mRNA_Ecto-sp13_S_contig16892.4925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16892.4925.1
Unique NamemRNA_Ecto-sp13_S_contig16892.4925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: D7FQ76_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ76_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 2.070e-51
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
Query:    1 TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKICSQDPRP 258
            TRSRVVKLGDFGIAKVLGSTFDLA+TAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKICSQDPRP
Sbjct:  140 TRSRVVKLGDFGIAKVLGSTFDLARTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKICSQDPRP 225          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: A0A835Z4W0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W0_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.640e-42
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKICSQDPRP 258
            T SRVVKLGDFGIAKVL +T D A+TAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEM  LRHAFEGN+MR LV KIC   P P
Sbjct:  140 TMSRVVKLGDFGIAKVLANTMDHARTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMAALRHAFEGNDMRQLVAKICRGQPAP 225          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: A0A7S1G592_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G592_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.560e-34
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = 1
Query:    1 TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKICSQDPRP 258
            T S +VKLGDFGIAKVL +T  LAKT+IGTPYY+SPEICQEK+YN+KSD+WSLGCVLYE+  LRH FEG NM+ LV KI     RP
Sbjct:  137 TSSNMVKLGDFGIAKVLSNTMQLAKTSIGTPYYLSPEICQEKKYNNKSDIWSLGCVLYELASLRHPFEGRNMKDLVRKIIRGVYRP 222          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: A0A7R9VJ84_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VJ84_9CHLO)

HSP 1 Score: 125 bits (314), Expect = 4.440e-34
Identity = 54/75 (72.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:   13 VVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKI 237
            ++KLGDFG++KVL STF LA TA+GTPYY+SPEICQ K+YN KSD+WSLGC+LYEMT L+HAFE  NMR+L+ KI
Sbjct:   41 LLKLGDFGVSKVLSSTFQLAATAVGTPYYLSPEICQNKKYNQKSDIWSLGCILYEMTTLKHAFEAQNMRMLLQKI 115          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: UPI000C03DB2D (serine/threonine-protein kinase Nek5-like n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C03DB2D)

HSP 1 Score: 121 bits (303), Expect = 1.380e-33
Identity = 54/79 (68.35%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKI 237
            T++ +VKLGDFGIA+VL ST +LA+T IGTPYY+SPEIC+ K YN+KSD+WSLGCVLYE+  L+HAFE  NM+ LV+KI
Sbjct:   40 TKNGIVKLGDFGIARVLHSTMELARTCIGTPYYLSPEICENKPYNNKSDIWSLGCVLYELLTLKHAFEAGNMKNLVLKI 118          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: A0A452EYV0_CAPHI (NIMA related kinase 5 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A452EYV0_CAPHI)

HSP 1 Score: 123 bits (309), Expect = 2.450e-33
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   13 VVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKIC 240
            V KLGDFGIA+VL +T +LA+T IGTPYY+SPEICQ K YN+K+D+WSLGCVLYE+  LRH FEGNN++ LV+KIC
Sbjct:   63 VAKLGDFGIARVLNNTMELARTCIGTPYYLSPEICQNKPYNNKTDIWSLGCVLYELCTLRHPFEGNNLQQLVLKIC 138          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: D8U9H8_VOLCA (Protein kinase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U9H8_VOLCA)

HSP 1 Score: 122 bits (307), Expect = 2.780e-33
Identity = 56/84 (66.67%), Postives = 68/84 (80.95%), Query Frame = 1
Query:   13 VVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKIC--SQDPRP 258
            ++KLGDFG++KVL STF LA TA+GTPYY+SPEICQ ++YN KSD+WSLGCVLYE+  L+HAFEG NMR L+ KI   S  P P
Sbjct:   69 LLKLGDFGVSKVLNSTFQLATTAVGTPYYLSPEICQNRKYNQKSDIWSLGCVLYELATLKHAFEGPNMRALISKIIKGSYTPMP 152          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: A0A7S0PHH9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PHH9_CAFRO)

HSP 1 Score: 125 bits (313), Expect = 3.480e-33
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query:   13 VVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKI 237
            VVKLGDFGIAKVL +T +LA+TAIGTPYY+SPEIC+E+RYN+KSD+WSLGC+LYEM  L+HAFEG NM+ LV  I
Sbjct:  155 VVKLGDFGIAKVLSNTMELARTAIGTPYYLSPEICREERYNNKSDIWSLGCILYEMCSLKHAFEGRNMKQLVQSI 229          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: A0A7S1G4F6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4F6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.550e-33
Identity = 56/79 (70.89%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKI 237
            T+  VVKLGDFGIAKVLG T D A T IGTPYYMSPE+C+++ YN KSD+W+LGCVLYE+T L HAF+GNNM  LV+KI
Sbjct:  145 TKDNVVKLGDFGIAKVLGGTADYANTVIGTPYYMSPELCEDRPYNRKSDVWALGCVLYELTTLNHAFDGNNMCALVLKI 223          
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Match: S4RQ96_PETMA (Protein kinase domain-containing protein n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RQ96_PETMA)

HSP 1 Score: 125 bits (313), Expect = 4.640e-33
Identity = 56/79 (70.89%), Postives = 68/79 (86.08%), Query Frame = 1
Query:    1 TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDMWSLGCVLYEMTCLRHAFEGNNMRLLVMKI 237
            T++ +V+LGDFGIA+VL ST +LA+T IGTPYY+SPEIC+ K YNHKSDMW+LGCVLYEM  LRHAFE  NM+ LV+KI
Sbjct:  137 TKAGIVQLGDFGIARVLNSTTELARTCIGTPYYLSPEICENKPYNHKSDMWALGCVLYEMCTLRHAFEAGNMKNLVLKI 215          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16892.4925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ76_ECTSI2.070e-5198.84Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835Z4W0_9STRA1.640e-4282.56Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S1G592_9STRA1.560e-3470.93Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9VJ84_9CHLO4.440e-3472.00Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
UPI000C03DB2D1.380e-3368.35serine/threonine-protein kinase Nek5-like n=1 Tax=... [more]
A0A452EYV0_CAPHI2.450e-3371.05NIMA related kinase 5 n=1 Tax=Capra hircus TaxID=9... [more]
D8U9H8_VOLCA2.780e-3366.67Protein kinase domain-containing protein n=1 Tax=V... [more]
A0A7S0PHH9_CAFRO3.480e-3374.67Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S1G4F6_9STRA4.550e-3370.89Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
S4RQ96_PETMA4.640e-3370.89Protein kinase domain-containing protein n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16892contigEcto-sp13_S_contig16892:2564..3805 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score183.3
Seed ortholog evalue4.7e-44
Seed eggNOG ortholog2880.D7FQ76
Model size261
KEGG koko:K08857
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0589@1,KOG0589@2759
EC2.7.11.1
Cds size258
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.953793-CDS-Ecto-sp13_S_contig16892:2564..26611681462884.953793-CDS-Ecto-sp13_S_contig16892:2564..2661Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16892 2565..2661 -
1681462884.9642165-CDS-Ecto-sp13_S_contig16892:3252..33681681462884.9642165-CDS-Ecto-sp13_S_contig16892:3252..3368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16892 3253..3368 -
1681462884.9737644-CDS-Ecto-sp13_S_contig16892:3760..38051681462884.9737644-CDS-Ecto-sp13_S_contig16892:3760..3805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16892 3761..3805 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16892.4925.1prot_Ecto-sp13_S_contig16892.4925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16892 2565..3805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16892.4925.1

>prot_Ecto-sp13_S_contig16892.4925.1 ID=prot_Ecto-sp13_S_contig16892.4925.1|Name=mRNA_Ecto-sp13_S_contig16892.4925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
TRSRVVKLGDFGIAKVLGSTFDLAKTAIGTPYYMSPEICQEKRYNHKSDM
WSLGCVLYEMTCLRHAFEGNNMRLLVMKICSQDPRP
back to top

mRNA from alignment at Ecto-sp13_S_contig16892:2564..3805-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16892.4925.1 ID=mRNA_Ecto-sp13_S_contig16892.4925.1|Name=mRNA_Ecto-sp13_S_contig16892.4925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16892:2564..3805- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCGTTCGAGGGTGGTCAAGCTCGGAGACTTTGGCATCGCTAAGGTGAG GAGCGCGTTCGGATACATAGGCGATTAGCACTTTCGAGTGTGACGGAATG CATCAGCTACAATAGAAGACAGCACCCCGATCTGCGTATTGTCAGACGTC ACAGGTCAGCTCGACGTGACGATGCGAGAAACAAACGCGGCAGTTTCGAT GAGTGTTGCCCCACATTCCCTTCACAACGACAGGCAAAGCGCGAGCAGCA AACTTGCAAACTGGGATACTGTTGGGACGATTCGGCTCGGCAACCAACAC AGTTTTTAGTGTCGGCTGGCACTCTTTGTCCATAGAAGTACATATCTCCC GTTGTATGTCACTCTTGCGGTCGTACCTTGCCTTCTAAGCACCAATTTGT GCTTGCCGGTCGAAATCCCGTGAAACGATAAAAAAAGGTCCTCGGGAGCA CATTCGACCTGGCGAAAACAGCTATTGGAACTCCCTACTACATGTCGCCC GAGATATGCCAGGAGAAGCGGTACAACCACAAGTCCGACATGTGGAGCTT AGGGTGAGGGGAGAGGCGTGCACGCCGTGGGTCTGCAATCTCCAGATCTT TGGTGGTTCAGCTCGAACAACCCAAGCCTCTAGATCAACAGTTGGTCCGT CGAGGGCGCCCAAGTCGCTGCATAGCCAAGGCTGTGGGTCGCTGGTGTTC GCCAGGCCCATTGCTCTTTCGACGCAGTCGCACACCGTCGAAGATATCGC ACCTGGCCCGCTGATGCGTTACATCTGCATGATATGCGTGGCCTGCTTGG AGGCTGCAGGACACCGGAAGCAACAGCGTAGTAGACGGTTCGCTGGCCGG GGTCAATAGTATAATCTACAGTAGTCGGGCACGTTGTCTACGAATTCAGG CGGAGGAGTACGGAAAGGGTGGGTCGGGCTAGGTTCTATTGAAAGCCCGG GGTCTACTACTGTTACGGACGCAAAAGGCGTTTCATGCATGCGTCTTCAC CGTCCACTTCCTTTCTGTACTATTTGCTGCCGCACAACCTCCTCACTCTT GTTACCCCCGCCCCGCGCGCTCGCCCCAACCCTTCCCCTGTTCCTCCTTT CCTCTTGTGGGTTTCGGTACCTGAAATATCGCTGAAATATCAAGTTGCGT CCTGTACGAGATGACCTGCCTTCGTCATGCGTTTGAAGGCAACAACATGC GGCTGCTGGTGATGAAGATTTGCTCGCAAGACCCGCGGCCGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16892:2564..3805-

>mRNA_Ecto-sp13_S_contig16892.4925.1 ID=mRNA_Ecto-sp13_S_contig16892.4925.1|Name=mRNA_Ecto-sp13_S_contig16892.4925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16892:2564..3805- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCGTTCGAGGGTGGTCAAGCTCGGAGACTTTGGCATCGCTAAGGTCCT
CGGGAGCACATTCGACCTGGCGAAAACAGCTATTGGAACTCCCTACTACA
TGTCGCCCGAGATATGCCAGGAGAAGCGGTACAACCACAAGTCCGACATG
TGGAGCTTAGGTTGCGTCCTGTACGAGATGACCTGCCTTCGTCATGCGTT
TGAAGGCAACAACATGCGGCTGCTGGTGATGAAGATTTGCTCGCAAGACC
CGCGGCCG
back to top