mRNA_Ecto-sp13_S_contig16985.4972.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16985.4972.1
Unique NamemRNA_Ecto-sp13_S_contig16985.4972.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Match: D7G8B8_ECTSI (Fungal zinc cluster transcription factor, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B8_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 4.400e-105
Identity = 165/187 (88.24%), Postives = 172/187 (91.98%), Query Frame = 1 
Query:    1 MATDRTKIKGVRAPLSKRPSSSRKNCDRCFQKKTKCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGVSSVTQGGRLRRTVEEPMRAASERARSLTLQTSGHEAETTGAAYALDASEGLASRWTTAYWRLAVDANKSNSDAAQTSVAGVEANNGNRQKELRAEMHAIGDKLTVRW 561
            MATDRTKI+GVR PLSK PSS RK+CDRCFQKKTKCSAPFGKDSPCRSCRKNG DCVFSDRQKTGPKAKGAKGVSSSPGVSS TQG R+ RTVEEPMRAAS RARS T +TSGHEAETT AA ALDASEGLASRWTTAYWR AVDAN SNSDAAQTSVAGV+ANNGNRQKELRA+MHAIGD+LTV W
Sbjct:    1 MATDRTKIQGVRTPLSKHPSS-RKSCDRCFQKKTKCSAPFGKDSPCRSCRKNGADCVFSDRQKTGPKAKGAKGVSSSPGVSSATQGARVGRTVEEPMRAASGRARSSTTETSGHEAETTTAACALDASEGLASRWTTAYWRFAVDANNSNSDAAQTSVAGVKANNGNRQKELRADMHAIGDRLTVSW 186
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BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Match: D7G8B0_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B0_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.090e-58
Identity = 104/153 (67.97%), Postives = 119/153 (77.78%), Query Frame = 1 
Query:  103 KCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGVSSVTQGGRLRRTVEEPMRAASERARSLTLQTSGHEAETTGAAYALDASEGLASRWTTAYWRLAVDANKSNSDAAQTSVAGVEANNGNRQKELRAEMHAIGDKLTVRW 561
            +CSAPFGKD PC+SCRKNG+DCVFSDRQK+GPKA GAKGV SSP V SVT+G R+ RT+EEP R  + RA + TL TS ++AE   +A  LDASE LASRWTTAYW LA D   S  DA QTSV G +ANN +RQKELR +MH IGDKLTVRW
Sbjct:   21 RCSAPFGKDMPCQSCRKNGLDCVFSDRQKSGPKATGAKGVPSSPRVRSVTRGRRVDRTIEEPTRPGTGRASTWTLLTSLYKAENATSASTLDASEDLASRWTTAYWTLA-DHKDSTFDAEQTSVTGAKANNSSRQKELRTDMHVIGDKLTVRW 172
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BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Match: A0A6H5KYB0_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB0_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.200e-58
Identity = 106/152 (69.74%), Postives = 120/152 (78.95%), Query Frame = 1 
Query:  103 KCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGVSSVTQGGRLRRTVEEPMRAASERARSLTLQTSGHEAETTGAAYALDASEGLASRWTTAYWRLAVDANKSNSDAAQTSVAGVEANNGNRQKELRAEMHAIGDKLTVR 558
            +CSAPFGKD PC+SCRKNG+DCVFSDRQK+GPKA GA GV SSPGV SVTQG    RT+EEP RAAS RA + TL TS + AE   +A  LDASE LASRWTTAYW LA D + S  DA QT+VAG  A+NG+RQKELRA+MH IGD+LTVR
Sbjct:   42 RCSAPFGKDIPCQSCRKNGLDCVFSDRQKSGPKATGATGVPSSPGVRSVTQGRGADRTIEEPTRAASGRASTWTLLTSLYTAENARSASTLDASEDLASRWTTAYWALA-DLDASTFDAEQTTVAGARADNGSRQKELRADMHVIGDRLTVR 192
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BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Match: A0A6H5JIB6_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB6_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.580e-43
Identity = 95/153 (62.09%), Postives = 101/153 (66.01%), Query Frame = 1 
Query:  103 KCSAPFGKDSPCRSCRKNGVDCVFSDRQKTGPKAKGAKGVSSSPGVSSVTQGGRLRRTVEEPMRAASERARSLTLQTSGHEAETTGAAYALDASEGLASRWTTAYWRLAVDANKSNSDAAQTSVAGVEANNGNRQKELRAEMHAIGDKLTVRW 561
            KCSAPFGKD+PCRSCRKNGVDCVFSDRQ  GPKAKGA GV S PG  SVTQGG   RTV+E  RAAS RAR  +  T              +    L +R      RLAVDAN S  DAAQTSVAG  ANN +RQKELR EMHAIGD L  RW
Sbjct:   37 KCSAPFGKDNPCRSCRKNGVDCVFSDRQNPGPKAKGATGVPSLPGEISVTQGGSAGRTVKESARAASGRARPASRLTRSCRXXXXXXXXXTNC---LPTR------RLAVDANSS--DAAQTSVAGATANNSDRQKELRVEMHAIGDSLNARW 178
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BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Match: A0A6H5JUP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP2_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.370e-30
Identity = 62/75 (82.67%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  334 SGHEAETTGAAYALDASEGLASRWTTAYWRLAVDANKSNSDAAQTSVAGVEANNGNRQKELRAEMHAIGDKLTVR 558
            SGHEAETTGA   LDASEGLASRWTTAYWRLA D N  NSDAAQTSVAG  ANNGNR+KELRA+MH IGD+LTVR
Sbjct:   30 SGHEAETTGAISVLDASEGLASRWTTAYWRLATDTN--NSDAAQTSVAGATANNGNREKELRADMHVIGDRLTVR 102
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BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Match: D7G8B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B7_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 3.140e-8
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 1 
Query:  466 TSVAGVEANNGNRQKELRAEMHAIGDKLTVRW 561
            TSVAGV+ANNGNRQKELRA+MHAIGD+LTV W
Sbjct:   42 TSVAGVKANNGNRQKELRADMHAIGDRLTVSW 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16985.4972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G8B8_ECTSI4.400e-10588.24Fungal zinc cluster transcription factor, putative... [more]
D7G8B0_ECTSI1.090e-5867.97Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5KYB0_9PHAE3.200e-5869.74Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JIB6_9PHAE2.580e-4362.09Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JUP2_9PHAE1.370e-3082.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8B7_ECTSI3.140e-887.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16985contigEcto-sp13_S_contig16985:1848..3628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size561
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-19_003890.1
Cds size561
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.8900146-CDS-Ecto-sp13_S_contig16985:1847..19891681462888.8900146-CDS-Ecto-sp13_S_contig16985:1847..1989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16985 1848..1989 -
1681462888.8994064-CDS-Ecto-sp13_S_contig16985:2234..23201681462888.8994064-CDS-Ecto-sp13_S_contig16985:2234..2320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16985 2235..2320 -
1681462888.9080544-CDS-Ecto-sp13_S_contig16985:2584..28181681462888.9080544-CDS-Ecto-sp13_S_contig16985:2584..2818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16985 2585..2818 -
1681462888.916812-CDS-Ecto-sp13_S_contig16985:3529..36281681462888.916812-CDS-Ecto-sp13_S_contig16985:3529..3628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16985 3530..3628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16985.4972.1prot_Ecto-sp13_S_contig16985.4972.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16985 1848..3628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16985.4972.1

>prot_Ecto-sp13_S_contig16985.4972.1 ID=prot_Ecto-sp13_S_contig16985.4972.1|Name=mRNA_Ecto-sp13_S_contig16985.4972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MATDRTKIKGVRAPLSKRPSSSRKNCDRCFQKKTKCSAPFGKDSPCRSCR
KNGVDCVFSDRQKTGPKAKGAKGVSSSPGVSSVTQGGRLRRTVEEPMRAA
SERARSLTLQTSGHEAETTGAAYALDASEGLASRWTTAYWRLAVDANKSN
SDAAQTSVAGVEANNGNRQKELRAEMHAIGDKLTVRW
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mRNA from alignment at Ecto-sp13_S_contig16985:1848..3628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16985.4972.1 ID=mRNA_Ecto-sp13_S_contig16985.4972.1|Name=mRNA_Ecto-sp13_S_contig16985.4972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1781bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16985:1848..3628- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACTGACCGAACCAAAATTAAAGGGGTCCGGGCGCCCTTGTCCAA
ACGCCCCTCCTCGAGCCGGAAGAACTGTGACCGATGTTTCCAGAAGAAGG
TCAGTGAGTGGAGAGGATCAGTAGATAGGGACAGACGGCTCACTTTGTAC
TCGTGCGGCCATGACACATATCCTCTGATAGTGATTGCTGGACCTAGTCC
AGAGAGTAGTTCCGACAGAGAACGGCGCGGCACGTCCTTTACCAATACCA
TAATTTTCAGCCAGTGCGTTTTCTCGCCTGGAGGATCTTCAGCTTGTCGT
GACATATTGAGCGCTCGGTTCCAGTATGATGTCCTGTGACTCCGTGTCTA
CAAACGGCAGCGATGAGGCCGCTATTGCTGTTATTACAGTGCTCTCTTCG
CGTTGTAGACTCCGATGCATGACGTCCTCATTTCAAACGAATGCGTAATT
TTCGGTACCACAAACCCCAAACCACCTCACATGATGAACATCTATCCCAA
CGGAGAGAACCAGCAAGCGGTCTGACAGTATGCGTTTCCCTGCACGTGAG
GAAAGAAATAAAATCTAAGTCAACCAGACGAAAGAAAGATGTAGGCGATC
GTGCCAGGGCCTGCTGAAACGTCCCTAGTGTTTGCCTGCTGGGGCACGAA
GGATTGCAGAATAGTCAGGTGTGGCAGCCCGCCTGATCCGTACTGGAAAA
TGGCCTCCCTGAACAGCAGTAGTGTAAATCAGCATTCTTAGGCCCACCTT
GACACGGCGTTGGCTTGTATCAGTGACCCAAGTGTTTGTGTCGTGTTGTT
GCCGCTACAGACAAAATGCTCTGCGCCGTTCGGTAAGGACAGCCCGTGCC
GGTCGTGCCGAAAGAATGGGGTTGATTGCGTCTTCTCTGACCGGCAGAAG
ACGGGGCCAAAGGCAAAAGGGGCCAAAGGAGTGTCAAGCTCACCGGGAGT
AAGTTCCGTCACCCAGGGCGGAAGGTTGCGCAGGACCGTCGAAGAACCTA
TGAGAGCTGCGTCGGAGAGGGCACGGTCATTGACCCTTCAGACGGTACGA
GATCTAGCATAGTCTACACAGTAAGCTTCTAGGTCCGTTTGCATACTGTT
GCTGTGTCACCGTATGTTGTAGGATCTGTATAACTACACTCTGTTTTTCA
GGCCACAGGCAGCATGAAGTCGCCCAAGGAAACCAAATCCGCCAGAAGGT
ATTCAGTAGTTTGAGTTGTGTACCTTTTTGTACCAAGGACGGCCTTCAGT
AGGCTGAGGAAAACTTCTTCACCCACCCCCTCAACCCTGCTGACTTTTGA
CCACCCAGTCGGGTCATGAAGCCGAGACGACTGGAGCGGCATACGCTCTC
GATGCGAGCGAAGGTCTTGCATCGCGGTGGACCACGGCATACTGGTGAGG
AATGGGGGTGTAGCTCGTGATACTGATAGACACTTTGTGAAGGTGATGAG
GCTCATTCATCAGCGTTATTGCACCTTAGAAATCAAGTTTATGTTCCCCA
TGAGTTTTACCCGAACTACTGGACAAAATGAAGTGAGGTGAGGCATACTT
GTCAAATGGACCCCCGCACGACCTGTCCAGTGATCATGTCGCCACGATGC
ATTGCCCGCCTCTCGCGTGGTCGACTGAATGCCCACTAGGAGACTCGCGG
TCGATGCCAACAAATCCAACTCCGATGCCGCACAGACGTCAGTCGCCGGG
GTCGAGGCCAACAACGGCAATCGCCAGAAGGAACTGCGGGCGGAAATGCA
CGCCATCGGTGATAAATTAACCGTCAGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16985:1848..3628-

>mRNA_Ecto-sp13_S_contig16985.4972.1 ID=mRNA_Ecto-sp13_S_contig16985.4972.1|Name=mRNA_Ecto-sp13_S_contig16985.4972.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16985:1848..3628- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACTGACCGAACCAAAATTAAAGGGGTCCGGGCGCCCTTGTCCAA
ACGCCCCTCCTCGAGCCGGAAGAACTGTGACCGATGTTTCCAGAAGAAGA
CAAAATGCTCTGCGCCGTTCGGTAAGGACAGCCCGTGCCGGTCGTGCCGA
AAGAATGGGGTTGATTGCGTCTTCTCTGACCGGCAGAAGACGGGGCCAAA
GGCAAAAGGGGCCAAAGGAGTGTCAAGCTCACCGGGAGTAAGTTCCGTCA
CCCAGGGCGGAAGGTTGCGCAGGACCGTCGAAGAACCTATGAGAGCTGCG
TCGGAGAGGGCACGGTCATTGACCCTTCAGACGTCGGGTCATGAAGCCGA
GACGACTGGAGCGGCATACGCTCTCGATGCGAGCGAAGGTCTTGCATCGC
GGTGGACCACGGCATACTGGAGACTCGCGGTCGATGCCAACAAATCCAAC
TCCGATGCCGCACAGACGTCAGTCGCCGGGGTCGAGGCCAACAACGGCAA
TCGCCAGAAGGAACTGCGGGCGGAAATGCACGCCATCGGTGATAAATTAA
CCGTCAGGTGG
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