTTGTAAGCTGATCGCAAGGAGACTTAGACTATG
CGTAGCGTTATTGCGGCTACTTCGGTGTCTTGGTAGCAGCACTGGGAAAA
GAGCTCCTGGTTGAGGATCCTTCACTTGGTCTACCTGCTACATTTGTGTG
GCTGTGCACCCCGTGCGTTGAGTATCACTTTCTTCGCGACTTTTTGCCGG
AGAAGGCCCAAACCCACCGGTGACGGAACAACTGGTGACGAGGACGTACT
CGGCATTTCGACAAATACTTCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17055:1846..3169-

>mRNA_Ecto-sp13_S_contig17055.5019.1 ID=mRNA_Ecto-sp13_S_contig17055.5019.1|Name=mRNA_Ecto-sp13_S_contig17055.5019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17055:1846..3169- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGATTTACGGGATCGGAGGCGTGTCTGGCACGGGTAAAACCCACTT
CCGCTGCAGCTGCGAGGGTTTCCGAGACGTCCGCGTGTTGGACATTGCCG
ACGTGTACGAGGAGTCCTTGGCGCAGGGCCACCCAGACCTCCACTGGAGA
ACGGCGCTCAAGGTCTTTCAGGGGAGGGTCCAGGGATGGTTGGAGGTGGA
TCGATCGAGCGACATCGTGTTGGAAGCGTTTTTCAGGCCTGATGGCGCAC
AGCGGCAGGCGATCGAGGCTATCGCCCGTGACTTCGGGGTCGACGTAATA
TGGGGCTGGGCGTGGGCGCCGCGGGCGGACTGCTTTTCCCGGGTATCGAA
CGAACGAGGCGGCCACGGTTCGTCGGAAAGAAGACAAAAGCGTCTCAGCT
TTATCAGAACCGCAGAGAGTTCGCTCTTCCGTGAGAGACCGGAAGAAAGC
TTGGCGGGCCTCGCGACCAGAGTTCCGACTAGTCAAACGTAG
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