mRNA_Ecto-sp13_S_contig16978.4967.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16978.4967.1
Unique NamemRNA_Ecto-sp13_S_contig16978.4967.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 6.330e-158
Identity = 233/265 (87.92%), Postives = 237/265 (89.43%), Query Frame = 1
Query:    1 EDGTRETQEEHNRLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            EDGTRETQEEH+RLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTT   T+PD E AAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVD+                      + GGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY
Sbjct:  258 EDGTRETQEEHSRLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTXX-TTPDGEIAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDV----------------------EQGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 499          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A7S0FTU8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTU8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 3.290e-83
Identity = 147/276 (53.26%), Postives = 176/276 (63.77%), Query Frame = 1
Query:    4 DGTRE-------TQEEHNRLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHR-RGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGG----AGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            DGTRE        + EH +LLEE     Q  D    GLWEESF GH DSKP GP SVGMD+ FPGS H++G+PEHA+S  L+TT  T +           + +PYRLY LDVFEYELD + ALYG IPV++     G TAG+FWFNPTETFVD+  P                  N  GG    AG G    ++SE G +DL LLPGP P ++++QY  +TG+  LPPMFSLG+HQCRWNYRDE DV +V   FEE D+PYDV+WLDIEHTDGKRY
Sbjct:   95 DGTREERPIEDEAEVEHRKLLEE-----QSSDLDREGLWEESFGGHTDSKPYGPMSVGMDIKFPGSSHLFGLPEHASSTVLQTTHGTDSK----------YHDPYRLYNLDVFEYELDETMALYGEIPVIISQSLSGGTAGIFWFNPTETFVDVYGP------------------NDDGGIGDTAGHGTTTHFMSESGVMDLFLLPGPDPHSLYEQYGRLTGRVSLPPMFSLGYHQCRWNYRDEPDVYAVHEKFEELDYPYDVLWLDIEHTDGKRY 337          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A1Z5JSS4_FISSO (Alpha 1,3-glucosidase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSS4_FISSO)

HSP 1 Score: 268 bits (686), Expect = 1.690e-81
Identity = 145/268 (54.10%), Postives = 169/268 (63.06%), Query Frame = 1
Query:    4 DGTRETQEEHNRLLEEAEAARQGKDESGL---GLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRR-GQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            DGTRE +EE      E E  RQ  +E  L   GLWEE+F  H DSKP GP SVGMD+ FPGS H+YGIPEHA+S  LK T               H+ EPYRLY LDVFEYELD + ALYGAIP ML   +   + GVFWFNP+ETFVDI +   S                          A WISE G +DL LLPGP P ++++QYA++TG   LPPMFSLG+HQCRWNY+DE+DV  V   FEE D+PYDV+WLDIEHTDGKRY
Sbjct:  273 DGTREEREEIKEEAVEEEDHRQLTEEQTLDPEGLWEETFSSHKDSKPFGPMSVGMDISFPGSKHLYGIPEHASSAVLKATR----------GEGSHYKEPYRLYNLDVFEYELDETMALYGAIPFMLSQSKTAGSVGVFWFNPSETFVDITSTDSSS------------------------TAHWISESGVIDLFLLPGPDPSSIYQQYAKLTGTTPLPPMFSLGYHQCRWNYKDEKDVYYVHEKFEELDYPYDVLWLDIEHTDGKRY 506          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A835Z3X1_9STRA (Alpha-glucosidase II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3X1_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.310e-80
Identity = 136/235 (57.87%), Postives = 156/235 (66.38%), Query Frame = 1
Query:   91 GLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            GL EE FDGH D+KP G TSVGMDV+FPGS  +YGIPEHAASM+LK TT    S          +S+PYRLYTLDVFEYELD   ALYGAIP+ + H  G TA  FW+NP+ETFVD                              GK  RW+SE G +DL++LPGPTP  +FKQY  +TG P +PP FS+ FHQCRWNYRDE DV +VDAGFE  D PYDV+WLDIEHTDGKRY
Sbjct:  175 GLGEERFDGHVDTKPFGATSVGMDVWFPGSQELYGIPEHAASMALKATTGDGAS----------YSDPYRLYTLDVFEYELDVPMALYGAIPLAVSHGAGGTAAAFWWNPSETFVD-----------------------------GGKGVRWLSESGVVDLMILPGPTPADMFKQYMLLTGAPAMPPHFSVAFHQCRWNYRDEADVAAVDAGFEAEDIPYDVLWLDIEHTDGKRY 370          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A7S2STM5_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM5_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.150e-79
Identity = 135/265 (50.94%), Postives = 169/265 (63.77%), Query Frame = 1
Query:    1 EDGTRETQEEHNRLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            EDGTRE +   N        A + K  +G G W+E+F GH DSKP GP SVGMD+ FPG+ H++GIPEHA  +SL+ TT     P+       H+S+PYR+YTLDVFEY+LD   ALYG IP+++GH    + G FWFNPTETF+D+                           G+  R  WISE G +DL+LLPGPTP  +  Q+    G  ELPP+F+LG+HQCRWNY+DE+DV  V+A FEE DFPYDV+WLDIEHTDGKRY
Sbjct:  241 EDGTREEKVRDN--------AEEEKLRNGDGFWQETFAGHTDSKPLGPASVGMDIDFPGAQHLFGIPEHATRLSLQPTT----GPNA------HYSDPYRMYTLDVFEYDLDVPMALYGGIPMVMGHTASASVGAFWFNPTETFIDVEKD------------------------GKASRTHWISESGIVDLMLLPGPTPKDILHQFTSAVGTQELPPLFALGYHQCRWNYKDEKDVAQVEAKFEELDFPYDVLWLDIEHTDGKRY 463          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A7S2FWR3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FWR3_9STRA)

HSP 1 Score: 265 bits (676), Expect = 1.220e-78
Identity = 132/235 (56.17%), Postives = 158/235 (67.23%), Query Frame = 1
Query:   91 GLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            G WEESF GH DSKP GP SVG+DV FPGS H+YGIPEHA+SM+LK TT     P  +      +S+PYRLYTLDVFEY+LD   ALYG IP++  H    T G FWFNPTETF+DI                  E  +++       R+RWISE G +DL+L+PGPTP     Q+ ++ G  +LPPMFSLG+HQCRWNY+DE DV  V A FEE +FPYDV+WLDIEHTDGKRY
Sbjct:  246 GFWEESFGGHTDSKPLGPASVGIDVDFPGSKHLYGIPEHASSMALKATT----GPGAD------YSDPYRLYTLDVFEYDLDVPMALYGGIPLVWSHTTRGTVGAFWFNPTETFIDI------------------EKDDKSA------RSRWISESGIVDLMLIPGPTPADAISQFTQLVGTTDLPPMFSLGYHQCRWNYKDEADVAQVHAKFEELNFPYDVLWLDIEHTDGKRY 446          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A7S1D5H9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D5H9_CYCTE)

HSP 1 Score: 259 bits (662), Expect = 7.300e-78
Identity = 136/272 (50.00%), Postives = 171/272 (62.87%), Query Frame = 1
Query:    4 DGTRETQEE-------HNRLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHR-RGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            DGTRE ++E       H +L  E++  R+G       +WEE F  H DSKP GP SVGMD+ FP S H+YG+PEHA+S  L+ T        +   A  HFSEPYRLY LDVFEYELD + ALYG +P+++ H  +  T+GVFWFNPTETFVD+                           GE K   W+SE G +D+  +PGP+P  +++QYA +TGK  LPPMFSLG+HQCRWNY+DE DV +V   FE  D+PYDV+WLDIEHTDGKRY
Sbjct:   15 DGTREEKKEVEEETSTHRKLTTESDLDREG-------MWEEKFSSHHDSKPYGPMSVGMDITFPNSKHIYGLPEHASSTILQGT--------QGDGA--HFSEPYRLYNLDVFEYELDETMALYGEVPLVVSHSVKTGTSGVFWFNPTETFVDVMD------------------------EGESKSTHWMSESGIVDIFFMPGPSPSELYEQYALLTGKLALPPMFSLGYHQCRWNYKDEADVYNVHGHFESLDYPYDVLWLDIEHTDGKRY 245          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A812UNB7_9DINO (ModA protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812UNB7_9DINO)

HSP 1 Score: 262 bits (669), Expect = 9.430e-78
Identity = 136/250 (54.40%), Postives = 164/250 (65.60%), Query Frame = 1
Query:   58 AARQGKDESG---LGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLG-HRRGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            A  QG++ +G    G+WEESF  H D+KP+GP SVG D+ FP +  VYGIPEHA  ++LK T       D        +SEPYRLY LDVFEYE+D+  ALYG+IPVM+  +  G+ AGVFW NPTETFVD+                        G +G GK +RW+SE G  D+ +L GPT  AVFKQYA +TG   LPP F+L +HQCRWNY+DE DV +VDAGFEE DFPYDVIWLDIEHTDGKRY
Sbjct:  208 AGAQGRELAGHDQAGMWEESFGSHTDTKPNGPMSVGSDISFPFASAVYGIPEHATDLALKHT-------DGSAGG---YSEPYRLYNLDVFEYEMDNPMALYGSIPVMVAANAEGRAAGVFWNNPTETFVDV----------------------AAGPSGSGKTSRWMSESGVFDVWVLAGPTAHAVFKQYASITGTQALPPKFALAYHQCRWNYKDEGDVAAVDAGFEEHDFPYDVIWLDIEHTDGKRY 425          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A401Q7W5_SCYTO (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401Q7W5_SCYTO)

HSP 1 Score: 249 bits (637), Expect = 3.140e-77
Identity = 128/246 (52.03%), Postives = 160/246 (65.04%), Query Frame = 1
Query:   79 ESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRRGQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETH-----NQTGGAGEGKRA--RWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            E   G+WEE+F  H DSKP+GP+SVG+D   PG +HVYGIPEHA ++ LKTT                  +PYRLY LDVF+YE+++  ALYGA+P+ML H   +T G+FW N  ET+VDI            S N  G+T      +   GA E  +   RWISE G +D+ +L GP+P  VF+QYA +TG   LPP+F++G+HQCRWNY DE DV SVDAGF+E D PYDVIWLDIEHTDGKRY
Sbjct:   41 EDEAGMWEETFKTHTDSKPNGPSSVGLDFSLPGFEHVYGIPEHADTLKLKTT---------------DGGDPYRLYNLDVFQYEINNPMALYGAVPLMLAHNVRRTMGLFWLNAAETWVDI------------SSNTAGKTLFGKMLDYVQGANEIPQTDVRWISESGIIDVFVLLGPSPFDVFRQYASLTGTQALPPLFAIGYHQCRWNYNDEDDVRSVDAGFDEHDIPYDVIWLDIEHTDGKRY 259          
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Match: A0A7S4K6T3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K6T3_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.580e-76
Identity = 143/272 (52.57%), Postives = 176/272 (64.71%), Query Frame = 1
Query:    4 DGTRETQE-------EHNRLLEEAEAARQGKDESGLGLWEESFDGHPDSKPDGPTSVGMDVYFPGSDHVYGIPEHAASMSLKTTTTTPTSPDEETAAPPHFSEPYRLYTLDVFEYELDSSAALYGAIPVMLGHRR-GQTAGVFWFNPTETFVDIPTPFPSMPLPLLSHNPPGETHNQTGGAGEGKRARWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQDVLSVDAGFEERDFPYDVIWLDIEHTDGKRY 795
            DGTRE ++       EH +LLEE     Q  D    G+WEESF  H DSKP+GP SVG+D+ FP S H++G+PEHA+S+ L+TT         E A    +++PYRLY LDVFEYELD + ALYG IP+++   + G TAG F FNP+ETFVD+           L   P G     TGG     R  W++E G LDL LLPG T   ++KQYA +TG   LPPMFSLG+HQCRWNYRDE DV +V + FEE D+PYDV+WLDIEHTDGKRY
Sbjct:  377 DGTREERKVEGEAEAEHRKLLEE-----QSPDLDREGMWEESFSSHHDSKPNGPMSVGLDITFPSSRHIFGLPEHASSLVLQTT-------HGEGAK---YNDPYRLYNLDVFEYELDETMALYGHIPLVISQSKDGGTAGAFMFNPSETFVDVYDDAQPTKDQKLEVVPKGSASGTTGGM----RTHWMAESGVLDLFLLPGRTAPDLYKQYARLTGYASLPPMFSLGYHQCRWNYRDEPDVYAVHSKFEELDYPYDVLWLDIEHTDGKRY 629          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16978.4967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLR8_9PHAE6.330e-15887.92Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A7S0FTU8_9STRA3.290e-8353.26Hypothetical protein (Fragment) n=2 Tax=Minutocell... [more]
A0A1Z5JSS4_FISSO1.690e-8154.10Alpha 1,3-glucosidase n=2 Tax=Fistulifera solaris ... [more]
A0A835Z3X1_9STRA1.310e-8057.87Alpha-glucosidase II n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2STM5_9STRA1.150e-7950.94Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S2FWR3_9STRA1.220e-7856.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1D5H9_CYCTE7.300e-7850.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A812UNB7_9DINO9.430e-7854.40ModA protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A401Q7W5_SCYTO3.140e-7752.03Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
A0A7S4K6T3_9STRA1.580e-7652.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16978contigEcto-sp13_S_contig16978:2..3789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size795
Hectar predicted targeting categoryother localisation
Exons5
Cds size753
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16978.4967.1prot_Ecto-sp13_S_contig16978.4967.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16978 40..3785 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.374811-UTR-Ecto-sp13_S_contig16978:1..391681462888.374811-UTR-Ecto-sp13_S_contig16978:1..39Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16978 2..39 -
1681462888.4347272-UTR-Ecto-sp13_S_contig16978:3785..37891681462888.4347272-UTR-Ecto-sp13_S_contig16978:3785..3789Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16978 3786..3789 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462888.3838503-CDS-Ecto-sp13_S_contig16978:39..941681462888.3838503-CDS-Ecto-sp13_S_contig16978:39..94Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16978 40..94 -
1681462888.394741-CDS-Ecto-sp13_S_contig16978:929..11931681462888.394741-CDS-Ecto-sp13_S_contig16978:929..1193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16978 930..1193 -
1681462888.4057531-CDS-Ecto-sp13_S_contig16978:1857..21201681462888.4057531-CDS-Ecto-sp13_S_contig16978:1857..2120Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16978 1858..2120 -
1681462888.4153378-CDS-Ecto-sp13_S_contig16978:2537..26331681462888.4153378-CDS-Ecto-sp13_S_contig16978:2537..2633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16978 2538..2633 -
1681462888.4255483-CDS-Ecto-sp13_S_contig16978:3710..37851681462888.4255483-CDS-Ecto-sp13_S_contig16978:3710..3785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16978 3711..3785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16978.4967.1

>prot_Ecto-sp13_S_contig16978.4967.1 ID=prot_Ecto-sp13_S_contig16978.4967.1|Name=mRNA_Ecto-sp13_S_contig16978.4967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
MARGKRRKSTTGSSRKQRRPGRARTRAGWVFGRRASMDIPTASPMVPPAW
AWTSTSQVPTTSTASRSTRPRCPSRPPPPPPPRRTKKPRRRRTFRSRTGC
TPSTCSSTSWTRRPLCTEQYPSCWGTAGGKPQGYSGSTPRRLSSTYLHRF
RPCRCRFSLTTPRAKHTTKQAALGRASGRGGSAREALSTSSCCRGPRPAR
CSSSTPRLRESRSCPPCSAWVSISADGTIATSRMCYRSTPASRSATSRTT
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mRNA from alignment at Ecto-sp13_S_contig16978:2..3789-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16978.4967.1 ID=mRNA_Ecto-sp13_S_contig16978.4967.1|Name=mRNA_Ecto-sp13_S_contig16978.4967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16978:2..3789- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGATGGCACGAGGGAAACGCAGGAAGAGCACAACAGGCTCCTCGAGGA AGCAGAGGCGGCCAGGCAGGGCAAGGACGGTGAGGTACAATTGCGCGATT GGAGTTGGTGGTGGTGGTGATAGTGTTGGTGGTGTTTGTGGTAGTGTTGG TGGTGGTGTGAACACGGACGGTGAGATGATGGGCGGTTGGAGTGTGCCGT CGAGATGCTGGCGTTGTTGGAGTTGACAGAGGCGGAGGCGTTGGTTGTGT CAGTGGAGGTGATGGGTTTGAGAAAAACACTAATATGATATTTTTTCTTG TTTTCGACTTTTGACGCTGATCGCCAAGCCTCGCGCTAGCGTGCGAAAGC CAAAACTGTTCTTTCGCGGCGTTGCTGTCTGCGCTGACGCTGATCAAATG TCGAAAAACAACCCTGCCCGGATTCAACAGCTGTGTCGTACTTCTTGTTC CGATGTCGTCCAAGCCAGCACTTCCACGACTGTAAAAGATACTTGAAAGA AGATTACTCGTGCTGCTGTTGCTGCTAAGGAATGACCGGAGACCACGACA AATCGCACGCGCACAGATCTGACTCTCCTGGATCCCAGATTCTCCGCAAC ACGGAAGGTTTTCCAGAGCCTTGTCAACGTCTCGCCTTGGGCTTGAAATT TCGCGCCCATGTACCAGACAATCGCAGGCGGTGATGCTGGCACACACACA CCTTTTCCCCTTTCTTGGCTCGCCGCGGCCCCCCATCGACAAGCCACCCT TTTTCATGGCGCCACAGGATAGCTAATCAACCGCCGCTGCCGCCGCTGTA GTTTGGTGTTGAGAGGCGCCGTGGTTTCCGGGGCACACACTCTCGCGAGG CTCGTATTTTGACACACAATGCCCGGTACTCAACAGCCTCCCACCTACTG AGCTTTCCCTGCACAGCTTTCGGCTTGCCTATTTCGCCGTGTTTTTCCTG ACGTTCCGGTCTCTTTTTCGTCTTTCTACCCGCCTGTCTCTGCCTGCCTG CCTTCCTTTCTTCCACGGTACGATGCCTGCCTTCCCCGGCTTGATGCTTG CCTTCCACGGTGCGATACCTGCCTTCCACGGTACGATGCCTTCCTTCCAC GGCACAATGAATGGTGGGGGTGGGGGGGGCTTACGATGGTGCTGGGGTGG TGGCAGAGAGCGGGTTGGGTCTTTGGGAGGAGAGCTTCGATGGACATCCC GACAGCAAGCCCGATGGTCCCACCAGCGTGGGCATGGACGTCTACTTCCC AGGTAGGAAAACAAACCCATGCGTGTGTGTGTCTTTCTCTGTAGCATCGA CAGCGCTAACCGGCTGACGTGTGTGTGTTCGTGTGTGCATGCGTTTGTTA CTAGCATCGGCCACGCTTACCGGCTGACGTGTTTGGGTGTGCGTGTTTGC ACGTCTTCATTACTAGCATCGACCGCGCTGATAGGCCAAGTAGACTCCGT GTGGTGGAAAACGGAAAATGTTCTGAAGACCTTGTGTGAGTTAGAGAAAG AGAGAGAGGGGGGGGGGGGCAGTTGAGAGTGGGCTATAAAGTCATCGTCT CTGGGGTTTCCACCTGTTGCGTGATACCGTGTGTTGATACACTGGGTCCT GACTCAACGTTACTACTTCCGAAAGTCGACCCATACAAAACACACTCGAC CCGGCGCCCACCCCCGTAGGTTCCGACCACGTCTACGGCATCCCGGAGCA CGCGGCCTCGATGTCCCTCAAGACCACCACCACCACCCCCACCTCGCCGG ACGAAGAAACCGCGGCGCCGCCGCACTTTTCGGAGCCGTACCGGCTGTAC ACCCTCGACGTGTTCGAGTACGAGCTGGACTCGTCGGCCGCTCTGTACGG AGCAATACCCGTCATGCTGGGGCACCGCAGGGGGCAAACCGCAGGGGTAT TCTGGTTCAACCCCACGGAGACTTTCGTCGACGTAGAACAAGGTGTGTGA AAAACGGCCCCCCTTTTTTTTTTTTTTTTTACGGCAAGTTGCTTGTGCGC GCCGCCTTTTTTTTTATTATTTTTTTTCGTGGCAAGGCGTGAGGAGCGCC CATGTTGCACTTGTTCTGTTTCGCTTTTTTGTTTTCACGATGCGTGTAAG GTAGGATGCACGGAAGGACCGGAGTATTTTCATGGTGTTGGGGACTGTTT CACAGCAAATTTTGAGCGCCCGCTTTCTTCTTCTTTGTTTTTTCTGTTTC ACTGGTTCCGTGTGACCGTGTTGGATAAATAGGCATATACGCAAAGGACC GATTTTGTGCGTGTCGTTGTTGTTGGCCTGCTCACAAGCATGATGGTATG AGGCCCGGGCGTGACTGAGCCTCCATGTCAACTTTCCGGGACTGGTATCC ATGAGAAATGGGCCGCTCGGCACGTTTGAGTAGCCTAGCTGTTGCCACCA AATGGCCACGTATTACGTACGCACAGCAGCGGCAGCAGGAGCAGCCGGGC AGCAGCAACGTTAAGAGTGTGCTCGCTGTTCTGCTGTGTTTGCCGCAGTA GGAGCGACTTCTTTTCATTGGTCAGCCATGAGCGCGTTCTCCCCTACTTG AATAATATACACAAACACACACACCTTTGGTGCTGGATAATAAAAGATAC CTACACCGTTTCCGTCCATGCCGCTGCCGCTTCTCTCTCACAACCCCCCG GGCGAAACACACAACCAAACAGGCGGCGCTGGGGAGGGCAAGCGGGCGCG GTGGATCAGCGAGGGAGGCGCTCTCGACCTCGTCCTGCTGCCGGGGCCCA CGCCCGGCGCGGTGTTCAAGCAGTACGCCGAGGTTACGGGAAAGCCGGAG CTGCCCCCCATGTTCAGCCTGGGTTTCCATCAGTGCCGATGGAACTATCG CGACGAGCAGGTACAGTATGGTTTGGAACATCAAGAAACACCCGCGTGTG CCTTCATGAGGACCGGGGGTGTCGAGCGCACCCCGGGTTATGGTACGGAA AACCGGGAAACATCGGTGTTCGCCGTCATGAAAACCGGGCGGGGGGGGGG AAGTGTCGAGCGCACCAGGGGTTCGGTATGGAAGATGAAGGAAATGCTGC GTCGTGTGTCTTTTATGAGGCGGAAAAACTGGCCGGGAAAAGACGGGGGG GTGGGGCTCACGCGGGGGACGGTATGGAAGATCAATAAACAGCCGTGTGT GTGTCTTCATAAGGCACGGAAAAACCGAGCGGGTGGGGGGGTCGAGCCCA CCGGGGTGGGGGCAACATGGTGCATGTAAGATAAGAGTGTGGTCGGTCTT GGCTCTTGTCGTTGTCTGTGTTCTTGCGCGGCTGGTGCGACCGACTACCC TTATGGGCCGGAAAAAGTAGTAAAGATGGGGCGGATCACTTGAGGCGTGC AGAGAGAGAGAGACAGCGCTTCGTCACCTGTGCCGAGACAGCCGCAGCGA CGTCGCTGCACCATGCCGAACCCTGACGCCTATACACCAGACGGAAGAGA AGCGATGCGATGTGACGAAAAACACTTAAAAATGTGACAACATGAGGAAA AAAGAAATGTACAACAAAAAATGCCGAAAAAAAGGAAACAAGGTATACAT ACACTTTTTTTCACGAACTCTTCCCTGCTTCCCTGCGGATATAGATGAAC CCGTTTTGTTTTGGAAAGAAAAAAAATAACGGTAACGACGACAGCAGCAA CGCAACTCCCGTCCGCGCCCGCTTCTCCCCGTCCAAACTCTCCAGGATGT GCTATCGGTCGACGCCGGCTTCGAGGAGCGCGACTTCCCGTACGACGTGA TCTGGCTGGACATCGAGCACACGGACGGCAAGCGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16978:2..3789-

>mRNA_Ecto-sp13_S_contig16978.4967.1 ID=mRNA_Ecto-sp13_S_contig16978.4967.1|Name=mRNA_Ecto-sp13_S_contig16978.4967.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16978:2..3789- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCACGAGGGAAACGCAGGAAGAGCACAACAGGCTCCTCGAGGAAGCA
GAGGCGGCCAGGCAGGGCAAGGACGAGAGCGGGTTGGGTCTTTGGGAGGA
GAGCTTCGATGGACATCCCGACAGCAAGCCCGATGGTCCCACCAGCGTGG
GCATGGACGTCTACTTCCCAGGTTCCGACCACGTCTACGGCATCCCGGAG
CACGCGGCCTCGATGTCCCTCAAGACCACCACCACCACCCCCACCTCGCC
GGACGAAGAAACCGCGGCGCCGCCGCACTTTTCGGAGCCGTACCGGCTGT
ACACCCTCGACGTGTTCGAGTACGAGCTGGACTCGTCGGCCGCTCTGTAC
GGAGCAATACCCGTCATGCTGGGGCACCGCAGGGGGCAAACCGCAGGGGT
ATTCTGGTTCAACCCCACGGAGACTTTCGTCGACATACCTACACCGTTTC
CGTCCATGCCGCTGCCGCTTCTCTCTCACAACCCCCCGGGCGAAACACAC
AACCAAACAGGCGGCGCTGGGGAGGGCAAGCGGGCGCGGTGGATCAGCGA
GGGAGGCGCTCTCGACCTCGTCCTGCTGCCGGGGCCCACGCCCGGCGCGG
TGTTCAAGCAGTACGCCGAGGTTACGGGAAAGCCGGAGCTGCCCCCCATG
TTCAGCCTGGGTTTCCATCAGTGCCGATGGAACTATCGCGACGAGCAGGA
TGTGCTATCGGTCGACGCCGGCTTCGAGGAGCGCGACTTCCCGTACGACG
TGA
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