mRNA_Ecto-sp13_S_contig17.4979.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17.4979.1
Unique NamemRNA_Ecto-sp13_S_contig17.4979.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17.4979.1 vs. uniprot
Match: D7G6V0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V0_ECTSI)

HSP 1 Score: 458 bits (1178), Expect = 4.080e-154
Identity = 259/287 (90.24%), Postives = 262/287 (91.29%), Query Frame = 2 
Query:    2 QDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVPYQPRRERARMAVHADPNNSNASAEA--NPAAVRVGELFQVDEDEDEEDGHEGGVLPWDPLAPRLLQEARRLAEEGKERPFTAAVVLAAALPFSXXXXXXXXXXXXXXXXXQWGAATPMGRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACRVGEGALWTARHPVEAAMATVAMAADAASAAYEQAVWVGDLLATVGEEVFSGPAELEDGC 856
            QDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVP+QPRRERARMAVHADPNN         NPAA RVGELFQVDE     DGHEGG LPWDPLAPRLLQEARRLAEEGKERPFTAAVVLAAALPFS XXXXXXXXXXXXX   QWGAATP+GRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACR GEGALWTARHPVEAAMATV MAADAASAAYEQAVW+GDLLATV EEVFS PAE EDGC
Sbjct:  163 QDIVSALGWVRTMISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVPFQPRRERARMAVHADPNNXXXXXXXXXNPAAARVGELFQVDEXXXXXDGHEGGGLPWDPLAPRLLQEARRLAEEGKERPFTAAVVLAAALPFSGXXXXXXXXXXXXXAALQWGAATPVGRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQELDRAGGVTGLACRAGEGALWTARHPVEAAMATVGMAADAASAAYEQAVWMGDLLATVREEVFSRPAEPEDGC 449
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17.4979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V0_ECTSI4.080e-15490.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17contigEcto-sp13_S_contig17:183..3009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score433.7
Seed ortholog evalue6.3e-119
Seed eggNOG ortholog2880.D7G6V0
Model size1704
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2EWU7@1,2SYK9@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_012150.1
Cds size825
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462889.3168235-UTR-Ecto-sp13_S_contig17:182..2191681462889.3168235-UTR-Ecto-sp13_S_contig17:182..219Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17 183..219 +
1681462889.358337-UTR-Ecto-sp13_S_contig17:2167..30091681462889.358337-UTR-Ecto-sp13_S_contig17:2167..3009Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17 2168..3009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462889.331365-CDS-Ecto-sp13_S_contig17:219..2851681462889.331365-CDS-Ecto-sp13_S_contig17:219..285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17 220..285 +
1681462889.3421361-CDS-Ecto-sp13_S_contig17:850..13181681462889.3421361-CDS-Ecto-sp13_S_contig17:850..1318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17 851..1318 +
1681462889.3502905-CDS-Ecto-sp13_S_contig17:1876..21671681462889.3502905-CDS-Ecto-sp13_S_contig17:1876..2167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17 1877..2167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17.4979.1prot_Ecto-sp13_S_contig17.4979.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17 220..2167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17.4979.1

>prot_Ecto-sp13_S_contig17.4979.1 ID=prot_Ecto-sp13_S_contig17.4979.1|Name=mRNA_Ecto-sp13_S_contig17.4979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
MISDVQNVLLEFDDSDLEELAQMTLISLRILVGYAKSTHRSLAQLCRVPY
QPRRERARMAVHADPNNSNASAEANPAAVRVGELFQVDEDEDEEDGHEGG
VLPWDPLAPRLLQEARRLAEEGKERPFTAAVVLAAALPFSGAAVFLGAPV
LAGDAALQWGAATPMGRTVGHGTKNAVELGKLGWVASKLATKQTLRLASQ
ELDRAGGVTGLACRVGEGALWTARHPVEAAMATVAMAADAASAAYEQAVW
VGDLLATVGEEVFSGPAELEDGCG*
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mRNA from alignment at Ecto-sp13_S_contig17:183..3009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17.4979.1 ID=mRNA_Ecto-sp13_S_contig17.4979.1|Name=mRNA_Ecto-sp13_S_contig17.4979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17:183..3009+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGATATCGTGAGCGCTCTTGGCTGGGTGCGAACAATGATATCTGATG
TGCAGAACGTGCTGCTGGAGTTTGATGACAGCGATTTGGAGGAGCTAGCT
CAGGTAGGGAGGAGGGGTTCAGCTTTTCGGTGTCGTCGCCCCACGGAGTA
GGCTGCGTGCACGGGCGGTGCTTGCCGTTTGATGATCGGCCAATGTTAAA
CGGTTCAACCTGTGGTACTTCGTACACACCGTGTGTACCTTGAAGGCGAC
ATCACGGAGGTTATGTTCTCAATTGCTGTGCAGCATGTGACTGGTAGCTT
GGCAGGCGAACGTTTGGTGCGGTTTTTGGAAAATGATGGGTCGAAGCGAG
CTCTTCCAACATGAATAACAGGTCAGGTGTCTTGTCAGTACCTTCTTTTA
ACGTGCTTGCTGGTCCAACTGACGCGGACACCTTCCGTGGTCACCGGCTG
CCTAAAGTACTCGACATCTTGTCACGAACGCGACAGACGCGAACGAACGA
ACCAGGAAAATATGGCGCGGTTCAACTTGGACGTTAAGTCTCGCCCTACT
TCAAGATGCGTCTGCTGCCTCTAGTGGCCATCGCAGAACACGTCTCAGTT
GACCGACTGGCTGATTGTCCCCGTTTCCCTCGGCGGATCTCCTGCCCCCC
TCAACCCTCAACTGCCAGATGACCCTCATCTCTCTCCGAATACTGGTCGG
CTACGCCAAGAGCACCCACAGGAGCCTAGCCCAGCTGTGCCGCGTGCCCT
ATCAACCACGCCGAGAGCGCGCAAGAATGGCAGTTCACGCCGACCCTAAC
AACAGCAACGCCTCCGCCGAAGCAAACCCCGCGGCGGTACGTGTCGGTGA
GCTGTTCCAGGTAGACGAGGACGAGGACGAGGAAGACGGCCATGAGGGGG
GGGTCTTGCCTTGGGACCCCCTCGCCCCCAGGCTGTTGCAGGAGGCCCGG
CGGTTGGCGGAGGAAGGGAAAGAGCGACCCTTCACGGCGGCGGTGGTTTT
GGCGGCCGCGTTGCCGTTCTCCGGGGCGGCCGTTTTCTTGGGGGCGCCGG
TGTTGGCCGGAGACGCGGCGCTGCAGTGGGGTGCTGCCACGCCCATGGGG
AGGACGGTGGGGCACGGGACGAAGAATGCTGTAGAGGTGAGTGAGTGAGT
GAGTGGGCACGATGGGTGAAGCGCCTGGGCGGCGAAGAGTAGGGCGGGTG
TTGGTAAGTGCACTAGCACGGTTCTCACGGCGAGTTTGAAGAATAAAGGT
AACGTGTACGTAGCCGGGGCTGGGGTTAGCCGGGAGGAGGTTGTCCTGTC
CTGTCCTGTTATGGCACGGAAGGTGTCTGGTGTAGAGGGTTGTGTGCTGC
AGTGCTATGCGCACTTGAGGTAGGCAGGCCATGGCCTCGAAGAACACACG
GTACAGCAATAGGTCGATCGATCGATGGATTACATGCTGTGCTTACGGCG
GAACGAATCAAAGCTGTTTACAAGTAGCTCGCATGCCTGCTGGCTTGTGG
CCGGCACGGTTTTCGGCGGACCACGTTTCTTTCTTCCGACAACAGTATAG
GCGCGACGCTCGCAGCTGTTCCAATTGCCCCTTACATTCACGTCATGTGC
GTGTCGTTCGCTGGGCTGCCCCCACTGCCGCTATAACATGCCGTTGTCTT
TTCGTGATGCACCGTGACTGCACTTCGATCCCCCTAACGTCCAGCTCGGC
AAGCTCGGCTGGGTAGCGAGCAAGTTAGCCACAAAGCAGACGCTGAGACT
GGCGAGCCAGGAGCTGGACCGAGCGGGCGGGGTGACGGGGCTGGCTTGTC
GGGTAGGAGAGGGCGCTCTTTGGACGGCGAGACATCCGGTAGAGGCCGCC
ATGGCTACGGTAGCCATGGCCGCTGACGCGGCAAGCGCGGCGTACGAACA
AGCGGTGTGGGTGGGCGATTTGCTCGCAACCGTCGGGGAGGAAGTGTTCT
CTGGACCCGCCGAACTTGAAGACGGTTGTGGATAAGGAAGGACGTGATGT
TTCTGTTGTTCTGAGTGTTTTGTTAGTCGGTGTACAGTTGTGGTAGGTTG
GACCGATTGGAGCCGAAATGTGGCATGGCACGTAGCCGTGGCTTGTCCCA
CCACCTGTAGTTTGTGCTCGGTCGGGCCTGATAAGCCTGGTCATGTAATT
AGTATTTTCTGTGGGACTTGGCGTGCGTTCGCACCACGGTTTCCCAGCGA
TGTACATACATACCGTCGTTTGTGAGAATGGACGGACCTTCGTCCCGCCG
CCTCGGAGCTAACACCGGTGAGACGCACGGCCTTGTCCATCTGATAGGTG
TCGTTACGACGGAAGGTCCAGTCGCGGGAGGCGAGGCACAGCAATAGATA
GGTAGCCTTTCCCTGTGTCCATGTGTTCTGCAAATTGTGTATTGTGTTTA
ATGGTGTTGGTGACGTCTTCAAAACTCTGTTGGTCGGTGATATCTCTAGC
TACAGTAGGTTTTGTTTTCGATGGCCCTGGGTGAGTTGCGGCACGCAACG
TCGGGCATTTGGTTGCCATATTGCCGGAGTACATACCAAGGCGTGCTGTT
GACGCAGCTACACTAATTTGTTGGGCGTTCGGGTGCAACGGCATGCTCCA
AAAATGCGGCAGAGCACGGGTGTCCCACGTGTAACAAACAAACCGAGTGG
TGGTGTGGTGGGGGTGCGACAATACAGAGCAAATAATGGTCTGACTCTGG
TAAATAGCGTACTTCCAGGAAGGAGCCTCCTTCCCGCCACAGAGGCACTC
GCTCGCCGCAATAACATGTGTACATTCGGGCTTCAAACAACAACGATTTC
CCCCCGTGAAACGTGAACGACACTTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17:183..3009+

>mRNA_Ecto-sp13_S_contig17.4979.1 ID=mRNA_Ecto-sp13_S_contig17.4979.1|Name=mRNA_Ecto-sp13_S_contig17.4979.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17:183..3009+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATATCTGATGTGCAGAACGTGCTGCTGGAGTTTGATGACAGCGATTT
GGAGGAGCTAGCTCAGATGACCCTCATCTCTCTCCGAATACTGGTCGGCT
ACGCCAAGAGCACCCACAGGAGCCTAGCCCAGCTGTGCCGCGTGCCCTAT
CAACCACGCCGAGAGCGCGCAAGAATGGCAGTTCACGCCGACCCTAACAA
CAGCAACGCCTCCGCCGAAGCAAACCCCGCGGCGGTACGTGTCGGTGAGC
TGTTCCAGGTAGACGAGGACGAGGACGAGGAAGACGGCCATGAGGGGGGG
GTCTTGCCTTGGGACCCCCTCGCCCCCAGGCTGTTGCAGGAGGCCCGGCG
GTTGGCGGAGGAAGGGAAAGAGCGACCCTTCACGGCGGCGGTGGTTTTGG
CGGCCGCGTTGCCGTTCTCCGGGGCGGCCGTTTTCTTGGGGGCGCCGGTG
TTGGCCGGAGACGCGGCGCTGCAGTGGGGTGCTGCCACGCCCATGGGGAG
GACGGTGGGGCACGGGACGAAGAATGCTGTAGAGCTCGGCAAGCTCGGCT
GGGTAGCGAGCAAGTTAGCCACAAAGCAGACGCTGAGACTGGCGAGCCAG
GAGCTGGACCGAGCGGGCGGGGTGACGGGGCTGGCTTGTCGGGTAGGAGA
GGGCGCTCTTTGGACGGCGAGACATCCGGTAGAGGCCGCCATGGCTACGG
TAGCCATGGCCGCTGACGCGGCAAGCGCGGCGTACGAACAAGCGGTGTGG
GTGGGCGATTTGCTCGCAACCGTCGGGGAGGAAGTGTTCTCTGGACCCGC
CGAACTTGAAGACGGTTGTGGATAA
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