mRNA_Ecto-sp13_S_contig16945.4955.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16945.4955.1
Unique NamemRNA_Ecto-sp13_S_contig16945.4955.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16945.4955.1 vs. uniprot
Match: A0A7R9U9G0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9G0_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 1.820e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:   16 QVVSVVASDGRQRRFLWTLERQRRPPDTGKWLI 114
            Q+V +   DGR R+FLWTL++QRRPP  G WL+
Sbjct:   85 QLVEIETQDGRMRKFLWTLQQQRRPPLQGCWLV 117
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BLAST of mRNA_Ecto-sp13_S_contig16945.4955.1 vs. uniprot
Match: A0A8J2WEJ8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEJ8_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 3.620e-5
Identity = 18/33 (54.55%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:   19 VVSVVASDGRQRRFLWTLERQRRPPDTGKWLIY 117
            +V+V  + G++R+FLWTL++QRRPPD G WL++
Sbjct:  139 MVTVQTNRGQERKFLWTLQQQRRPPDQGCWLVH 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16945.4955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7R9U9G0_9STRA1.820e-557.58Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J2WEJ8_9STRA3.620e-554.55Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16945contigEcto-sp13_S_contig16945:95..259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462887.6108909-CDS-Ecto-sp13_S_contig16945:94..2591681462887.6108909-CDS-Ecto-sp13_S_contig16945:94..259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16945 95..259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16945.4955.1prot_Ecto-sp13_S_contig16945.4955.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16945 95..259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16945.4955.1

>prot_Ecto-sp13_S_contig16945.4955.1 ID=prot_Ecto-sp13_S_contig16945.4955.1|Name=mRNA_Ecto-sp13_S_contig16945.4955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MRCPPQVVSVVASDGRQRRFLWTLERQRRPPDTGKWLIYGVVSSDVDGKL
VMEG*
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mRNA from alignment at Ecto-sp13_S_contig16945:95..259+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16945.4955.1 ID=mRNA_Ecto-sp13_S_contig16945.4955.1|Name=mRNA_Ecto-sp13_S_contig16945.4955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16945:95..259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTGCCCCCCTCAGGTAGTGAGCGTGGTTGCCTCCGACGGAAGGCA
GAGGAGGTTTCTTTGGACCCTCGAGCGTCAACGACGCCCGCCGGACACAG
GGAAGTGGCTGATCTACGGGGTAGTCAGCTCAGACGTCGACGGAAAGCTG
GTGATGGAAGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16945:95..259+

>mRNA_Ecto-sp13_S_contig16945.4955.1 ID=mRNA_Ecto-sp13_S_contig16945.4955.1|Name=mRNA_Ecto-sp13_S_contig16945.4955.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16945:95..259+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTGCCCCCCTCAGGTAGTGAGCGTGGTTGCCTCCGACGGAAGGCA
GAGGAGGTTTCTTTGGACCCTCGAGCGTCAACGACGCCCGCCGGACACAG
GGAAGTGGCTGATCTACGGGGTAGTCAGCTCAGACGTCGACGGAAAGCTG
GTGATGGAAGGCTAG
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