mRNA_Ecto-sp13_S_contig16800.4875.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: D8LJ48_ECTSI (Similar to doublecortin and CaM kinase-like 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ48_ECTSI) HSP 1 Score: 309 bits (791), Expect = 4.760e-96 Identity = 201/310 (64.84%), Postives = 212/310 (68.39%), Query Frame = 1
Query: 46 KELVTVAVVLAAAVVVWR*VSRRRYHWKQXXXXXXASARSADEDDDLESAGDDMVNPTGFDIRSIDSAGADFLSTGGDIESGSSGV-------QSRVAIRAAGDSSLSGEEKESASERSGCDTSATVRTHHPNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQPSTGTNSSAMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSVYSRDSERSGDHDDGDLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTITEDSYENEDGD 954
+ELVT+AVV AAVVVWR VSRRRYHWKQ A ARS DEDDDLES GDD+VNP G DI S+ SAGADFLST GDI QSR AI AAGDSSLSGEEKESASERS CDTSATVRTHHP+DTDSG+LGS E++A A FST+E QPSTGTNS AMAM KESSR SSQ EFDVLHHGSSGNSSNNSVYSRD LADA G+ GEREGQ ERS+ HG LERSSGS DDQGAST GSG G SLSTITEDSYENEDGD
Sbjct: 44 RELVTLAVVFVAAVVVWRWVSRRRYHWKQQERHDTADARSVDEDDDLESRGDDVVNPEGSDINSVASAGADFLSTRGDIXXXXXXXXXXXXXXQSREAIGAAGDSSLSGEEKESASERSSCDTSATVRTHHPDDTDSGSLGS-EISAAATAAQAEAGSLPSDRNGSR--FSTEEAQPSTGTNSPAMAMRKESSRHSSQLEFDVLHHGSSGNSSNNSVYSRDGXXXXXXXXXXXXXXXXXXXXLADALHGSRIAAGEREGQLERSVTHGELERSSGSVYGHDDQGASTEGSGGGASLSTITEDSYENEDGD 350
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: A0A6H5KAI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI9_9PHAE) HSP 1 Score: 274 bits (700), Expect = 1.510e-88 Identity = 181/245 (73.88%), Postives = 191/245 (77.96%), Query Frame = 1
Query: 205 MVNPTGFDIRSIDSAGADFLSTGGDIESGS-------SGVQSRVAIRAAGDSSLSGEEKES-----ASERSGCDTSATVRTHHPNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQPSTGTNSSAMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSVYSRDSERSGDHDDGDLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRG 903
MVNP G DIRSIDSAGADFLSTGGD+E SGVQSR AI AAG+SSLSGEEKES ASERS CDTSA V+THHP DT+S TL SAE AA XXXXXXXXX FST+E QPSTGTNS AMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSV+SRDSERS D DDG+LGGHSVNHDVLA A RGA T GEREGQPER++ HG+LERSSGS C Q D GAS GGSG G
Sbjct: 1 MVNPAGSDIRSIDSAGADFLSTGGDMEXXXXXXXXXXSGVQSREAIGAAGNSSLSGEEKESVGTRSASERSSCDTSAPVQTHHPGDTNSATLASAETAAXXXXXXXXXXXGSLPSDRNRSRFSTEEVQPSTGTNSXAMAMSKESSRRSSQSEFDVLHHGSSGNSSNNSVFSRDSERSRDRDDGELGGHSVNHDVLAVALRGARITTGEREGQPERAVTHGDLERSSGSVCGQHDPGASAGGSGGG 245
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: D7G381_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G381_ECTSI) HSP 1 Score: 193 bits (490), Expect = 1.410e-52 Identity = 159/327 (48.62%), Postives = 186/327 (56.88%), Query Frame = 1
Query: 1 RSGYTSEMDLAGSQTKELVTVAVVLAAAVVVWR*VSRRRYHWKQXXXXXXASARSADEDDDLESAGDD-MVNPTGFDIR----SIDSAGADFL-STGGDIESGSSGVQSRVAIRAAGDSSLSGEEKESASERSGCDTSATVRTHH-PNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQP---STGTNSSAMAMSKESSRRSSQSEFDVLHHGSSG---NSSNNSVYSRDSERSGDHDDG------DLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTIT 924
RS T D+AGS+T+ELVT+AVVLAAAVVVWR VSR+ + WK+ A ARS DE DLE+ DD VNP G DI SA AD L S D++SGS GV+SR SERS C T T RTHH P+DTDSGTL AEMAA S +P S GT S AMAMSKES RRS++SEFDV HHG + +S+NN VYS+ E +G D +L G SV HDVL DA A T GEREG PER + +G+LE+ SGSG Q +GA TG SG G+SLSTIT
Sbjct: 53 RSRQTRSADIAGSRTQELVTLAVVLAAAVVVWRWVSRKVHQWKEQDRRNTADARSDDEGSDLEAGSDDDRVNPAGPDIEPGATDFLSASADDLESRRSDVDSGSWGVRSRE------------------SERSSCSTWMTARTHHNPDDTDSGTLEWAEMAAAVAEGGSLPSDR-----------SVSRNRPEEASRGTISLAMAMSKESRRRSTRSEFDVRHHGGNSAKSSSNNNCVYSQHGESNGGCDXXXXXXXXELDGRSVYHDVLEDALHRARITTGEREGGPERLVANGDLEQYSGSGDGQAARGAYTGRSGGGSSLSTIT 350
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: A0A6H5JND7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JND7_9PHAE) HSP 1 Score: 145 bits (367), Expect = 1.830e-35 Identity = 150/358 (41.90%), Postives = 168/358 (46.93%), Query Frame = 1
Query: 46 KELVTVAVVLAAAVVVWR*VSRRRYHWKQXXXXXXASARSADEDDDLESAGDD-MVNPTGFDIRSIDSAGADFL------STGGDIESGSSGVQSR-VAIRAAGDSSLSGEEKESA-----------------------------------------SERSGCDTSATVRTHH-PNDTDSGTLGSAEMAATAXXXXXXXXXXXXXXXXXXXXFSTDEGQP---STGTNSSAMAMSKESSRRSSQSEFDVLHHG-SSGNSS-NNSVYSRDSERSGD------HDDGDLGGHSVNHDVLADARRGAHTTMGEREGQPERSMMHGNLERSSGSGCDQDDQGASTGGSGRGTSLSTITEDSY 936
+ELVT+AVVLAAAVV R VS + WK+ A AR DE DLE+ GDD VNP S D++SGS GV+SR VA AG SSL GEE ES SE S C T T RTHH P+DTDSGTLG AEMAA S +P STG S AMAMSKES RRS++SEFDV HHG SSG SS NNSVYS E +GD GEREG PERS +G+LER SGSG Q +GASTGGSG G+SLSTIT D +
Sbjct: 18 QELVTLAVVLAAAVVFCRWVSGKVQQWKEQDRRNTADARFDDEGSDLEAGGDDDSVNPAXXXXXXXXXXXXXXXXXXXVDSRRSDVDSGSWGVRSRGVAGSTAGKSSLGGEENESVGFVTCPVSALRFRRIFIAIFYFTFAPPPVLDPAAPPVCLKESEMSNCSTWMTARTHHNPDDTDSGTLGWAEMAAAVAEVGYIPSDR-----------SVSRNRPEEASTGAKSLAMAMSKESLRRSTRSEFDVWHHGGSSGKSSRNNSVYSEHRESNGDCXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIRTGEREGGPERSAANGDLERYSGSGDGQAARGASTGGSGGGSSLSTITADGF 364
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Match: A0A6H5JFK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFK0_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 4.230e-18 Identity = 57/84 (67.86%), Postives = 60/84 (71.43%), Query Frame = 1
Query: 151 ASARSADEDDDLESAGDDMVNPTGFDIRSIDSAGADFLSTGGDIESGSSG-------VQSRVAIRAAGDSSLSGEEKESASERS 381
A ARSADEDD+LES GDDMVNP G DIR IDSAGADFLSTGGD VQSR AI AAG+SSLSGEEK+S RS
Sbjct: 11 ADARSADEDDNLESGGDDMVNPAGSDIRFIDSAGADFLSTGGDXXXXXXXXXXXXXXVQSREAIGAAGNSSLSGEEKQSVRTRS 94 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16800.4875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16800.4875.1 >prot_Ecto-sp13_S_contig16800.4875.1 ID=prot_Ecto-sp13_S_contig16800.4875.1|Name=mRNA_Ecto-sp13_S_contig16800.4875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=250bp MVNPTGFDIRSIDSAGADFLSTGGDIESGSSGVQSRVAIRAAGDSSLSGEback to top mRNA from alignment at Ecto-sp13_S_contig16800:1851..3541- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16800.4875.1 ID=mRNA_Ecto-sp13_S_contig16800.4875.1|Name=mRNA_Ecto-sp13_S_contig16800.4875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1691bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16800:1851..3541- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16800:1851..3541- >mRNA_Ecto-sp13_S_contig16800.4875.1 ID=mRNA_Ecto-sp13_S_contig16800.4875.1|Name=mRNA_Ecto-sp13_S_contig16800.4875.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=750bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16800:1851..3541- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |