mRNA_Ecto-sp13_S_contig16905.4937.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16905.4937.1
Unique NamemRNA_Ecto-sp13_S_contig16905.4937.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16905.4937.1 vs. uniprot
Match: A0A6H5KQ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ13_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 6.640e-54
Identity = 322/505 (63.76%), Postives = 323/505 (63.96%), Query Frame = 1 
Query:   16 GGLGTLLYAGMRSHEKVSPHIPSSSPFVPTAWRDRVSGGXXXXXXXXXXXXXXXXLSPGPSASSAPPSSTPASRALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KARKLLGRAPKVPPGQLRGGRGGAAPAPLAPAPPATGGGRFAGRPPPPSFIXXXXXXXXXXXXXXXXSFPPSPFTATAAAPLLGTPSALFAHPRLPSGAXXXXXXXXFVPLPSAPSSAPPPLPSALLGPPRRPPPKIDETTAAEIRKLRTSNVLANSHRKNFVEDDDLEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----PLPTAAXXXGGAQEDAGTRRAGGGXXXXDAGWKEVGXXXXXXXSPARPILAQPWLPMPVMVSAGAPRTSALDPSAVSNIAFDDESGGRA 1515
            GGLGTLLYAGMRSHEKVSPHIPSSSPFVPTAWRDRVSGG XXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           KARKLLGRAPKVPPG LRGGR G APAPLAPAPPA GGGRFA   PPPSFIXXXXXXXXXXXXXXXX      FTATAAAPLLGTPSA FAHPRLPSGA                                RPP  +                    HRKNFVEDDDLEV    XXXXXXXXXXXXXXXXXXXXXX             XXXXXXXXXXXXXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXX                   PLPTAAXXXGG QEDAG RRAGG      AG            SPARPILAQPWLPMPV VSAGAPRTSALDPSAVSNIAFDDESG RA
Sbjct:  147 GGLGTLLYAGMRSHEKVSPHIPSSSPFVPTAWRDRVSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSKASPVVSGKARKLLGRAPKVPPGPLRGGRVGTAPAPLAPAPPAMGGGRFAA--PPPSFIXXXXXXXXXXXXXXXXXXXXXXFTATAAAPLLGTPSAPFAHPRLPSGA--------------------------------RPPFGM------------------MPHRKNFVEDDDLEVDVEGXXXXXXXXXXXXXXXXXXXXXXAEEGGTPVPTAATXXXXXXXXXXXXXXXXXXXXXXXXXXAATLSLPTEAGPSLRVGNDHGGXXXXXXXXXXXXXXXXXXXFSLDTPSRARSSRGEGKDMPLPTAAXXXGGTQEDAGRRRAGG---AGGAG------------SPARPILAQPWLPMPV-VSAGAPRTSALDPSAVSNIAFDDESGDRA 583
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BLAST of mRNA_Ecto-sp13_S_contig16905.4937.1 vs. uniprot
Match: D7FT38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT38_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 6.450e-16
Identity = 291/500 (58.20%), Postives = 292/500 (58.40%), Query Frame = 1 
Query:   19 GLGTLLYAGMRSHEKVSPHIPSSSPFVPTAWRDRVSGGXXXXXXXXXXXXXXXXLSPGPSASSAPPSSTP-ASRALTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARKLLGRAPKVPPGQLRGGRGGAAPAPLAPAPPATGGGRFAGRPPPPSFIXXXXXXXXXXXXXXXXSFPPSPFTATAAAPLLGTPSALFAHPRLPSGAXXXXXXXXFVPLPSAPSSAPPPLPSALLGPPRRPPPKIDETTAAEIRKLRTSNVLANSHRKNFVEDDDLEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLPTAAXXXGGAQEDAGTRRAGGGXXXXDAGWKEVGXXXXXXXSPARPILAQPWLPMPVMVSAGAPRTSALDPSAVSNIAFDDESGGRA 1515
            GLGTLLYAGMRSHEKVSPHIPSSS FVPTAWRDRVSG XXXXXXXXXXXXXXXX                 AS AL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        KARKLLGRA K                                                                                                                             IDE TAAEIRKLRTSNVLANSHRKNFVEDDDLEV              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       AXXXG         RAG                     SPARPILAQPWLPMPV VS+GAPRTSALDPSAVSNIAFDDESGGRA
Sbjct:  238 GLGTLLYAGMRSHEKVSPHIPSSSAFVPTAWRDRVSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASHALAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASPVVSGKARKLLGRASK-----------------------------------------------------------------------------------------------------------------------------IDEATAAEIRKLRTSNVLANSHRKNFVEDDDLEVDVEGGDDEIEARQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------AXXXG---------RAG---------------------SPARPILAQPWLPMPV-VSSGAPRTSALDPSAVSNIAFDDESGGRA 574
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16905.4937.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQ13_9PHAE6.640e-5463.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT38_ECTSI6.450e-1658.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16905contigEcto-sp13_S_contig16905:1439..3804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2204
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_002710.1
Cds size1473
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462885.9940903-UTR-Ecto-sp13_S_contig16905:1438..20381681462885.9940903-UTR-Ecto-sp13_S_contig16905:1438..2038Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16905 1439..2038 -
1681462886.0030124-UTR-Ecto-sp13_S_contig16905:2200..22861681462886.0030124-UTR-Ecto-sp13_S_contig16905:2200..2286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16905 2201..2286 -
1681462886.0257397-UTR-Ecto-sp13_S_contig16905:3759..38041681462886.0257397-UTR-Ecto-sp13_S_contig16905:3759..3804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16905 3760..3804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462886.013248-CDS-Ecto-sp13_S_contig16905:2286..37591681462886.013248-CDS-Ecto-sp13_S_contig16905:2286..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16905 2287..3759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16905.4937.1prot_Ecto-sp13_S_contig16905.4937.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16905 2287..3759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16905.4937.1

>prot_Ecto-sp13_S_contig16905.4937.1 ID=prot_Ecto-sp13_S_contig16905.4937.1|Name=mRNA_Ecto-sp13_S_contig16905.4937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=491bp
MRSHEKVSPHIPSSSPFVPTAWRDRVSGGGGGSGEGGGSGAAAATLSPGP
SASSAPPSSTPASRALTSSSPPDATPSSMRPRPAKPSTPAPAVAAAAAAA
GSKASPVVSGKARKLLGRAPKVPPGQLRGGRGGAAPAPLAPAPPATGGGR
FAGRPPPPSFIPPFFHPPFGLSPYGLASFPPSPFTATAAAPLLGTPSALF
AHPRLPSGAHPPFGMMPFVPLPSAPSSAPPPLPSALLGPPRRPPPKIDET
TAAEIRKLRTSNVLANSHRKNFVEDDDLEVDVEGDDDETEDRQAAAAGAG
AGAGAGAEEGGTPVPTAGTTLPAPPRPPPPTRTPSQLPPPTRTTTAATLP
LPGGAGPSLRVSNDHGGGGGGGSSEDEDDDDDFSLDTPSRTRSRRGEGKG
MPLPTAAAAAGGAQEDAGTRRAGGGXXXXDAGWKEVGGGGGGGGSPARPI
LAQPWLPMPVMVSAGAPRTSALDPSAVSNIAFDDESGGRA*
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mRNA from alignment at Ecto-sp13_S_contig16905:1439..3804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16905.4937.1 ID=mRNA_Ecto-sp13_S_contig16905.4937.1|Name=mRNA_Ecto-sp13_S_contig16905.4937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16905:1439..3804- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGCGGCGGCGACGGCGGGTTGGGAACGCTTCTGTACGCGGGTATGCG
CAGCCACGAGAAGGTTTCGCCGCACATTCCGAGCAGCTCCCCGTTCGTGC
CGACGGCCTGGAGGGACCGCGTGAGCGGCGGCGGCGGCGGCAGTGGCGAG
GGCGGCGGGAGCGGAGCCGCCGCGGCCACCCTTTCCCCCGGCCCGTCTGC
TTCCTCCGCTCCTCCTTCCTCTACGCCGGCCTCTCGCGCCTTGACTTCTT
CTTCTCCGCCCGACGCAACGCCGTCTTCAATGCGGCCGCGACCAGCGAAG
CCGTCTACGCCGGCACCGGCTGTGGCGGCGGCGGCGGCGGCGGCGGGGAG
CAAGGCGTCGCCGGTCGTCAGCGGGAAGGCCAGGAAGCTGCTGGGCCGAG
CGCCGAAGGTACCGCCAGGCCAGCTCCGCGGCGGCCGCGGCGGCGCGGCT
CCGGCGCCGCTAGCTCCGGCCCCGCCAGCGACGGGCGGCGGACGTTTCGC
CGGCCGTCCTCCTCCTCCTTCGTTCATCCCTCCGTTCTTCCACCCACCGT
TCGGTCTCTCGCCGTACGGGCTGGCCTCCTTTCCCCCAAGCCCGTTCACG
GCGACCGCAGCGGCCCCTCTTCTCGGAACCCCTTCCGCTCTCTTTGCCCA
CCCCCGTCTTCCCTCTGGCGCCCATCCTCCGTTCGGCATGATGCCGTTCG
TTCCCCTTCCCAGCGCTCCTTCTTCGGCACCCCCCCCCCTTCCCTCCGCG
CTTCTGGGACCACCACGGCGCCCCCCCCCCAAGATCGACGAGACCACAGC
GGCGGAGATTCGCAAGTTGCGGACGTCCAACGTGTTGGCGAACAGCCACC
GGAAGAACTTCGTCGAAGACGACGATTTGGAGGTTGACGTGGAGGGGGAT
GACGATGAAACCGAGGACAGACAAGCAGCAGCTGCGGGAGCGGGAGCGGG
AGCGGGAGCCGGAGCGGAGGAGGGAGGAACGCCGGTGCCGACGGCTGGAA
CGACGCTACCGGCGCCACCACGACCACCACCTCCGACGAGGACTCCATCA
CAGCTACCACCTCCGACAAGAACGACAACGGCGGCGACGCTTCCACTTCC
GGGGGGTGCGGGGCCGTCCCTTCGAGTGAGCAACGATCACGGTGGCGGGG
GCGGCGGTGGAAGCAGCGAAGACGAAGACGACGACGACGACTTTTCTCTC
GACACGCCGTCGCGGACACGAAGCCGTCGGGGAGAGGGGAAGGGCATGCC
CTTGCCAACAGCCGCAGCGGCAGCAGGCGGGGCACAGGAAGACGCAGGAA
CGAGACGAGCAGGAGGGGGTGNNNNNNNNNNAGACGCAGGATGGAAAGAG
GTGGGGGGGGGGGGGGGGGGGGGGGGAAGCCCCGCGAGGCCGATTCTCGC
CCAGCCGTGGCTGCCGATGCCGGTGATGGTGTCTGCGGGGGCGCCGCGGA
CGTCCGCGTTGGACCCGTCGGCCGTATCCAACATTGCCTTCGACGACGAA
AGTGGTGGCCGTGCGTAACAGCCTCCGTCTTCTCCCGGCACCTCGTGTGC
TTCTGCCGGGGTGCTTGTGTCCTTGTTGTAAGCATGGACCGCGCTAGTGT
GTGTGCATGTGTTGTGGTTGGATCTCTCTGGGTGCCTGTTTTTTTGCGTC
GAACGCTCTTCTCTTAAGGGCGTTGCGCGGTCTGCCAACCAGTACGTGTT
GACCACTGCGATGACCACAGCGATGTTCAATGTGCTTCGGTGCGTGATTT
GTGAGAGTACTAAGAGGGGGGACCTCCCTTCCCCGTTCAGTGCGCGCTTC
TACCCGCCGAGGAGGTTTCGGATTTTTGCGTCGTTTTTGTTTCGCGCTCC
GTCTTTTTATTTGTGGTGGGTGACGACGACGCAATGCCAAAAAACGGCAC
AAACAAACGTCGTCCCGTGCGTGACGTAATTAGAAGGGCGTGTGCTGTTT
TGTGAACACCTGATTCCTGCGGCTTCCAGATTTGTGTGCAATTTTAATGA
GCTTGCATTTTTTGTCATGAATTTTCATGTTCTTCGTGTCTACGGCGGTT
GTTGGTCAAGAAGGACTCGCCCACGTGTCCGAACGTGGTCTTGTATGCTG
TTTTGTTTCGGTTTTTGTTGTCGCAACCGGGCGGAAATACTGGGGGGGGT
CGTTCAGGTCGTCGTGTGTTGCACGCAATCTGTTCACCCATTCGCTCCAG
GAGTCACCCCCCTGACAAGAATACAATAACTCGTACTTGGTGGATATGTC
GTGTCTACGGGTGTTTTGAGTTTGTTGGTGTAGAGTCTTCCGAACCCGTG
CACATCGTCTGTAAGTGATCAGACTCTTGGAGCTGCCGGTTGGTGTTGGC
TTGTCCTGAAGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16905:1439..3804-

>mRNA_Ecto-sp13_S_contig16905.4937.1 ID=mRNA_Ecto-sp13_S_contig16905.4937.1|Name=mRNA_Ecto-sp13_S_contig16905.4937.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1473bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16905:1439..3804- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCAGCCACGAGAAGGTTTCGCCGCACATTCCGAGCAGCTCCCCGTT
CGTGCCGACGGCCTGGAGGGACCGCGTGAGCGGCGGCGGCGGCGGCAGTG
GCGAGGGCGGCGGGAGCGGAGCCGCCGCGGCCACCCTTTCCCCCGGCCCG
TCTGCTTCCTCCGCTCCTCCTTCCTCTACGCCGGCCTCTCGCGCCTTGAC
TTCTTCTTCTCCGCCCGACGCAACGCCGTCTTCAATGCGGCCGCGACCAG
CGAAGCCGTCTACGCCGGCACCGGCTGTGGCGGCGGCGGCGGCGGCGGCG
GGGAGCAAGGCGTCGCCGGTCGTCAGCGGGAAGGCCAGGAAGCTGCTGGG
CCGAGCGCCGAAGGTACCGCCAGGCCAGCTCCGCGGCGGCCGCGGCGGCG
CGGCTCCGGCGCCGCTAGCTCCGGCCCCGCCAGCGACGGGCGGCGGACGT
TTCGCCGGCCGTCCTCCTCCTCCTTCGTTCATCCCTCCGTTCTTCCACCC
ACCGTTCGGTCTCTCGCCGTACGGGCTGGCCTCCTTTCCCCCAAGCCCGT
TCACGGCGACCGCAGCGGCCCCTCTTCTCGGAACCCCTTCCGCTCTCTTT
GCCCACCCCCGTCTTCCCTCTGGCGCCCATCCTCCGTTCGGCATGATGCC
GTTCGTTCCCCTTCCCAGCGCTCCTTCTTCGGCACCCCCCCCCCTTCCCT
CCGCGCTTCTGGGACCACCACGGCGCCCCCCCCCCAAGATCGACGAGACC
ACAGCGGCGGAGATTCGCAAGTTGCGGACGTCCAACGTGTTGGCGAACAG
CCACCGGAAGAACTTCGTCGAAGACGACGATTTGGAGGTTGACGTGGAGG
GGGATGACGATGAAACCGAGGACAGACAAGCAGCAGCTGCGGGAGCGGGA
GCGGGAGCGGGAGCCGGAGCGGAGGAGGGAGGAACGCCGGTGCCGACGGC
TGGAACGACGCTACCGGCGCCACCACGACCACCACCTCCGACGAGGACTC
CATCACAGCTACCACCTCCGACAAGAACGACAACGGCGGCGACGCTTCCA
CTTCCGGGGGGTGCGGGGCCGTCCCTTCGAGTGAGCAACGATCACGGTGG
CGGGGGCGGCGGTGGAAGCAGCGAAGACGAAGACGACGACGACGACTTTT
CTCTCGACACGCCGTCGCGGACACGAAGCCGTCGGGGAGAGGGGAAGGGC
ATGCCCTTGCCAACAGCCGCAGCGGCAGCAGGCGGGGCACAGGAAGACGC
AGGAACGAGACGAGCAGGAGGGGGTGNNNNNNNNNNAGACGCAGGATGGA
AAGAGGTGGGGGGGGGGGGGGGGGGGGGGGGAAGCCCCGCGAGGCCGATT
CTCGCCCAGCCGTGGCTGCCGATGCCGGTGATGGTGTCTGCGGGGGCGCC
GCGGACGTCCGCGTTGGACCCGTCGGCCGTATCCAACATTGCCTTCGACG
ACGAAAGTGGTGGCCGTGCGTAA
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