mRNA_Ecto-sp13_S_contig16922.4946.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16922.4946.1
Unique NamemRNA_Ecto-sp13_S_contig16922.4946.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: D8LTT3_ECTSI (Eukaryotic translation initiation factor 4E-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTT3_ECTSI)

HSP 1 Score: 286 bits (731), Expect = 4.770e-97
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1
Query:    1 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAAR 405
            WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAAR
Sbjct:   30 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAAR 164          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A835ZBP0_9STRA (Eukaryotic translation initiation factor 4E-like 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP0_9STRA)

HSP 1 Score: 197 bits (501), Expect = 4.680e-62
Identity = 87/135 (64.44%), Postives = 104/135 (77.04%), Query Frame = 1
Query:    1 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAAR 405
            WG +M SL EF TVEDFW+ YNN+PKPSQV FDG  RK+VGDR I+S+SIFKKGI+PEWE P N+ GGEW  R ++ P  LD  WE++VLGL+GET+D  DEICGARVVDKS+     YRFELWLR+ +  T AR
Sbjct:   31 WGSNMTSLGEFNTVEDFWRFYNNIPKPSQVFFDGKSRKRVGDRQIESFSIFKKGIRPEWEDPANARGGEWSCRERLQPIVLDTLWESLVLGLIGETIDWADEICGARVVDKSRGKDTYYRFELWLRAREPGTTAR 165          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: R1BIV2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIV2_EMIHU)

HSP 1 Score: 169 bits (427), Expect = 6.580e-51
Identity = 73/127 (57.48%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    7 DSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSND 387
            D+M  L E ATVEDFW+ +NN+PKPS++ +DG  RKK   R ++++S+FKK IKPEWE P N  G EW  R   T   LD FW ++VLG++GET+D GDEICGARVVDKS N   +YR ELW R ND
Sbjct:   30 DNMAKLCEVATVEDFWRAWNNIPKPSEIFYDGRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRRAFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKND 156          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A7S2XVT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT5_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.410e-48
Identity = 70/129 (54.26%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSND 387
            W  +MQ +  FATVEDFW  YN++PKPS + +DG  RK+VGDR ++S SIFK+GI PEWE P N+ GGE+  R    P  LD  WEN+++G++GET+D  D I GARVVDKSK    VY+ ELW++S +
Sbjct:   29 WAGNMQKICTFATVEDFWAYYNHIPKPSAIFYDGQTRKRVGDRQLESLSIFKEGINPEWEDPVNAKGGEFSCRKTFDPVTLDKLWENLLMGIIGETIDWADHISGARVVDKSKGTRAVYKLELWVKSKE 157          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A7S2CNW6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CNW6_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 3.390e-48
Identity = 69/131 (52.67%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    7 DSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTA 399
            D+M+ L E AT+EDFW+ +NN+PKPS + +DG  RKK  +R ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW ++VLG++GET+D  D+ICGARVVDKS     +YR ELW +  D   A
Sbjct:   40 DNMEKLCEVATIEDFWRAFNNIPKPSAIFYDGRTRKKFANRSVESFSLFKKNIKPEWEDPMNRSGAEWFCRKTFASQQLDEFWRDLVLGMIGETIDPADDICGARVVDKSSGTRQMYRLELWFKRKDDAVA 170          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A7S3EX75_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EX75_9EUKA)

HSP 1 Score: 162 bits (410), Expect = 4.310e-48
Identity = 71/131 (54.20%), Postives = 90/131 (68.70%), Query Frame = 1
Query:    7 DSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTA 399
            D+M+ L E ATVEDFW  +NN+PKPSQ+ FDG  +K+  +R ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW+N+ LG++GET+D GDEICGARVVDK      +YR ELW +  D   A
Sbjct:   48 DNMEKLCEMATVEDFWCAWNNIPKPSQIFFDGKTKKRFANRSVESFSLFKKNIKPEWEDPANRAGAEWFCRRNFPMQQLDDFWQNLALGMIGETIDHGDEICGARVVDKCAGGRCMYRLELWFKKKDQGIA 178          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A7S0HHF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHF8_9EUKA)

HSP 1 Score: 163 bits (413), Expect = 4.490e-48
Identity = 71/131 (54.20%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    7 DSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTA 399
            D+M  L EFAT+EDFW+++NN+PKPS + +DG  +KK  DR ++S+S+FKKG+KPEWE   N  G EW  R       LD FW+++VLG+VGET+D  DEICGARVVDKS     +YR ELW R  D   A
Sbjct:   85 DNMAKLCEFATIEDFWRLWNNIPKPSAIFYDGRTKKKFKDRTVESFSLFKKGVKPEWEDAANRTGAEWFCRKTFPMPQLDSFWQDLVLGMVGETIDPADEICGARVVDKSSGTRCMYRLELWFRKKDETIA 215          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A5D6YGR4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YGR4_9STRA)

HSP 1 Score: 162 bits (409), Expect = 4.950e-48
Identity = 71/138 (51.45%), Postives = 97/138 (70.29%), Query Frame = 1
Query:    1 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNH-----NVYRFELWLRSNDGNTA 399
            + D +  L  F TVE+FW  +NN+PKPSQV+FDG  +KK  DR ++S+++FK+GI PEWE PEN  GGEW  R ++ P+ALD +W+ +VLG +GET+D GDEI G RV+ K+K +      N YRFE+WLR+ D   A
Sbjct:   29 YADKLFKLCTFRTVEEFWSYWNNIPKPSQVLFDGFTKKKFADRTVESFAVFKEGITPEWEDPENKRGGEWSIRQEIGPEALDEYWDKLVLGAIGETIDPGDEITGVRVIHKNKRDKKNETGNNYRFEIWLRTPDRGRA 166          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: K3WHW2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHW2_GLOUD)

HSP 1 Score: 159 bits (402), Expect = 5.540e-47
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 1
Query:    1 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNH----NVYRFELWLRSND 387
            +GD +  L  F TVE+FW  +NN+PKPSQV+FDG  +KK  DR ++S+++FK GI PEWE PEN  GGEW  R ++  +ALD FW+ +VLG +GET+D G+EI G RV+ K+K +     N YRFE+WLR+ D
Sbjct:   29 YGDKLFKLCSFRTVEEFWAYWNNIPKPSQVLFDGFTKKKFADRTVESFAVFKDGITPEWEDPENKRGGEWSIRKEIGSEALDEFWDKLVLGAIGETIDPGNEITGVRVIHKNKRDKKEPGNNYRFEIWLRTLD 161          
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Match: A0A6G0XM37_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XM37_9STRA)

HSP 1 Score: 158 bits (400), Expect = 9.290e-47
Identity = 70/133 (52.63%), Postives = 93/133 (69.92%), Query Frame = 1
Query:    1 WGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTA 399
            + D++  L  F TVE+FW  +NN+PKPSQV+FDG  +KK  DR + S+ +FK GI+PEWE P N  GGEWQ   K+    LD  W+ +VLG++GET+D  +EI GARV+ K+K + + YRFELWLRS D N A
Sbjct:   25 YADNLHKLCTFGTVEEFWSYWNNIPKPSQVLFDGISKKKFVDRAVQSFCVFKDGIRPEWEDPVNITGGEWQISLKLQAAELDETWDKLVLGMIGETIDPDNEITGARVIHKNKKDTHAYRFELWLRSRDRNLA 157          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16922.4946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT3_ECTSI4.770e-97100.00Eukaryotic translation initiation factor 4E-like 1... [more]
A0A835ZBP0_9STRA4.680e-6264.44Eukaryotic translation initiation factor 4E-like 1... [more]
R1BIV2_EMIHU6.580e-5157.48Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2XVT5_9STRA1.410e-4854.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CNW6_9EUKA3.390e-4852.67Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3EX75_9EUKA4.310e-4854.20Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A7S0HHF8_9EUKA4.490e-4854.20Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A5D6YGR4_9STRA4.950e-4851.45Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WHW2_GLOUD5.540e-4752.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A6G0XM37_9STRA9.290e-4752.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16922contigEcto-sp13_S_contig16922:509..2609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score277.3
Seed ortholog evalue3.6e-72
Seed eggNOG ortholog2880.D8LTT3
Model size408
KEGG rclassRC00005,RC00059
KEGG koko:K03259,ko:K03715,ko:K07521
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04360,ko04910,map00561,map01100,map01521,map03013,map04066,map04150,map04151,map04211,map04360,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000278,GO:0000339,GO:0000340,GO:0000932,GO:0001662,GO:0002209,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0007275,GO:0007346,GO:0007399,GO:0007610,GO:0008134,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010721,GO:0014070,GO:0016281,GO:0016442,GO:0017148,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0031369,GO:0031370,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033391,GO:0033555,GO:0033993,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0042596,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0045931,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051384,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070491,GO:0070887,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0080090,GO:0097159,GO:0097327,GO:0098727,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903047,GO:1990904,GO:2000026,GO:2000112,GO:2000113
Exons3
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1670@2759
EC2.4.1.46
Cds size396
COG Functional cat.J
CAZyGT28
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012,ko03019,ko04516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.7895434-UTR-Ecto-sp13_S_contig16922:508..5201681462886.7895434-UTR-Ecto-sp13_S_contig16922:508..520Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16922 509..520 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.8090591-CDS-Ecto-sp13_S_contig16922:520..5951681462886.8090591-CDS-Ecto-sp13_S_contig16922:520..595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16922 521..595 +
1681462886.8220677-CDS-Ecto-sp13_S_contig16922:1484..16521681462886.8220677-CDS-Ecto-sp13_S_contig16922:1484..1652Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16922 1485..1652 +
1681462886.8326948-CDS-Ecto-sp13_S_contig16922:2456..26091681462886.8326948-CDS-Ecto-sp13_S_contig16922:2456..2609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16922 2457..2609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16922.4946.1prot_Ecto-sp13_S_contig16922.4946.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16922 521..2609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16922.4946.1

>prot_Ecto-sp13_S_contig16922.4946.1 ID=prot_Ecto-sp13_S_contig16922.4946.1|Name=mRNA_Ecto-sp13_S_contig16922.4946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
MQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKG
IKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEIC
GARVVDKSKNNHNVYRFELWLRSNDGNTAAR*
back to top

mRNA from alignment at Ecto-sp13_S_contig16922:509..2609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16922.4946.1 ID=mRNA_Ecto-sp13_S_contig16922.4946.1|Name=mRNA_Ecto-sp13_S_contig16922.4946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2101bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16922:509..2609+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGGAGACAGCATGCAGAGCCTTGCGGAGTTCGCGACCGTGGAGGATTT TTGGAAGGTGTACAACAATGTCCCCAAGCCCAGCCAGGTGAGCGCAGGCT TGACTCCAGCACACGCAGGCACCGCTGCGAGGCTCAGCACGCAGGTACCG TCCGTACATGCCTCTCCGCAAGGCCTGCTGGAGATCAGTGGCGTTCAAGG TCCCATGTGCACTTGGGCTGCCTAAGTTAGGTACCCACCTAAGCCCCCGC CCCAGATTTAGTCTGTAGCCTAGACAGCAGGCCTTTTGGGCCAATGAAAC TCGGGCATACGCGAGGAGGCTGCACACGAGGGTGCACCCAATTTTCGACA AGCTCCTAATCGGGCGGGTTTCCCTATTGATGGAGGGGGGGCACACAGAT ATTGCCACTCTTTTGGAATACGGTGACATTCGTCCATACGGGACTCCCTA TACCAAATCCTATTCAATCCCTTGTGGGCTTTTCCAATTGGGGGAAATTA CGAGCCAAGCCCCAGTCAAAATGATATTTGCTTCGTGATATCACGTTGCG CAGCGACAGATACCGCTCCTCTGAGAGTTTTTAGTGTCTTCCAGTGACGA GATGGTTGGCGGAGGCAGGCGACGAGACAAGCTAGAACGCGCTGCAATTT GTGAATAAAATGACAAACATGCGCCAGGAGTTCATGATCCTATCAAGAGG AAAGACGGCAACTGTAACTCGCCGTCTCGAAATCGGGTCGTGATCGATCG TCATAGAAATCGCTCGGACAACAGACATGAACCCGTCCCTCCACGCAACT CCCAGGATGAAAAAGGAAGCATCTGAGCCACCTTTGGCAACGTAGGAAAG AACGATTGGTCGTCAGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCT CGAGGACGCGCAGTCAAATGCCTAACCGCGAAAGCACGCAAAAAATGAGT ACGCCCCCCACCCCCCCACTCGGCAGGTAATGTTTGACGGGTCGATGCGG AAGAAGGTCGGAGACCGAGTGATCGACTCGTACAGCATCTTCAAGAAGGG CATCAAGCCCGAGTGGGAGGCTCCGGAGAACAGCCACGGGGGGGAGTGGC AAAGCCGGAGCAAGATGACCCCCCAGGCGCTCGACCTATTCTGGGTGAGG CCTCCGCTACGGTCGATGGGGAACGAGGGTGTCTTTCAAATCGGTTGCAC CAATCTTTCGTACCGTTCTTGTTCATGTTGTTTGTGTCTATCGGTTGTGT TTGTGTATACTTTGAAGTGAATTTGTGAACACTGGTTACCCTCGTGGTAG CTTGCGGATTCGAGGTGAAGTTTTGCCGACGAATACAGACCACGTGGGTT ACTTATTGCCCATGACATGCGTTTGTTGGTCGGTCGGTAGATTTTTCGTG GGCACATTAATTTTGTTGCTTGGCCCCTCTGTTCTCAATGAACCCTCGCC CGGAGGTGACGTGCATATTGTGTCTTATTCCCTCCTCCCTCGTGTTTGTC CATGAAGTATCGTCCCGAGTCTGGCAGTCATAATGAGGTGCCAATTATTT GGAAGCAATCTGGTCGAATTTGTTGTGTTGAATGCCGGTGCTTGATTCTT GCCGGAGCTGAATGAGTGTGCTCTCGTGAAACATGCCTTTTTTTATTTTT TTGAGAGTTGTTTGTATTGTGCAGGAGACAGAACTCGGGCCGAGTTTAAG AAACCTGGAACTGTGTCGTGGCTCATTGGAATACGTGTTCGTGTGTACAT GACTCCATCTACCGTTAACATCGTTTTTGGCCGTTTACCTTTGACGTTTT TGTTGGTTGCAGGGGAAGAGAGCACATCGCTTTCGTCAATGCATGCCGTC TGCGGCACCTTGATTGTTCCGCCATTCGCTCATGGACGCGCAACTCCTTT CTCCCTCTCTGTGCATGATATCGTCCCGCTCGTGGTGTGTACGTGCAGGA GAACATGGTGTTGGGGCTGGTGGGGGAAACGGTCGACGTCGGGGACGAGA TCTGTGGAGCAAGGGTGGTGGACAAGAGCAAGAACAACCACAACGTCTAC CGTTTCGAGTTGTGGCTGAGGAGTAACGACGGCAATACCGCGGCCAGGTG A
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16922:509..2609+

>mRNA_Ecto-sp13_S_contig16922.4946.1 ID=mRNA_Ecto-sp13_S_contig16922.4946.1|Name=mRNA_Ecto-sp13_S_contig16922.4946.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16922:509..2609+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCCTTGCGGAGTTCGCGACCGTGGAGGATTTTTGGAAGGTGTA
CAACAATGTCCCCAAGCCCAGCCAGGTAATGTTTGACGGGTCGATGCGGA
AGAAGGTCGGAGACCGAGTGATCGACTCGTACAGCATCTTCAAGAAGGGC
ATCAAGCCCGAGTGGGAGGCTCCGGAGAACAGCCACGGGGGGGAGTGGCA
AAGCCGGAGCAAGATGACCCCCCAGGCGCTCGACCTATTCTGGGAGAACA
TGGTGTTGGGGCTGGTGGGGGAAACGGTCGACGTCGGGGACGAGATCTGT
GGAGCAAGGGTGGTGGACAAGAGCAAGAACAACCACAACGTCTACCGTTT
CGAGTTGTGGCTGAGGAGTAACGACGGCAATACCGCGGCCAGGTGA
back to top