mRNA_Ecto-sp13_S_contig17048.5018.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig17048.5018.1
Unique Name	mRNA_Ecto-sp13_S_contig17048.5018.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: A0A6H5L6E6_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E6_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.310e-49
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 1

Query:    1 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCKA 270
            KVWGGEHIHVGLYSKLNAEEAKLPVLDRI+KASILNAEELLARCFPAS NGT+GTNGNGA PTS+STMVDMGSGYGGSARLAAKTLGCKA
Sbjct:  143 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIEKASILNAEELLARCFPASANGTNGTNGNGAPPTSESTMVDMGSGYGGSARLAAKTLGCKA 232

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: A0A6H5L7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A2_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 3.910e-48
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1

Query:    1 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCKA 270
            KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPAS NGT+GTNGNGA PTS+STMVDMGSGYGGSARLAAKTLGCKA
Sbjct:  200 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTNGTNGNGAPPTSESTMVDMGSGYGGSARLAAKTLGCKA 289

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: D7G7W9_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7W9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.020e-47
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 1

Query:    1 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCK 267
            KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPAS NGT GTNGNGA  TS+STMVDMGSGYGGSARLAAKTLGCK
Sbjct:  313 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTSGTNGNGAPHTSESTMVDMGSGYGGSARLAAKTLGCK 401

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: D7G5Z7_ECTSI (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Z7_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 5.190e-46
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 1

Query:    1 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCK 267
            KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPAS NGT+GTNGNGA  TS+STMVDMGSGYGGSARLAAKTLGCK
Sbjct:   38 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASANGTNGTNGNGAPHTSESTMVDMGSGYGGSARLAAKTLGCK 126

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: A0A6H5L8N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8N6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.360e-30
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 1

Query:    4 VWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCK 267
            VWGGEH+HVGL+SKL  E AKL  L+RI+KAS L+ +ELL+RCFP+      GTNGNGA P+++ TMVD+G GYGG+AR+A K LGCK
Sbjct:    5 VWGGEHLHVGLHSKLEGEHAKLEGLERIRKASSLSTDELLSRCFPS------GTNGNGAPPSAECTMVDLGCGYGGTARVATKKLGCK 86

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: A0A6H5KC33_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC33_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.510e-27
Identity = 60/90 (66.67%), Postives = 71/90 (78.89%), Query Frame = 1

Query:    1 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCKA 270
            +VWGGEHIHVGLY+KL  E+AKL  ++RI KAS L  EELL+RCFPA G  T   +G GA P +  TMVDMGSGYGG+AR+AA+TLGCKA
Sbjct:  340 QVWGGEHIHVGLYNKLEGEDAKLEGVERITKASSLGTEELLSRCFPA-GATTASNSGEGALPATGCTMVDMGSGYGGTARVAAQTLGCKA 428

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: A0A835YZA4_9STRA (Putative sarcosine-dimethylglycine methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA4_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 4.440e-9
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1

Query:    1 KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGC 264
            +VWGG  IHVGLY      ++  P ++RIK AS L+A+ L A   P                 S S ++DMGS YGG+ARL AKT GC
Sbjct:   32 QVWGGSFIHVGLYDDPQVTDSMDP-MERIKLASELSAKRLFATAEPLD---------------SSSKVMDMGSAYGGNARLCAKTYGC 103

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BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Match: A0A4R4T6F0_9ACTN (Methyltransferase domain-containing protein n=7 Tax=Actinomadura TaxID=1988 RepID=A0A4R4T6F0_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 2.720e-5
Identity = 35/88 (39.77%), Postives = 43/88 (48.86%), Query Frame = 1

Query:    4 VWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGNGTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCK 267
            VWGG+HIHVG+Y     E+      D I  AS    E + A                G   T  S +VD+GSGYGGSAR  A+T GC+
Sbjct:  323 VWGGQHIHVGIY-----EDG-----DTIDAASARTVERMAA----------------GLELTPYSHVVDLGSGYGGSARYLARTYGCR 384

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig17048.5018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8


Match Name	E-value	Identity	Description
A0A6H5L6E6_9PHAE	7.310e-49	94.44	Methyltransf_11 domain-containing protein n=1 Tax=...	[more]
A0A6H5L7A2_9PHAE	3.910e-48	95.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7W9_ECTSI	4.020e-47	94.38	Putative sarcosine-dimethylglycine methyltransfera...	[more]
D7G5Z7_ECTSI	5.190e-46	94.38	Putative sarcosine-dimethylglycine methyltransfera...	[more]
A0A6H5L8N6_9PHAE	3.360e-30	63.64	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KC33_9PHAE	1.510e-27	66.67	Methyltransf_11 domain-containing protein n=2 Tax=...	[more]
A0A835YZA4_9STRA	4.440e-9	43.18	Putative sarcosine-dimethylglycine methyltransfera...	[more]
A0A4R4T6F0_9ACTN	2.720e-5	39.77	Methyltransferase domain-containing protein n=7 Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig17048	contig	Ecto-sp13_S_contig17048:3027..3297 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	165.2
Seed ortholog evalue	1.4e-38
Seed eggNOG ortholog	2880.D7G5Z7
Model size	271
Hectar predicted targeting category	other localisation
Exons	1
EggNOG free text desc.	Methyltransferase domain
EggNOG OGs	2E18F@1,2S8KF@2759
Ec32 ortholog description	Methyltransferase type 11
Ec32 ortholog	Ec-00_009500.10
Cds size	270
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462893.211808-CDS-Ecto-sp13_S_contig17048:3027..3297	1681462893.211808-CDS-Ecto-sp13_S_contig17048:3027..3297	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig17048 3028..3297 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig17048.5018.1	prot_Ecto-sp13_S_contig17048.5018.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig17048 3028..3297 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig17048:3027..3297-
coding sequence from alignment at Ecto-sp13_S_contig17048:3027..3297-

protein sequence of mRNA_Ecto-sp13_S_contig17048.5018.1

>prot_Ecto-sp13_S_contig17048.5018.1 ID=prot_Ecto-sp13_S_contig17048.5018.1|Name=mRNA_Ecto-sp13_S_contig17048.5018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
KVWGGEHIHVGLYSKLNAEEAKLPVLDRIKKASILNAEELLARCFPASGN
GTDGTNGNGASPTSKSTMVDMGSGYGGSARLAAKTLGCKA

mRNA from alignment at Ecto-sp13_S_contig17048:3027..3297-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig17048.5018.1 ID=mRNA_Ecto-sp13_S_contig17048.5018.1|Name=mRNA_Ecto-sp13_S_contig17048.5018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=271bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17048:3027..3297- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGTGGGGTGGAGAGCACATCCACGTCGGCCTGTACAGCAAGCTCAA
CGCGGAAGAAGCCAAGCTGCCCGTGCTGGACCGCATCAAGAAGGCCAGCA
TCCTGAACGCCGAGGAGCTGCTCGCCCGTTGCTTCCCCGCCAGCGGTAAC
GGGACGGACGGCACTAACGGCAACGGCGCGTCTCCCACATCGAAGAGCAC
CATGGTGGACATGGGCTCCGGATACGGGGGCTCGGCCAGGCTTGCAGCCA
AGACGCTCGGCTGCAAGGCGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17048:3027..3297-

>mRNA_Ecto-sp13_S_contig17048.5018.1 ID=mRNA_Ecto-sp13_S_contig17048.5018.1|Name=mRNA_Ecto-sp13_S_contig17048.5018.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17048:3027..3297- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTGTGGGGTGGAGAGCACATCCACGTCGGCCTGTACAGCAAGCTCAA
CGCGGAAGAAGCCAAGCTGCCCGTGCTGGACCGCATCAAGAAGGCCAGCA
TCCTGAACGCCGAGGAGCTGCTCGCCCGTTGCTTCCCCGCCAGCGGTAAC
GGGACGGACGGCACTAACGGCAACGGCGCGTCTCCCACATCGAAGAGCAC
CATGGTGGACATGGGCTCCGGATACGGGGGCTCGGCCAGGCTTGCAGCCA
AGACGCTCGGCTGCAAGGCG