mRNA_Ecto-sp13_S_contig16800.4875.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16800.4875.1
Unique NamemRNA_Ecto-sp13_S_contig16800.4875.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: D8LJ48_ECTSI (Similar to doublecortin and CaM kinase-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ48_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 4.760e-96
Identity = 201/310 (64.84%), Postives = 212/310 (68.39%), Query Frame = 1
Query:   46 KELVTVAVVLAAAVVVWR*VSRRRYHWKQXXXXXXASARSADEDDDLESAGDDMVNPTGFDIRSIDSAGADFLSTGGDIESGSSGV-------QSRVAIRAAGDSSLSGEEKESASERSGCDTSATVRTHHPNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQPSTGTNSSAMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSVYSRDSERSGDHDDGDLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTITEDSYENEDGD 954
            +ELVT+AVV  AAVVVWR VSRRRYHWKQ      A ARS DEDDDLES GDD+VNP G DI S+ SAGADFLST GDI              QSR AI AAGDSSLSGEEKESASERS CDTSATVRTHHP+DTDSG+LGS E++A A                    FST+E QPSTGTNS AMAM KESSR SSQ EFDVLHHGSSGNSSNNSVYSRD                     LADA  G+    GEREGQ ERS+ HG LERSSGS    DDQGAST GSG G SLSTITEDSYENEDGD
Sbjct:   44 RELVTLAVVFVAAVVVWRWVSRRRYHWKQQERHDTADARSVDEDDDLESRGDDVVNPEGSDINSVASAGADFLSTRGDIXXXXXXXXXXXXXXQSREAIGAAGDSSLSGEEKESASERSSCDTSATVRTHHPDDTDSGSLGS-EISAAATAAQAEAGSLPSDRNGSR--FSTEEAQPSTGTNSPAMAMRKESSRHSSQLEFDVLHHGSSGNSSNNSVYSRDGXXXXXXXXXXXXXXXXXXXXLADALHGSRIAAGEREGQLERSVTHGELERSSGSVYGHDDQGASTEGSGGGASLSTITEDSYENEDGD 350          
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: A0A6H5KAI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI9_9PHAE)

HSP 1 Score: 274 bits (700), Expect = 1.510e-88
Identity = 181/245 (73.88%), Postives = 191/245 (77.96%), Query Frame = 1
Query:  205 MVNPTGFDIRSIDSAGADFLSTGGDIESGS-------SGVQSRVAIRAAGDSSLSGEEKES-----ASERSGCDTSATVRTHHPNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQPSTGTNSSAMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSVYSRDSERSGDHDDGDLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRG 903
            MVNP G DIRSIDSAGADFLSTGGD+E          SGVQSR AI AAG+SSLSGEEKES     ASERS CDTSA V+THHP DT+S TL SAE AA  XXXXXXXXX           FST+E QPSTGTNS AMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSV+SRDSERS D DDG+LGGHSVNHDVLA A RGA  T GEREGQPER++ HG+LERSSGS C Q D GAS GGSG G
Sbjct:    1 MVNPAGSDIRSIDSAGADFLSTGGDMEXXXXXXXXXXSGVQSREAIGAAGNSSLSGEEKESVGTRSASERSSCDTSAPVQTHHPGDTNSATLASAETAAXXXXXXXXXXXGSLPSDRNRSRFSTEEVQPSTGTNSXAMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSVFSRDSERSRDRDDGELGGHSVNHDVLAVALRGARITTGEREGQPERAVTHGDLERSSGSVCGQHDPGASAGGSGGG 245          
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: D7G381_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G381_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.410e-52
Identity = 159/327 (48.62%), Postives = 186/327 (56.88%), Query Frame = 1
Query:    1 RSGYTSEMDLAGSQTKELVTVAVVLAAAVVVWR*VSRRRYHWKQXXXXXXASARSADEDDDLESAGDD-MVNPTGFDIR----SIDSAGADFL-STGGDIESGSSGVQSRVAIRAAGDSSLSGEEKESASERSGCDTSATVRTHH-PNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQP---STGTNSSAMAMSKESSRRSSQSEFDVLHHGSSG---NSSNNSVYSRDSERSGDHDDG------DLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTIT 924
            RS  T   D+AGS+T+ELVT+AVVLAAAVVVWR VSR+ + WK+      A ARS DE  DLE+  DD  VNP G DI        SA AD L S   D++SGS GV+SR                   SERS C T  T RTHH P+DTDSGTL  AEMAA                       S    +P   S GT S AMAMSKES RRS++SEFDV HHG +    +S+NN VYS+  E +G  D        +L G SV HDVL DA   A  T GEREG PER + +G+LE+ SGSG  Q  +GA TG SG G+SLSTIT
Sbjct:   53 RSRQTRSADIAGSRTQELVTLAVVLAAAVVVWRWVSRKVHQWKEQDRRNTADARSDDEGSDLEAGSDDDRVNPAGPDIEPGATDFLSASADDLESRRSDVDSGSWGVRSRE------------------SERSSCSTWMTARTHHNPDDTDSGTLEWAEMAAAVAEGGSLPSDR-----------SVSRNRPEEASRGTISLAMAMSKESRRRSTRSEFDVRHHGGNSAKSSSNNNCVYSQHGESNGGCDXXXXXXXXELDGRSVYHDVLEDALHRARITTGEREGGPERLVANGDLEQYSGSGDGQAARGAYTGRSGGGSSLSTIT 350          
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: A0A6H5JND7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND7_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.830e-35
Identity = 150/358 (41.90%), Postives = 168/358 (46.93%), Query Frame = 1
Query:   46 KELVTVAVVLAAAVVVWR*VSRRRYHWKQXXXXXXASARSADEDDDLESAGDD-MVNPTGFDIRSIDSAGADFL------STGGDIESGSSGVQSR-VAIRAAGDSSLSGEEKESA-----------------------------------------SERSGCDTSATVRTHH-PNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQP---STGTNSSAMAMSKESSRRSSQSEFDVLHHG-SSGNSS-NNSVYSRDSERSGD------HDDGDLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTITEDSY 936
            +ELVT+AVVLAAAVV  R VS +   WK+      A AR  DE  DLE+ GDD  VNP                      S   D++SGS GV+SR VA   AG SSL GEE ES                                          SE S C T  T RTHH P+DTDSGTLG AEMAA                       S    +P   STG  S AMAMSKES RRS++SEFDV HHG SSG SS NNSVYS   E +GD                                 GEREG PERS  +G+LER SGSG  Q  +GASTGGSG G+SLSTIT D +
Sbjct:   18 QELVTLAVVLAAAVVFCRWVSGKVQQWKEQDRRNTADARFDDEGSDLEAGGDDDSVNPAXXXXXXXXXXXXXXXXXXXVDSRRSDVDSGSWGVRSRGVAGSTAGKSSLGGEENESVGFVTCPVSALRFRRIFIAIFYFTFAPPPVLDPAAPPVCLKESEMSNCSTWMTARTHHNPDDTDSGTLGWAEMAAAVAEVGYIPSDR-----------SVSRNRPEEASTGAKSLAMAMSKESLRRSTRSEFDVWHHGGSSGKSSRNNSVYSEHRESNGDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIRTGEREGGPERSAANGDLERYSGSGDGQAARGASTGGSGGGSSLSTITADGF 364          
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: A0A6H5JFK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK0_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 4.230e-18
Identity = 57/84 (67.86%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  151 ASARSADEDDDLESAGDDMVNPTGFDIRSIDSAGADFLSTGGDIESGSSG-------VQSRVAIRAAGDSSLSGEEKESASERS 381
            A ARSADEDD+LES GDDMVNP G DIR IDSAGADFLSTGGD              VQSR AI AAG+SSLSGEEK+S   RS
Sbjct:   11 ADARSADEDDNLESGGDDMVNPAGSDIRFIDSAGADFLSTGGDXXXXXXXXXXXXXXVQSREAIGAAGNSSLSGEEKQSVRTRS 94          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJ48_ECTSI4.760e-9664.84Similar to doublecortin and CaM kinase-like 3 n=1 ... [more]
A0A6H5KAI9_9PHAE1.510e-8873.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G381_ECTSI1.410e-5248.62N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5JND7_9PHAE1.830e-3541.90Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JFK0_9PHAE4.230e-1867.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16800contigEcto-sp13_S_contig16800:1851..3541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size955
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionsimilar to doublecortin and CaM kinase-like 3
Ec32 orthologEc-02_004750.1
Cds size750
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.4047868-CDS-Ecto-sp13_S_contig16800:1850..24381681462881.4047868-CDS-Ecto-sp13_S_contig16800:1850..2438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16800 1851..2438 -
1681462881.4146976-CDS-Ecto-sp13_S_contig16800:2837..29991681462881.4146976-CDS-Ecto-sp13_S_contig16800:2837..2999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16800 2838..2999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.425714-UTR-Ecto-sp13_S_contig16800:2999..31551681462881.425714-UTR-Ecto-sp13_S_contig16800:2999..3155Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16800 3000..3155 -
1681462881.4338555-UTR-Ecto-sp13_S_contig16800:3493..35411681462881.4338555-UTR-Ecto-sp13_S_contig16800:3493..3541Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16800 3494..3541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16800.4875.1prot_Ecto-sp13_S_contig16800.4875.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16800 1851..2999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16800.4875.1

>prot_Ecto-sp13_S_contig16800.4875.1 ID=prot_Ecto-sp13_S_contig16800.4875.1|Name=mRNA_Ecto-sp13_S_contig16800.4875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp
MVNPTGFDIRSIDSAGADFLSTGGDIESGSSGVQSRVAIRAAGDSSLSGE
EKESASERSGCDTSATVRTHHPNDTDSGTLGSAEMAATATVTAAQAGAGC
PPSDRNRSRFSTDEGQPSTGTNSSAMAMSKESSRRSSQSEFDVLHHGSSG
NSSNNSVYSRDSERSGDHDDGDLGGHSVNHDVLADARRGAHTTMGEREGQ
PERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTITEDSYENEDGD
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mRNA from alignment at Ecto-sp13_S_contig16800:1851..3541-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16800.4875.1 ID=mRNA_Ecto-sp13_S_contig16800.4875.1|Name=mRNA_Ecto-sp13_S_contig16800.4875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1691bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16800:1851..3541- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCTGGCTATACGAGCGAGATGGACTTGGCCGGATCACAAACAAAGGT CAGTGGGAGGTCTTGGATCCACTCTGCTTGAACTTGGGCAAATGGAGTAA ACTGCTGATGACCCCTCCTGTCCTGATACCACATTCCTGCTTGACTCTGA TTCCAAAAGCTTTGACCCCCACGGTAGATAATTTCGAGTGCTTTGTCCCC TAGTTTTTGCGCAAACTAATTAGAGCAGTTGAAGAAATGCAAGGAAAAAT ATACGAAACAAAGATTGCTGTAGTGTCGCCTCGCCCGCATGGCATGTATG TGGTGAATGCGTACACGAGTACAAGGGTTCGGTGTCGAGGGCCGATCTTA TTGCCCCTCAAACAAGATGGTTGTGACGTCCAACAGGAGTTGGTCACCGT GGCGGTGGTCCTCGCCGCTGCCGTAGTCGTCTGGAGGTGAGTTTCGAGGA GGAGATACCACTGGAAGCAACAAGAGAGCGATGACACCGCCAGCGCCCGT TCGGCGGATGAGGACGACGACCTCGAGTCCGCGGGTGACGACATGGTCAA CCCTACGGGCTTTGACATCAGGTCCATCGACTCAGCAGGCGCTGACTTCC TATCTACAGGTGGCGACATCGAGTCCGGGAGCTCGGGCGTCCAGTCAAGA GTGGCTATACGGGCCGCCGGCGACTCTTCGCTGAGTGGGGAGGAGAAGGA ATCGGTGCGACCGCGCACCGTTCTGCTCCTTGCGCACAATTGATGTTTTG TCTTGGTACCGAGTCGCCAGAGTTGGGTGTACAGTAATAGTTGTGAGACC ACTGCAGCGTCGTTTAGTGGGAAAATAGCACATCCTACTCGTCATGGCCG CATATCGTGTTGCAAATATCTTCGACATGGCCAGGAACGAGGTACAACCT AGCATGACGATGGTTGGGTTGCCTTCAACGCATGTAACATAACAACACCC GATAACGGTTAACATAAATCGTAAATTTTCGTGTATCATGTGCCCGGCTA GTACCCTTCGACTCCATTGAGTTCGTTGTGGAAATTTACCACTTCACCTC CGCCTCCCCCCCTCTCTTCTTGGACCCCGTTTGCTCCGCCTGTTTGCGGG AAGGCTTCCGAGAGGTCCGGCTGCGACACGTCGGCAACTGTTCGAACGCA CCACCCAAATGACACCGACAGCGGAACTCTGGGATCGGCGGAAATGGCGG CGACGGCGACGGTGACGGCGGCTCAGGCGGGGGCGGGCTGCCCGCCCTCC GACCGGAATCGGTCGAGGTTCAGCACGGATGAGGGACAGCCGTCGACAGG AACCAACTCGTCAGCCATGGCAATGAGTAAAGAGTCATCCAGACGCTCCT CGCAGTCGGAGTTCGATGTGTTGCACCACGGTAGCAGCGGCAATAGCAGC AACAACAGTGTTTACAGCCGCGACAGTGAGAGAAGCGGTGATCATGACGA CGGCGACCTGGGCGGACATTCTGTCAACCATGATGTCCTCGCGGACGCCC GTCGCGGGGCACACACCACGATGGGTGAGAGGGAGGGGCAACCGGAGAGG TCCATGATGCATGGAAACCTTGAGCGGTCCTCTGGGTCGGGGTGCGATCA AGACGACCAGGGGGCATCCACCGGGGGTAGCGGACGGGGAACATCACTCT CGACCATCACCGAGGACAGCTATGAAAATGAAGATGGTGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16800:1851..3541-

>mRNA_Ecto-sp13_S_contig16800.4875.1 ID=mRNA_Ecto-sp13_S_contig16800.4875.1|Name=mRNA_Ecto-sp13_S_contig16800.4875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16800:1851..3541- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAACCCTACGGGCTTTGACATCAGGTCCATCGACTCAGCAGGCGC
TGACTTCCTATCTACAGGTGGCGACATCGAGTCCGGGAGCTCGGGCGTCC
AGTCAAGAGTGGCTATACGGGCCGCCGGCGACTCTTCGCTGAGTGGGGAG
GAGAAGGAATCGGCTTCCGAGAGGTCCGGCTGCGACACGTCGGCAACTGT
TCGAACGCACCACCCAAATGACACCGACAGCGGAACTCTGGGATCGGCGG
AAATGGCGGCGACGGCGACGGTGACGGCGGCTCAGGCGGGGGCGGGCTGC
CCGCCCTCCGACCGGAATCGGTCGAGGTTCAGCACGGATGAGGGACAGCC
GTCGACAGGAACCAACTCGTCAGCCATGGCAATGAGTAAAGAGTCATCCA
GACGCTCCTCGCAGTCGGAGTTCGATGTGTTGCACCACGGTAGCAGCGGC
AATAGCAGCAACAACAGTGTTTACAGCCGCGACAGTGAGAGAAGCGGTGA
TCATGACGACGGCGACCTGGGCGGACATTCTGTCAACCATGATGTCCTCG
CGGACGCCCGTCGCGGGGCACACACCACGATGGGTGAGAGGGAGGGGCAA
CCGGAGAGGTCCATGATGCATGGAAACCTTGAGCGGTCCTCTGGGTCGGG
GTGCGATCAAGACGACCAGGGGGCATCCACCGGGGGTAGCGGACGGGGAA
CATCACTCTCGACCATCACCGAGGACAGCTATGAAAATGAAGATGGTGAC
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