mRNA_Ecto-sp13_S_contig16899.4928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5K3D6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D6_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.800e-28 Identity = 52/79 (65.82%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 7 STDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANEL 243
STDR +L+ALFNAT GANWK N +W TDA L QW GV VND GRVV+L LRYN L+G IP QL +LGAL L+L N+L
Sbjct: 10 STDRAALVALFNATGGANWKKNTKWNTDAPLGQWYGVEVNDAGRVVKLSLRYNNLKGHIPRQLGDLGALMTLNLGVNKL 88
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 108 bits (271), Expect = 7.470e-26 Identity = 52/71 (73.24%), Postives = 59/71 (83.10%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGAL 213
MASTDRD L+AL+NAT+GANW+N+ WGTDADLSQW GV VN QGRVV LDL +N LRG IPP+L NL AL
Sbjct: 1 MASTDRDVLVALYNATEGANWQNSINWGTDADLSQWFGVTVNHQGRVVRLDLSFNNLRGHIPPELGNLAAL 71
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5K8T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T5_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 6.440e-24 Identity = 48/80 (60.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 7 STDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANELI 246
STDRD+L+AL++ATDGANWK+ W TD L +W GV NDQGRVV LDL NKL G IP L +L AL L+L +N+LI
Sbjct: 110 STDRDALVALYDATDGANWKSKQNWNTDLPLGRWRGVEANDQGRVVGLDLPDNKLHGHIPSDLGHLSALQKLNLLSNQLI 189
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 100 bits (249), Expect = 7.030e-23 Identity = 49/80 (61.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANE 240
MA TDRD L+AL+NATDG NWKN W T+ADLS W+GV +DQGRVV+L L NKLRG IPPQL NL + L ++ N+
Sbjct: 1 MAPTDRDVLVALYNATDGPNWKNKTNWDTNADLSDWHGVKADDQGRVVKLSLSANKLRGSIPPQLGNL--IELKEMQFND 78
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 1.170e-22 Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLL 222
M STDR++L++LF +T GA W + W TDADL+ WNGV VN QGRVV LDL+YN L+G IPP+L L AL L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI) HSP 1 Score: 89.4 bits (220), Expect = 4.170e-21 Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLS 231
M++ DR +L+ALF +TDGANWK N+ W TDA+L+ W GV VND+GRVV+L L N L GPIP L L L L +S
Sbjct: 1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHLSMS 77
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D7FSL6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL6_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 5.350e-21 Identity = 44/76 (57.89%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDL 228
MA TDR +L+ L+ AT+G +WKNN+ W T+++LS W+GV VNDQGRVV+L L YN LRGPIPP++ +L A+ L L
Sbjct: 1 MAQTDRAALVVLYVATNGTSWKNNDNWSTESNLSLWHGVKVNDQGRVVDLSLGYNNLRGPIPPEIGDLVAMTGLYL 76
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D8LFK2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK2_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 9.770e-21 Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGAL 213
MA TDR +L+AL+NAT GA WKNN W T A LSQW+GV VN QGRVV+L L +N LRGPIP +L L L
Sbjct: 71 MAQTDRKALVALYNATGGAEWKNNQNWTTSAALSQWHGVEVNTQGRVVKLSLGWNNLRGPIPKELGALSRL 141
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.830e-20 Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNL 219
MA TDR+SL A +NATDGA W N WG+ A LS W GV NDQGRVV+L L N LRGPIP +L NL AL L
Sbjct: 35 MAQTDRESLTAFYNATDGAKWIRNTNWGSGAPLSDWYGVEANDQGRVVKLYLSSNNLRGPIPLELGNLSALQL 107
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 4.860e-20 Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 1 MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELDLRYNKLRGPIPPQLANLGALNLLDLSANEL 243
MASTDR++L+ALF +T GA W+ W TDA ++ WNGV VNDQGRVV+L L+ LRGPIPP + AL L L NEL
Sbjct: 1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIAIWNGVEVNDQGRVVKLSLKLKSLRGPIPP---GISALESLSLGYNEL 78 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16899.4928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16899.4928.1 >prot_Ecto-sp13_S_contig16899.4928.1 ID=prot_Ecto-sp13_S_contig16899.4928.1|Name=mRNA_Ecto-sp13_S_contig16899.4928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp MASTDRDSLLALFNATDGANWKNNNRWGTDADLSQWNGVGVNDQGRVVELback to top mRNA from alignment at Ecto-sp13_S_contig16899:183..1571+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16899.4928.1 ID=mRNA_Ecto-sp13_S_contig16899.4928.1|Name=mRNA_Ecto-sp13_S_contig16899.4928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1389bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16899:183..1571+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16899:183..1571+ >mRNA_Ecto-sp13_S_contig16899.4928.1 ID=mRNA_Ecto-sp13_S_contig16899.4928.1|Name=mRNA_Ecto-sp13_S_contig16899.4928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16899:183..1571+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |