mRNA_Ecto-sp13_S_contig16951.4960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16951.4960.1
Unique NamemRNA_Ecto-sp13_S_contig16951.4960.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: D8LC24_ECTSI (Eukaryotic translation initiation factor 2A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC24_ECTSI)

HSP 1 Score: 504 bits (1298), Expect = 1.090e-174
Identity = 247/255 (96.86%), Postives = 247/255 (96.86%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQ       IYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQ EASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG
Sbjct:  113 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQ-------IYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQ-EASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 359
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A836C9Y7_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y7_9STRA)

HSP 1 Score: 275 bits (703), Expect = 2.850e-85
Identity = 140/261 (53.64%), Postives = 184/261 (70.50%), Query Frame = 1 
Query:    1 WQPPSKSVDGE-RPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSD-----TPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P+K+ DGE R PGNLV W  AS  E LR+SQKQLR++ WPSLQW++DE +AAR   + IQ   + + I H       +V     P+L GFS+APG AP+R+A FV E KGKP +++++    SD        ASRSSF+AQ E SF+W+PDG A++ + STD+DATG+SYYGS+G+FL+H+DG  DCAIAP KEG V DVQW P  S+ G +F V AG+MP+ + LY+ KG+  F FG+AHRNT++WS HGRFL +AG
Sbjct:  119 WQNPAKTQDGEPRAPGNLVAWEVASGREVLRLSQKQLRQATWPSLQWTADESVAARATADQIQVTDNPT-IGHSC-----LVKAADVPRLNGFSVAPGAAPFRVAAFVAEHKGKPARVTIYQVDRSDGSAAMVATASRSSFQAQ-EISFRWAPDGSALVGVVSTDLDATGQSYYGSSGIFLLHSDGSHDCAIAPPKEGAVHDVQWAPA-SSAGRRFAVCAGTMPTQTALYSAKGDQVFMFGTAHRNTLAWSAHGRFLCIAG 371
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A5D6XXE7_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXE7_9STRA)

HSP 1 Score: 257 bits (657), Expect = 2.180e-78
Identity = 127/255 (49.80%), Postives = 166/255 (65.10%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K  D E   GNL+VW+  S +E  R +QK   R +WPS+QWSSDE I AR   N +        +Y GQ+   G + ++  P  A FS+APG+APY++A FVPE KGKP  + ++ +P  +T +A +S F+AQ E + KWSP G A++  T TDVD TGKSYYG TGLF + +DGQ+DC +   KEG + DVQW P     G  FVV+AG+MP  +TLY+ K  P FEFG+A RN +SWSPHGRFL +AG
Sbjct:  104 WQRPVK--DSEL--GNLIVWNAVSGAEVARFNQKSYSRDSWPSIQWSSDETICARQSANGVM-------LYSGQNMSAGSIGQINLPNTASFSVAPGSAPYKIAAFVPEKKGKPASVRVYQFPGLETVVAHKSFFKAQ-EVAMKWSPTGSALIIETRTDVDTTGKSYYGETGLFFLQSDGQYDCIVPLTKEGPIHDVQWDP----TGRGFVVLAGTMPCNATLYDNKAIPIFEFGAAPRNHVSWSPHGRFLCIAG 342
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A024UG74_9STRA (Eukaryotic translation initiation factor 2A n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UG74_9STRA)

HSP 1 Score: 254 bits (648), Expect = 3.020e-77
Identity = 133/257 (51.75%), Postives = 170/257 (66.15%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTP--IASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P+K  D     GNL+VW  A+ S   R +QK   R  WPSLQWSSDE+IAAR  +N +Q       +++G+    G +  +     A FS+APG  PY++A FVPE KGKP  + ++ +P + T   +A +S ++AQ E   KWSP+G A++  TSTDVD +GKSYYG T LF + +DGQ+DC+I   KEGTV DVQW P  ++KG  FVVIAGSMPS +TLY+ K  P FEFGSA RN ISWSPHGRFL LAG
Sbjct:  109 WQRPAK--DAAPTDGNLIVWDAATGSIIARFNQKTYSREQWPSLQWSSDELIAARQSNNGVQ-------VFNGRAIGAGSIGNIALENTASFSVAPGGLPYKIALFVPEKKGKPASVRIFPFPPNATQSHVAFKSFYKAQ-EVKMKWSPNGSALIIETSTDVDTSGKSYYGETNLFFVQSDGQYDCSIPLTKEGTVHDVQWDP--TSKG--FVVIAGSMPSNATLYDNKACPVFEFGSAWRNVISWSPHGRFLCLAG 351
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A485KMC5_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMC5_9STRA)

HSP 1 Score: 250 bits (639), Expect = 5.820e-76
Identity = 131/257 (50.97%), Postives = 167/257 (64.98%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYP--VSDTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K  D     GNL+VW   + S   R SQK   R  WPSLQWSSDE+IAAR  ++ +Q       +++G+    G +  +       FS+APG  PY++A FVPE KGKP  + ++ +P   S T +A +S ++AQ E   KWSP+G A++  TSTDVD +GKSYYG T LF + +DGQ+DC+I   KEGTV DVQW P  ++KG  FVVIAG+MPS +TLY+ K  P FEFGSA RN ISWSPHGRFL LAG
Sbjct:  103 WQRPVK--DAAPTEGNLIVWDATNGSIVARFSQKTYSRDQWPSLQWSSDELIAARMSNSGVQ-------VFNGRAIGAGSIGNIALENTTNFSVAPGGLPYKIALFVPEKKGKPASVRIFPFPPNASQTHVAFKSFYKAQ-EVKMKWSPNGNALIIETSTDVDTSGKSYYGETNLFFVQSDGQYDCSIPLTKEGTVHDVQWDP--TSKG--FVVIAGAMPSNATLYDNKACPVFEFGSAWRNVISWSPHGRFLCLAG 345
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: K3X792_GLOUD (Eukaryotic translation initiation factor 2A n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X792_GLOUD)

HSP 1 Score: 250 bits (639), Expect = 2.230e-75
Identity = 122/255 (47.84%), Postives = 161/255 (63.14%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K  +     GNL+VW   + +E  R +QK   R  WPS+QWSSDE I  R   N +        +Y G +   G + ++  P    FS+APG+APY++A FVPE KGKP  + ++ +P  +T +AS+S ++AQ E S KWSP+G A++  T TDVD TGKSYYG TGLF + +DG +DC +   KEG + DVQW P     G  FVV+AGSMP  +TLY+ K  P FEFG+A RN +SWSPHGRFL +AG
Sbjct:  107 WQRPQKEAEQ----GNLIVWDATTGAEVARFNQKSYSRDNWPSIQWSSDETICGRQSANGVV-------LYSGTNIAAGSIGQINLPNTTNFSVAPGSAPYKIALFVPEKKGKPASVKVYHFPGLETVVASKSFYKAQ-EVSMKWSPNGSALVIETRTDVDTTGKSYYGETGLFFLQSDGAYDCIVPLTKEGQIHDVQWDP----TGRGFVVLAGSMPCNATLYDNKAIPIFEFGAAPRNHVSWSPHGRFLCIAG 345
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BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A8K1CP96_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP96_PYTOL)

HSP 1 Score: 248 bits (634), Expect = 5.250e-75
Identity = 121/255 (47.45%), Postives = 162/255 (63.53%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K    ++  GNL+VW  A      R +QK   + AWPS+QWSSDE I  R   N +        +Y+G+    G + ++  P    FS+APG APY++A FVPE KGKP  + ++ +P  DT +AS+S ++AQ E + KWSP+G A++  T TDVD +GKSYYG TGLF + +DGQ+DC +   KEG V DVQW P     G  FVV+AG+MP  +TLY+ K  P F+FG+A RN +SWSPHGRFL +AG
Sbjct:  109 WQRPQK----DQTEGNLIVWRVADGQAVARFNQKNYSKDAWPSIQWSSDETICGRQSANGVV-------LYNGRDLTTGSIGQINLPNTTAFSVAPGLAPYKIAAFVPEKKGKPASVKVYQFPGLDTIVASKSFYKAQ-EVTMKWSPNGSALVIETRTDVDTSGKSYYGETGLFFLQSDGQYDCIVPLTKEGQVHDVQWDP----TGRGFVVLAGAMPCHATLYDNKAVPIFQFGAAPRNHVSWSPHGRFLCIAG 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A6G0X7T5_9STRA (Eukaryotic translation initiation factor 2A n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7T5_9STRA)

HSP 1 Score: 246 bits (628), Expect = 2.320e-74
Identity = 130/258 (50.39%), Postives = 168/258 (65.12%), Query Frame = 1 
Query:    1 WQPPSK-SVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVSDTP--IASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K + DG    GNL+VW   + S   R +QK   R  WPSLQWSSDE+IAAR  +N +Q       +++G+    G +  +       FS+APG  PY++A FVPE KGKP  + ++ +P + T   +A +S ++AQ E   KWSP+G A++  TSTDVD +GKSYYG T LF + +DGQ+DC+I   KEG V DVQW P  ++KG  FVVIAG+MPS +TLY+ K  P FEFGSA RN ISWSPHGRFL LAG
Sbjct:  107 WQRPVKDATDG----GNLIVWDAKNGSIIARFNQKTYSRDQWPSLQWSSDELIAARLSNNGVQ-------VFNGRAIGAGSIGNITLENTTNFSVAPGGLPYKIALFVPEKKGKPASVRIFPFPPNATQSHVAFKSFYKAQ-EVKMKWSPNGNALIIETSTDVDTSGKSYYGETNLFFVQSDGQYDCSIPLTKEGAVHDVQWDP--TSKG--FVVIAGAMPSNATLYDNKACPVFEFGSAWRNVISWSPHGRFLCLAG 348
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A0P1AMJ2_PLAHL (Eukaryotic translation initiation factor 2A n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMJ2_PLAHL)

HSP 1 Score: 246 bits (627), Expect = 4.220e-74
Identity = 125/256 (48.83%), Postives = 162/256 (63.28%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVS-DTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K  D     GNL+VW  A+ SE  R +QK   R  WP  QWSSDE I AR   N I        +Y+G+      + ++  P +A FS+APG+ PY++A FVPE KGKP  + ++ +P   D P A++S ++AQ + S KWSP G A++  T TD+D +GKSYYG TGLF + +DG++DC +   KEGTV DV W P     G  FVVIAG+MP+ +TLY+ K  P FEFG+A RN ISWSPHGRFL LAG
Sbjct:  107 WQRPQKDSDL----GNLIVWDAATGSEVARFNQKSYSRDKWPPFQWSSDETICARQSVNGIV-------LYNGRGPKLDSIGQIHVPNVANFSVAPGSVPYKIAVFVPEKKGKPASVKIYQFPNQLDVPTATKSFYKAQ-DVSLKWSPTGSALIVETRTDIDTSGKSYYGETGLFFLQSDGEYDCIVPLTKEGTVHDVAWDP----TGRGFVVIAGAMPAHATLYDNKALPIFEFGAAPRNHISWSPHGRFLCLAG 346
[Close]
BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Match: A0A6G0RPP9_9STRA (Eukaryotic translation initiation factor 2A n=21 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RPP9_9STRA)

HSP 1 Score: 246 bits (627), Expect = 4.690e-74
Identity = 123/256 (48.05%), Postives = 162/256 (63.28%), Query Frame = 1 
Query:    1 WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDEVIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAPYRLATFVPELKGKPGKISLWSYPVS-DTPIASRSSFRAQQEASFKWSPDGRAVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWGPGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRFLLLAG 765
            WQ P K  +      NL+VW  A+  E  R + K   R  WP LQWSSDE I AR   N +        +Y G+    G + ++  P +A FS+APG+APY++A FVPE KGKP  + ++ +P S D P A++S ++AQ + S KWSP G A++  T TD+D +GKSYYG TGLF + +DG++DC +   KEGTV DV W P     G  FVVIAG+MP+ +TLY+ K  P FEFG+A RN +SWSPHGRFL LAG
Sbjct:  106 WQRPQKDSNLS----NLIVWDAATGKEVARFNHKSYTRDKWPPLQWSSDETICARQSANGVV-------LYSGRDIAAGSIGQINLPNVANFSVAPGSAPYKVALFVPEKKGKPASVKIYQFPNSLDAPTATKSFYKAQ-DVSLKWSPTGSALIIETRTDIDTSGKSYYGETGLFFLQSDGEYDCIVPLTKEGTVHDVAWDP----TGRGFVVIAGAMPAHATLYDNKALPVFEFGAAPRNHVSWSPHGRFLCLAG 345
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16951.4960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC24_ECTSI1.090e-17496.86Eukaryotic translation initiation factor 2A n=1 Ta... [more]
A0A836C9Y7_9STRA2.850e-8553.64Eukaryotic translation initiation factor 2A n=1 Ta... [more]
A0A5D6XXE7_9STRA2.180e-7849.80Eukaryotic translation initiation factor 2A n=1 Ta... [more]
A0A024UG74_9STRA3.020e-7751.75Eukaryotic translation initiation factor 2A n=2 Ta... [more]
A0A485KMC5_9STRA5.820e-7650.97Eukaryotic translation initiation factor 2A n=1 Ta... [more]
K3X792_GLOUD2.230e-7547.84Eukaryotic translation initiation factor 2A n=1 Ta... [more]
A0A8K1CP96_PYTOL5.250e-7547.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0X7T5_9STRA2.320e-7450.39Eukaryotic translation initiation factor 2A n=1 Ta... [more]
A0A0P1AMJ2_PLAHL4.220e-7448.83Eukaryotic translation initiation factor 2A n=1 Ta... [more]
A0A6G0RPP9_9STRA4.690e-7448.05Eukaryotic translation initiation factor 2A n=21 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16951contigEcto-sp13_S_contig16951:603..3794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score503.4
Seed ortholog evalue6e-140
Seed eggNOG ortholog2880.D8LC24
Preferred nameEIF2A
Model size765
KEGG koko:K11294,ko:K15026
KEGG Pathwayko05130,map05130
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005850,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006417,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0006996,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0015935,GO:0016043,GO:0016310,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0032268,GO:0032933,GO:0032991,GO:0033554,GO:0034248,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0042254,GO:0042255,GO:0042594,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065003,GO:0065007,GO:0070925,GO:0071501,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:1990928,GO:2000112,GO:2001141
Exons7
EggNOG free text desc.translation initiation factor binding
EggNOG OGsCOG5354@1,KOG2315@2759
Cds size765
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03012,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16951.4960.1prot_Ecto-sp13_S_contig16951.4960.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16951 603..3794 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.8879592-CDS-Ecto-sp13_S_contig16951:602..6861681462887.8879592-CDS-Ecto-sp13_S_contig16951:602..686Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 603..686 -
1681462887.899534-CDS-Ecto-sp13_S_contig16951:1234..14201681462887.899534-CDS-Ecto-sp13_S_contig16951:1234..1420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 1235..1420 -
1681462887.9113734-CDS-Ecto-sp13_S_contig16951:1777..18581681462887.9113734-CDS-Ecto-sp13_S_contig16951:1777..1858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 1778..1858 -
1681462887.9242435-CDS-Ecto-sp13_S_contig16951:2208..23171681462887.9242435-CDS-Ecto-sp13_S_contig16951:2208..2317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 2209..2317 -
1681462887.937408-CDS-Ecto-sp13_S_contig16951:2666..27641681462887.937408-CDS-Ecto-sp13_S_contig16951:2666..2764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 2667..2764 -
1681462887.9505718-CDS-Ecto-sp13_S_contig16951:2976..30941681462887.9505718-CDS-Ecto-sp13_S_contig16951:2976..3094Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 2977..3094 -
1681462887.9629688-CDS-Ecto-sp13_S_contig16951:3705..37941681462887.9629688-CDS-Ecto-sp13_S_contig16951:3705..3794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16951 3706..3794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16951.4960.1

>prot_Ecto-sp13_S_contig16951.4960.1 ID=prot_Ecto-sp13_S_contig16951.4960.1|Name=mRNA_Ecto-sp13_S_contig16951.4960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
WQPPSKSVDGERPPGNLVVWSTASWSEELRVSQKQLRRSAWPSLQWSSDE
VIAARGLDNDIQARGSLSKIYHGQHFDQGVVARVPCPKLAGFSLAPGTAP
YRLATFVPELKGKPGKISLWSYPVSDTPIASRSSFRAQQEASFKWSPDGR
AVLCLTSTDVDATGKSYYGSTGLFLMHADGQFDCAIAPAKEGTVQDVQWG
PGGSNKGNKFVVIAGSMPSTSTLYNIKGEPTFEFGSAHRNTISWSPHGRF
LLLAG
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mRNA from alignment at Ecto-sp13_S_contig16951:603..3794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16951.4960.1 ID=mRNA_Ecto-sp13_S_contig16951.4960.1|Name=mRNA_Ecto-sp13_S_contig16951.4960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16951:603..3794- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGCCGCCGAGCAAATCGGTGGACGGGGAACGGCCGCCGGGAAACCT
GGTAGTGTGGAGCACGGCGTCGTGGTCGGAGGAACTCAGGTGTGAAATAT
CTCGCTGCCGCTGCTGTTTTTTTCTTTTGTGGATTTTCCGCTGTGTTTCG
TGCGTGTGCGTTTTACCAATTCTTTTCTTGGTGGATTCTCCCCGTCCTGC
GTATTGCGTGTTCGTCGTGAGTTGGCGTCGTGAGTGTTTTGATTGCCCGT
GTCTTACCTTCTGTCCGTGTGTATCTTGGGTTTGCGTCGGTTCCTTAGTG
TTGCCTTTCGGGCGTGTGTATGCCCCCCCCCCCTCCAGCCCCTACTGAAC
CTCGTGCGCACGCACCGCCCTGTCTAGATATTTCTACGTTTTGTTGTGCT
TGCTTGCGTGGCAATGCTGTTGGTGCTACGATAGGAGCGCGTGGTCTATT
GGCATTAGTATCTGCGTCAAGAACGGCTCTCAAGCACCTTGAGTCAATCC
TAGGCCGGCACATGTGTGCATGGCTTTTCGTTCCAAAACACATAAAGTAA
GGCGCCCCTCTCGTTGCTCCTGCGCCCCTTTGTATCCTGCACTCTTGTTG
CGGCCTCAAGCCCAGCCTACGAATGTCACCGCCGTATGTACGTATCCCGT
TGGTTGATCTCTTCGTGCCGCTTGTGCCGTTGTTGACTGTGTGTATGCAG
GGTTTCCCAGAAACAGCTGCGGAGGTCGGCGTGGCCCAGCCTCCAATGGA
GCAGCGACGAGGTCATCGCCGCAAGAGGGCTGGACAACGATATACAGGCG
AGAGGCTCGCTGTCGAAAGTCGCTGGCTGAATGTGCCGCTGTGTGTGAAG
CTCGCCTCTGTCTTGCCCAAACAGATGGCCTCGTTTTTCGATGTTTTTTT
TGGTGCAAGCTATCCCTGCCAGCAATGGCTAACTTCATGCGCCGCTTTCG
AAAGTGTGTGAAGCAGCTCGCCGCTACCGTGTCCCAACAGATATCCTCGC
GTTGATGTTTTGGCGCCGTGCTTTGAACAGATCTACCACGGACAGCACTT
CGACCAGGGCGTCGTGGCCCGAGTTCCCTGTCCCAAGCTCGCCGGCTTCA
GCCTCGCACCTGGGACGGCTCCGTACAGGTCAGATATCTTGTACATACGG
CCGCTGACTTTGTTGGCACGTCGCAGCTGCTCACCGCCCTGGGCTCAGCT
CGGTTGCAATGCTTGCGAGTGTCGACATTTGGGGGGAAAACACGTCGCAA
GGTTAAAACGCAAAACTTCACGCCAAGCCTGTTTTATCCTGGAAACAAGT
TCACGTGCTTCTGCGTGATGCTATTGGCGTGCGTAAAGGAGGCTCGCACG
ATTTTCAGTTCACTGGTGTGATCTGAGCAGCAATGGTTTTGGCGTTCGTC
CACGAGTACTCACGAGCTGACGAACTTGATTCTTGCAAAACCCACTGCTC
CATCTGTTCGTTTTCCCCATACGGCAGGCTGGCGACGTTCGTGCCCGAGC
TGAAGGGCAAGCCGGGCAAGATCTCGCTGTGGTCTTACCCAGTGTCGGAC
ACGCCTATCGCCTCCAGGAGCTCCTTCCGCGCGCAGGTGACGAGGTCGGA
GAGACGAGTTGATGGGGCCCTCAGGCAATCTGTTTGAAGCAGGAACGTTT
TATATGCTGGCTTGTGTTGGTGCACACAGCTGTAGATGGTTGTTTTTGCT
CTCTTCTCGGTTTTGGCCAAGTGAGTTCCCCTATAAGCTGGCATGTATTG
GTGCACACAGCTGTAGATGGTTGTTTTTGCTCTCTTTTCGGTTTTGGCCG
AGCGAGTTCCCCTGCTGGGACCTTTTGGGTTCGTGAAACTGAGCTTGGTG
TTTGCGTGCTTGGCCCTCTCTGAGTACCCTCACCGAAAGTGTACATACCT
TAATCTCCCGATGACACAAACGTGCGCTCACTCGAGCAGGAGGCGTCCTT
CAAGTGGAGTCCCGACGGTCGAGCGGTGCTGTGCCTCACGAGCACCGACG
TAGACGCGACGGGCAAGGTGCGCTTCAAACATTAATCACGCCTACATACG
ACTTTCTTCATGTGAACATACGATGCAGTCAATTTCCGTGTGTGAACTAC
GACGTGGAACCATGGCGCTTTGCTGGGTATGGTTGAGCTTTCCGCGCCAT
GCACGTTGGCGCAAACAGCTAGACTGCTGGTTCTAGTTGAGTACTCCGCG
CAATGCACGTTGGTGCAAGCAATTGATCTACTGGTTATGGTTGAGCTTTC
CGCGCCATGCACGTTGGCGCAAACAGCTAGCCCGCTAATTCTTTGGTTGA
CTATTCCATTCAATGCCCGTACTCTTGAAACTGCTGTACTCATGCCCCCC
CCCCTTCTCTCTCCAACTCTACAGTCATACTACGGGTCTACGGGCCTGTT
TCTCATGCACGCCGACGGGCAGTTCGACTGCGCGATCGCCCCCGCCAAGG
AGGGGACTGTGCAGGACGTCCAATGGGGGCCCGGCGGATCGAACAAGGGC
AACAAGTTTGTGGTCATCGCGGGGAGCATGCCTTCCACGTCCACGCTCTA
CAACATCAAGGTGCTCGGTGGTGGTGGTGGTGTTCTGGAACGACGCGCGT
GTGTGTTAGCATCGACCGCGCTAGCCGGCCGGCCAACGGAAAGACGTCGC
CAGTCTTACAGTAGCGGGATAAAAAGGAGTTAGTCTTCAAACGGAATAGG
AAAGACGTCAGTCTTCTAGCGGGACAAAATATGTGTACTTTGATGTCTTG
GTTCATGTTGTCGTGCTTCTTGCCTCTTGTGTCTCGTGCTAGAAATTTCG
TTTGTTCTTGTTTCGGGTTTGTGTGGTGATGCGTTGTGTGGATTGGAGAG
GTTTAGCCCTGGCACCCGCGCCTCCAGGCATTGGGAGGAGAGCTATCCCT
TGAAATGAGTATCTACTTGTCGTCCGCCTGACTGTCTTTGCGTCTCTCTT
TTTTTGCCCCAACCCCCCCGCTCTCGTCGCTATGAGTCCCGCACTGTAGG
GATGCGAGACCAATGGTCTAACGACTACCGCCGCATGCGTGTGCACGAGT
CACCCCCCTTTGCCGCTGTTCCGTCTCTTACCCTTTGTCTTGCTGCCGTT
GTCGTCAGGGGGAGCCAACGTTCGAGTTCGGTAGTGCACACCGCAACACT
ATCAGCTGGAGCCCGCACGGCCGCTTTCTCTTGCTGGCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16951:603..3794-

>mRNA_Ecto-sp13_S_contig16951.4960.1 ID=mRNA_Ecto-sp13_S_contig16951.4960.1|Name=mRNA_Ecto-sp13_S_contig16951.4960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16951:603..3794- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCAGCCGCCGAGCAAATCGGTGGACGGGGAACGGCCGCCGGGAAACCT
GGTAGTGTGGAGCACGGCGTCGTGGTCGGAGGAACTCAGGGTTTCCCAGA
AACAGCTGCGGAGGTCGGCGTGGCCCAGCCTCCAATGGAGCAGCGACGAG
GTCATCGCCGCAAGAGGGCTGGACAACGATATACAGGCGAGAGGCTCGCT
GTCGAAAATCTACCACGGACAGCACTTCGACCAGGGCGTCGTGGCCCGAG
TTCCCTGTCCCAAGCTCGCCGGCTTCAGCCTCGCACCTGGGACGGCTCCG
TACAGGCTGGCGACGTTCGTGCCCGAGCTGAAGGGCAAGCCGGGCAAGAT
CTCGCTGTGGTCTTACCCAGTGTCGGACACGCCTATCGCCTCCAGGAGCT
CCTTCCGCGCGCAGCAGGAGGCGTCCTTCAAGTGGAGTCCCGACGGTCGA
GCGGTGCTGTGCCTCACGAGCACCGACGTAGACGCGACGGGCAAGTCATA
CTACGGGTCTACGGGCCTGTTTCTCATGCACGCCGACGGGCAGTTCGACT
GCGCGATCGCCCCCGCCAAGGAGGGGACTGTGCAGGACGTCCAATGGGGG
CCCGGCGGATCGAACAAGGGCAACAAGTTTGTGGTCATCGCGGGGAGCAT
GCCTTCCACGTCCACGCTCTACAACATCAAGGGGGAGCCAACGTTCGAGT
TCGGTAGTGCACACCGCAACACTATCAGCTGGAGCCCGCACGGCCGCTTT
CTCTTGCTGGCAGGT
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