mRNA_Ecto-sp13_S_contig1691.4940.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1691.4940.1
Unique NamemRNA_Ecto-sp13_S_contig1691.4940.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1691.4940.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.590e-15
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = -2 
Query:    1 EQMELLLPEILPGAVTRTSETSSTPKEVMVRSPPALAPTHDSRLPSMAEIAALQS 165
            ++ME LL EILPGA  RTSETSSTPK+V+VRSPPALAPTHD RLPSMA+IAALQ+
Sbjct:  714 QKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQA 768
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BLAST of mRNA_Ecto-sp13_S_contig1691.4940.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.120e-12
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = -2 
Query:    1 EQMELLLPEILPGAVTRTSETSSTPKEVMVRSPPALAPTHDSRLPSMAEIAALQS 165
            ++MELLL EILP A  RTSETS +PKEV+V+SPPALAPTH+  LPSMA+IAALQ+
Sbjct:  754 QKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSMADIAALQA 808
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BLAST of mRNA_Ecto-sp13_S_contig1691.4940.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.060e-6
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = -2 
Query:    1 EQMELLLPEILPGAVTRTSETSSTPKEVMVRSPPALAPTHDSRLPSMAEIAALQS 165
            +++++LL EILP A  + + T  TPKEVMVRSPPA A  HDS LPS AE AA+Q+
Sbjct:  439 QKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQA 493
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BLAST of mRNA_Ecto-sp13_S_contig1691.4940.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.110e-6
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = -2 
Query:    1 EQMELLLPEILPGAVTRTSETSSTPKEVMVRSPPALAPTHDSRLPSMAEIAALQS 165
            +++++LL EILP A  + + T  TPKEVMVRSPPA A  HDS LPS AE AA+Q+
Sbjct:  634 QKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQA 688
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BLAST of mRNA_Ecto-sp13_S_contig1691.4940.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 5.090e-6
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = -2 
Query:    1 EQMELLLPEILPGAVTRTSETSSTPKEVMVRSPPALAPTHDSRLPSMAEIAALQS 165
            +++E+L+ +ILP A T  + T STPKEV+VRSPP + P HD  LPS AE  A+Q+
Sbjct:  681 QKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQA 735
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1691.4940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KZF6_9PHAE2.590e-1580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI4.120e-1272.73Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
D7G1L2_ECTSI1.060e-658.18Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI1.110e-658.18Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FH90_ECTSI5.090e-652.73Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1691contigEcto-sp13_S_contig1691:3858..4392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size535
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.1182258-UTR-Ecto-sp13_S_contig1691:3857..40271681462886.1182258-UTR-Ecto-sp13_S_contig1691:3857..4027Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1691 3858..4027 +
1681462886.1371467-UTR-Ecto-sp13_S_contig1691:4333..43921681462886.1371467-UTR-Ecto-sp13_S_contig1691:4333..4392Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1691 4334..4392 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.12729-CDS-Ecto-sp13_S_contig1691:4027..43331681462886.12729-CDS-Ecto-sp13_S_contig1691:4027..4333Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1691 4028..4333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1691.4940.1prot_Ecto-sp13_S_contig1691.4940.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1691 4028..4333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1691.4940.1

>prot_Ecto-sp13_S_contig1691.4940.1 ID=prot_Ecto-sp13_S_contig1691.4940.1|Name=mRNA_Ecto-sp13_S_contig1691.4940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MKKTDSMSKTRQEGRPVSRRCLNFPSHHSTSVLIPCTLLEKRKPTPLRTS
LSMLPSRAYPRSAVPVSPKSATRRAKRSQAQDNWQSKLCLVHTRYLLFNA
A*
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mRNA from alignment at Ecto-sp13_S_contig1691:3858..4392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1691.4940.1 ID=mRNA_Ecto-sp13_S_contig1691.4940.1|Name=mRNA_Ecto-sp13_S_contig1691.4940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1691:3858..4392+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTTGCAAGGCGGCAATCTCTGCCATTGAGGGCAATCTGCTGTCGTGGG
TGGGCGCCAAAGCAGGAGGAGATCGGACCATCACTTCCTTGGGCGTGCTC
GACGTTTCCGACGTTCTAGTGACTGCCCCGGGAAGAATCTCCGGTAGGAG
GAGCTCCATCTGCTCGCAGCATGAAGAAAACGGATAGCATGTCCAAGACG
AGACAAGAGGGTCGACCTGTCTCACGGAGGTGCTTAAATTTCCCCTCCCA
TCACAGCACATCTGTACTAATACCGTGTACCCTACTCGAGAAAAGAAAAC
CTACACCCCTAAGGACCTCATTGTCAATGTTACCTTCCCGTGCATACCCT
CGCTCGGCGGTTCCCGTCAGCCCCAAAAGCGCTACTAGACGGGCCAAGCG
CTCGCAGGCTCAAGACAACTGGCAATCTAAATTGTGCCTGGTGCACACGC
GATACCTTTTGTTCAATGCCGCTTGAGCCGTCAAGGCAACCTCGCTGAAT
CGCCTTCAAAAGTTTTCGAAGGTGCTTCTTGCCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1691:3858..4392+

>mRNA_Ecto-sp13_S_contig1691.4940.1 ID=mRNA_Ecto-sp13_S_contig1691.4940.1|Name=mRNA_Ecto-sp13_S_contig1691.4940.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1691:3858..4392+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAAACGGATAGCATGTCCAAGACGAGACAAGAGGGTCGACCTGT
CTCACGGAGGTGCTTAAATTTCCCCTCCCATCACAGCACATCTGTACTAA
TACCGTGTACCCTACTCGAGAAAAGAAAACCTACACCCCTAAGGACCTCA
TTGTCAATGTTACCTTCCCGTGCATACCCTCGCTCGGCGGTTCCCGTCAG
CCCCAAAAGCGCTACTAGACGGGCCAAGCGCTCGCAGGCTCAAGACAACT
GGCAATCTAAATTGTGCCTGGTGCACACGCGATACCTTTTGTTCAATGCC
GCTTGA
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