mRNA_Ecto-sp13_S_contig16869.4911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16869.4911.1
Unique NamemRNA_Ecto-sp13_S_contig16869.4911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16869.4911.1 vs. uniprot
Match: D8LM70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM70_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 8.460e-78
Identity = 125/131 (95.42%), Postives = 129/131 (98.47%), Query Frame = 1 
Query:  217 PDGSNDDKNTPAFVSKNFAGTLVDPITVRTPISYNAQKRMENKYMYDDLPENMRRSNPPGGGRDLEEKMDAARQIEIRQRMQRERRERVNHYLDLAHRPIANTADIMALSQEEVDSRSRFFNEVPSTWEQV 609
            PDGSNDDKNTPAFVSKNFAGTLVDPITVRTPISYNAQKRMENKYMYD LPEN+RRSNPPGGGRDLEEKMDAARQI+IRQRMQ+ERRERVNHYLDLAHRPIA+TADIMALSQEEVDSRSRFFNEVPSTWEQ 
Sbjct:  162 PDGSNDDKNTPAFVSKNFAGTLVDPITVRTPISYNAQKRMENKYMYDALPENVRRSNPPGGGRDLEEKMDAARQIDIRQRMQKERRERVNHYLDLAHRPIASTADIMALSQEEVDSRSRFFNEVPSTWEQA 292
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16869.4911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LM70_ECTSI8.460e-7895.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16869contigEcto-sp13_S_contig16869:964..3646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score253.1
Seed ortholog evalue1.1e-64
Seed eggNOG ortholog2880.D8LM70
Model size618
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2EYCC@1,2SZW3@2759
Cds size618
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462884.0349808-CDS-Ecto-sp13_S_contig16869:963..10771681462884.0349808-CDS-Ecto-sp13_S_contig16869:963..1077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16869 964..1077 -
1681462884.04488-CDS-Ecto-sp13_S_contig16869:1548..17341681462884.04488-CDS-Ecto-sp13_S_contig16869:1548..1734Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16869 1549..1734 -
1681462884.054639-CDS-Ecto-sp13_S_contig16869:2192..22941681462884.054639-CDS-Ecto-sp13_S_contig16869:2192..2294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16869 2193..2294 -
1681462884.064617-CDS-Ecto-sp13_S_contig16869:2885..30091681462884.064617-CDS-Ecto-sp13_S_contig16869:2885..3009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16869 2886..3009 -
1681462884.074568-CDS-Ecto-sp13_S_contig16869:3554..36461681462884.074568-CDS-Ecto-sp13_S_contig16869:3554..3646Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16869 3555..3646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16869.4911.1prot_Ecto-sp13_S_contig16869.4911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16869 964..3646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16869.4911.1

>prot_Ecto-sp13_S_contig16869.4911.1 ID=prot_Ecto-sp13_S_contig16869.4911.1|Name=mRNA_Ecto-sp13_S_contig16869.4911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
MVGDARPGGRRDGSGHLPQPVEEREAQQPTRRFEGEEEGREDGSGNGGGR
NEAVRGGLGRRVPGKRAAAHDGPDGSNDDKNTPAFVSKNFAGTLVDPITV
RTPISYNAQKRMENKYMYDDLPENMRRSNPPGGGRDLEEKMDAARQIEIR
QRMQRERRERVNHYLDLAHRPIANTADIMALSQEEVDSRSRFFNEVPSTW
EQVRT*
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mRNA from alignment at Ecto-sp13_S_contig16869:964..3646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16869.4911.1 ID=mRNA_Ecto-sp13_S_contig16869.4911.1|Name=mRNA_Ecto-sp13_S_contig16869.4911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16869:964..3646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGGTGACGCTCGTCCCGGGGGCAGAAGAGATGGTTCTGGACATCT
ACCGCAACCGGTCGAAGAGCGGGAAGCTCAACAACCAACTCGGTGAGGGA
CTGACGACGTGTTTGTGTTGCTGCTGGCATTTGCTGCTGCTCTCGCTTTG
TGATATGTCGTGTGGTGCTGGTAGTGCCCGGTGCTACTACTGGCGGTTAC
TCACTGCTGTCACGGACCCGTGCACCTGATGGCTCCTTTGCCTGCTGGAT
GCCATAACGCACGTCCAGCAAACGGTTGTTGATCGCGCAATGCTTTTGAA
AGCCGGGGCGTCGGTTAGAGACCGGTGCCTTTCGTCTCGACGCAGGCATG
CCGTCGATGGTGGTAATAGGCTCGAGCGAACAAGAAGCTGGTGGGAGTCC
TCCCCTCTCTGGTTCGGTTTTTCGTGGTTGTACAATGGGTTATCTCATGC
TCTGAGTAGACTGCAGTGCCTGGTCCCCGGTATGTATACAAAAGTGCACT
TAGATCTGGCAAGCGCATGCCGCCGCTGCCAAGGGACCCCCACTGCTGTT
GTACACGGGCGTAGTCCCCAGCCAATCGAACAACCAAGTCACCCCCCCCT
CCCCGCCCCCCTCTTTTCCCTTGCAACCCCCCGGCAGCCGGTTCGAAGGG
GAAGAGGAAGGGAGAGAAGATGGAAGCGGAAACGGTGGTGGACGCAATGA
AGCGGTTCGAGGAGGGCTGGGAAGACGAGTACCAGGCAAGCGCGCCGCCG
CACATGACGGTGTATGTACCCCCGCGCCCCCCCCCCCAGCCCAAAACTCA
CTTGGTTAGTACCGATGCTGAGCCGTGATGTTGGTCCGTGAGAGGGTATG
TCTTGTGAAGGCAGTAAAACGCAATCAATGCCACCGCTTTTGTTTCTACT
TGTCTCGGCTCTGTCCAACATGATCGTACAGTGTAACAGCGCGAACTACC
CTGCAAGTTCGTACCGGAGCGCGCCATACATTACTTGAAACTTAAAGTTC
TCTGCCAAAAGGAAAGCACCAACTATTTTCACTTTTCTCACGCATGTCTT
GCACAAGCTCAGGGGAGGTTTAGGTTTCTATCTACTTGCCTCGGAAAATT
GACCAAAGGAAGAAGTCGTATTTTGTTTCGCTTTTCATGGGCACTCTCGT
GGTCTAATGACCGCGGGGTGTCTGAAGAGGAGCTAGAAACAAGATGGCAA
GAAATCTCTGCTGCTGCCACGCTTTTACGGTCAAGTCCACCCTCCGCTTT
TTGTATGTACCGTAACCGAACCGATTTCATTTGTTTTTGTGACGTTGCCG
TGCCCCCCACACTCCCGCACGCCCCCACTTCACGGCGGACGTGAAAGTGC
AGCCTGACGGCAGCAATGACGACAAGAACACCCCGGCCTTCGTGAGCAAG
AACTTCGCCGGTACTCTGGTGGACCCCATCACAGTCAGGACGCCCATCTC
ATACGTGCGTTCCAGGTTTTGTTGCTATTGCTGATGATGAGTTTCAATTG
TTTGTGCGTTGTTGTTGATCATGATAATTTTTCAGATCGTTGTTGTTGTA
GTTGATGATGGTTTTGATATTCGTTGTCGTTGCTGCAGCACGGAATATTG
CTCTCGGTCTTTGTCCACTCCATCGCGACCCTCATCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCGATACGTACCTGTCTCCTCTCTCTGTTGCTTTACGC
GAGGCAACTGATCGGTGCTAACGCCGTGTACGCTTGTGCGTGTGTCCCAT
CTTTTTCTGGCGCCAGTCTACTACATACCGTTCGGTGTGCATGTGTGTAT
CACCCCCCGGGGTCATCACACAAGATCAAGGCATGTTTTTGACGACTGCG
TTTGTCACATGGTGCCACGCACCGCATCGTTGCCGTCGACGCTGCGTCTC
CCCCTCCAACAGAACGCGCAGAAGCGCATGGAGAACAAGTACATGTACGA
CGACCTCCCGGAGAACATGAGGCGCAGCAACCCCCCGGGTGGCGGGCGTG
ACCTCGAGGAGAAGATGGACGCGGCCAGGCAGATCGAAATCCGACAGCGC
ATGCAGAGGGAGCGGAGGGAGCGCGTGAACCACTACCTAGACCTTGCGGT
GAGGAGGCAGGGATGATGTCATCATGCGCTCGGCAGCAGCTCTACCTTCA
GTTTGTGCTGTGACTGTTTTTGGTAGCCCCCTCCCCGCCCTCCCCGTGTA
AGTTACGGCACCGCCCCCGCGAGAGCGACCCAACTCTTCTCCCTGAAAGC
CGAACGTTCAGGGTAATCAGTGGTAGAGAGTTGTGTCGTCTGTTGTCGCA
GCATGTGCTCGACCGGAGAAAGAGCACACACACGCGCACGACCACCACTT
TATCGGGACCACCGCACGACGACCACCGACATATTTTTTAGGTTTTCCCC
TCATGTGAGCACGTCTTTTACCTTTGAACAATGCGAAAAAAGATGAAGGC
GCAACACAAGGCGAACGTATTTCCACCAGGAACGTTTGGTGATGTTTTGT
CCATCGATCTTTTTTTGTTTGTTACGACGCCGTGTGTATTGGCTCCCTCT
TCTCTTTTTTTCCCTGCAGCACCGCCCGATCGCGAACACGGCGGACATCA
TGGCGCTGTCTCAGGAGGAGGTGGACTCTAGGTCAAGGTTCTTTAACGAA
GTGCCCAGTACCTGGGAACAGGTGCGCACATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16869:964..3646-

>mRNA_Ecto-sp13_S_contig16869.4911.1 ID=mRNA_Ecto-sp13_S_contig16869.4911.1|Name=mRNA_Ecto-sp13_S_contig16869.4911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16869:964..3646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGGTGACGCTCGTCCCGGGGGCAGAAGAGATGGTTCTGGACATCT
ACCGCAACCGGTCGAAGAGCGGGAAGCTCAACAACCAACTCGCCGGTTCG
AAGGGGAAGAGGAAGGGAGAGAAGATGGAAGCGGAAACGGTGGTGGACGC
AATGAAGCGGTTCGAGGAGGGCTGGGAAGACGAGTACCAGGCAAGCGCGC
CGCCGCACATGACGGTCCTGACGGCAGCAATGACGACAAGAACACCCCGG
CCTTCGTGAGCAAGAACTTCGCCGGTACTCTGGTGGACCCCATCACAGTC
AGGACGCCCATCTCATACAACGCGCAGAAGCGCATGGAGAACAAGTACAT
GTACGACGACCTCCCGGAGAACATGAGGCGCAGCAACCCCCCGGGTGGCG
GGCGTGACCTCGAGGAGAAGATGGACGCGGCCAGGCAGATCGAAATCCGA
CAGCGCATGCAGAGGGAGCGGAGGGAGCGCGTGAACCACTACCTAGACCT
TGCGCACCGCCCGATCGCGAACACGGCGGACATCATGGCGCTGTCTCAGG
AGGAGGTGGACTCTAGGTCAAGGTTCTTTAACGAAGTGCCCAGTACCTGG
GAACAGGTGCGCACATGA
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