mRNA_Ecto-sp13_S_contig1680.4871.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1680.4871.1
Unique NamemRNA_Ecto-sp13_S_contig1680.4871.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Match: D8LTM5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM5_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 7.210e-98
Identity = 145/155 (93.55%), Postives = 149/155 (96.13%), Query Frame = 1 
Query:    1 LKGRHTRMTSFGAGLGGGGVEESNALLLMMDFEDADVEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEGIDMPTGPTLIMRRISKGQEIRKMFAERIVVKAVVKSLAGDGAPRGTKVRTVLHEGLV 465
            L+GRHTRMTSFGAG+GGGG EESNALLL MDFEDAD EELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGE ID+ TGPTLIMRRIS+GQEIRKMFAERIVVKAVVKSLAGDGAP GTKVRTVLHEGLV
Sbjct:    2 LRGRHTRMTSFGAGIGGGGGEESNALLLRMDFEDADAEELRQWIRRYPFGTALPVQPFSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEEIDVLTGPTLIMRRISEGQEIRKMFAERIVVKAVVKSLAGDGAPPGTKVRTVLHEGLV 156
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BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Match: A0A7S0L9D0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L9D0_9EUKA)

HSP 1 Score: 80.1 bits (196), Expect = 5.390e-16
Identity = 40/114 (35.09%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:   76 LLLMMDFEDADVEELRQWIRRYPFGTALPVQPFSLVETVT----GVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEGIDMPTGPTLIMRRISKGQEIRKMFAERIVVKAVVKSL 405
            +LL +     D   L+QW+ R PF +ALPVQP  ++        G+D+ FR+KPT+++ S +GGL F +     GE   +     L++ R+S GQ I K F+ER++++ +++ L
Sbjct:   28 VLLKVTLARCDSHGLQQWLLRRPFASALPVQPMLVLPIKDPPPLGIDLTFRRKPTMDKSSSEGGLRFAVSAPGDGEAGVVDGDGILLVTRVSSGQSIGKGFSERVLIEMLLREL 141
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BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Match: A0A7S0P2Y7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P2Y7_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 3.560e-14
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:   76 LLLMMDFEDADVEELRQWIRRYPFGTALPVQPF---SLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEGIDMPTGPTLIMRRISKGQEIRKMFAERIVVKAVVKSL 405
            +LL +     + + L+ W+RR PF   LP+QP    +L     GVDV FR+KP+ E+G+QDGG+   I       G D     +L++ RIS+GQ   K F+ER + +++V+ L
Sbjct:   36 VLLQVRLSSVNSDALQDWLRRRPFAAVLPIQPMLVQALQPPQQGVDVTFRRKPSSEKGAQDGGIRIAI-------GHD-----SLLVTRISEGQYTSKAFSERALCRSIVRDL 136
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BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Match: A0A7S2CIM1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CIM1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.290e-10
Identity = 41/137 (29.93%), Postives = 71/137 (51.82%), Query Frame = 1 
Query:   97 EDADVEELRQWIRRYPFGTALPVQPFSLVE------------TVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEGIDMPTGPTLIMRRISKGQEIRKMFAERIVVKAVVKSLAGDGAPRGTKVR--TVLHEGLV 465
            E   ++EL++W++ YP+   LPVQP  LV+            T   + V FR+KPT  +G  DGG+  T+   V     D+     L +R +S+G  + K  +++++ K++++ L     PR  KV   +VLH  ++
Sbjct:   13 EAGGIDELKRWLKAYPYPAVLPVQPM-LVDREWSCDNRPDEPTAETLRVTFRRKPTDAKGPVDGGIEITLVTGVDAADHDL----ALTLRALSEGNYVDKSLSQKLLAKSIIRDL-----PRVPKVSITSVLHSAML 139
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BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Match: A0A7S4IU80_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IU80_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.010e-7
Identity = 26/60 (43.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   97 EDADVEELRQWIRRYPFGTALPVQPFSLVETVTG--VDVVFRKKPTLERGSQDGGLCFTI 270
            +DA +E++R ++R +PF   LPVQP + + T  G  V V F +K T E+GS DGG+ F +
Sbjct:   56 KDAILEDVRSYVRSFPFAAVLPVQPLTYIPTADGGGVKVTFLRKKTKEKGSVDGGIDFDV 115
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BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Match: A0A7S1VGN9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VGN9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.150e-5
Identity = 34/87 (39.08%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:   91 DFEDADVEELRQWIRRYPFGTALPVQPFSLVETVTG-VDVVFRKKPTLERGSQDGGLCFTIEDKVSGEGIDMPTGPTLIMRRISKGQ 348
            D EDA + +++ + + +PF   LPVQP   + T  G VDV+F +K T E+GS DGG+ F +   V G+     T   + ++R SKGQ
Sbjct:   70 DPEDA-LAKVQAYTQAFPFAAVLPVQPLQYLPTHEGGVDVLFLRKKTKEKGSVDGGIRFFVS-LVDGD----QTTVDVEVKRNSKGQ 150
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1680.4871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LTM5_ECTSI7.210e-9893.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0L9D0_9EUKA5.390e-1635.09Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0P2Y7_9EUKA3.560e-1437.17Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2CIM1_9STRA1.290e-1029.93Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4IU80_9STRA3.010e-743.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1VGN9_9STRA7.150e-539.08Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1680contigEcto-sp13_S_contig1680:401..2759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score274.6
Seed ortholog evalue2.7e-71
Seed eggNOG ortholog2880.D8LTM5
Model size468
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EA7H@1,2SGGG@2759
Cds size447
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.133033-UTR-Ecto-sp13_S_contig1680:400..4211681462881.133033-UTR-Ecto-sp13_S_contig1680:400..421Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1680 401..421 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462881.144784-CDS-Ecto-sp13_S_contig1680:421..5371681462881.144784-CDS-Ecto-sp13_S_contig1680:421..537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1680 422..537 +
1681462881.1540308-CDS-Ecto-sp13_S_contig1680:1180..12611681462881.1540308-CDS-Ecto-sp13_S_contig1680:1180..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1680 1181..1261 +
1681462881.1642203-CDS-Ecto-sp13_S_contig1680:2115..22571681462881.1642203-CDS-Ecto-sp13_S_contig1680:2115..2257Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1680 2116..2257 +
1681462881.1750135-CDS-Ecto-sp13_S_contig1680:2651..27591681462881.1750135-CDS-Ecto-sp13_S_contig1680:2651..2759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1680 2652..2759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1680.4871.1prot_Ecto-sp13_S_contig1680.4871.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1680 422..2759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1680.4871.1

>prot_Ecto-sp13_S_contig1680.4871.1 ID=prot_Ecto-sp13_S_contig1680.4871.1|Name=mRNA_Ecto-sp13_S_contig1680.4871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MTSFGAGLGGGGVEESNALLLMMDFEDADVEELRQWIRRYPFGTALPVQP
FSLVETVTGVDVVFRKKPTLERGSQDGGLCFTIEDKVSGEGIDMPTGPTL
IMRRISKGQEIRKMFAERIVVKAVVKSLAGDGAPRGTKVRTVLHEGLV*
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mRNA from alignment at Ecto-sp13_S_contig1680:401..2759+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1680.4871.1 ID=mRNA_Ecto-sp13_S_contig1680.4871.1|Name=mRNA_Ecto-sp13_S_contig1680.4871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1680:401..2759+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTAAAGGACGGCATACGCGTATGACATCATTCGGAGCGGGCCTAGGCGG
TGGAGGGGTTGAGGAGAGCAACGCGCTCCTCCTGATGATGGACTTCGAGG
ATGCAGACGTGGAAGAATTGCGCCAGTGGATTCGAAGGTGATCCGGTGGA
GCGCGTGTTGGATCTATGCGTTGTGTGTGCTTCCTTGCGCACCGCTGCCC
CCTGAGTCGTACGGGCGATGGTTGACCCGCAACATATTTCATTGCCGGAT
GAGTTGACCGCTCATGTCATCCAGCTATCCAGCTCATGCATGACTTGAGT
TTTGCTGCTTTTTTCTGTGCAGTAAAGATGCTTTCTGCGTGTGAAAATGG
CTGGCTTTGGTTGGCCGCTTTTCACGTGGGGTGGAGACATTCATGGTCGC
CTGGCATAACGAGGAAAAGAAGGCCAGCAGGCTTCGTGCGACCAGGCTGG
AGACTGAAACGACACAGCGTACACAAGCGTCTAAAGATCTCCGTTCCTGA
CCAACAACAACAACGACAGGTTGCGCTGACGTTACTCTCTGATGTGCGTG
CCCTACATGTAGTTTGACAATACTCCACTACACAGGTGCTCATCCGGATC
ATTGGTGTTCTCCTTTTCGCGCCCCTTTTCCTTCAATATCTCCTGGCAAA
GAAAGGGTCCATCTAACCTGTATCAAGTCTGACTATATTGTAAATCATAA
AGGACATCAATCTATCTTGATATTTTCAAGTGTCGGCGTTGTGCGCAAGC
TGAACAATCCCTCTACCTTGCGAGCGGCAGATACCCGTTTGGGACGGCCC
TTCCCGTGCAGCCGTTCTCCCTGGTGGAGACGGTGACTGGCGTGGATGTC
GTGTTCAGAAAGTGAGTAAAGCAGTGGTTGGGCTTGGTTTTACCATCCGT
GGTGTAAGGAGGGGATGTGGCCAGTATTAAGGGCAGGTGGACATTGCCGG
TATTACGGCGATTTGTCGGGCTATAATGGTGCCAGGTGGTTATGTGGTCA
CTATGCAGGGCACGTCGCTAAGCGTAGACTCAACTTCAACTGCAGCGAAT
CCACCACTCACTTCTGTAGGGAGAGGTTAAAGTGACACATAGCAAGTTTT
GCCGGTTTCGCTAAAGATACGTACCTGGCGCGTGTCTTGATTTTGGGTTT
ACGATTTCTGCAGCAATGCCTACTGGTACGGCGACTGCTGCAGAGCATCA
ACCCTGGTCCTCCCTCTCGCACCTGGATGCCGAACGCGCAAAGATTACTT
GTTGTGCCTGGAGTGAACCGTTACGGGACGCCTGCAGCATTTGCCCCAGG
ACTACACGGATTCAGGCGGAAAAAATGTCTTGGTGTTGCCGGGGACAAGA
GATCTGTTTTATGTGGTGTTGAACTCTGAGGAGGCTTTGTAGCGCTAACG
ACCTGAACCCCTCCGAACGCGTCGACAAGAGAGAAACATTCATGTCCGCA
GAAGCTGAAGCATGCTGTCGAAGATATCCAGAGGGAGTCATGTGGTCTTT
AGTTCCGAATGCTTTTTCAACACCCCCTATGCTTGTCAGCTAACCCTCCT
ACTATCTGGTCCTGATGGAATTGGGAGGCTACAACAAACACATCACTAGG
TACCGTTTGATGTCTTCGCGTTCGTCTGAAGCGACGGCTCCCGAAACACG
AATTCCCGCTAGATATACACCACCCTCCCGTGTTTGCTGGTCGCGGTCGC
ATGTCTGCATTCCAGAAAGCCGACTCTCGAAAGAGGCTCGCAAGACGGGG
GGCTTTGCTTCACCATTGAGGACAAGGTCTCCGGGGAAGGGATCGACATG
CCCACGGGCCCGACGCTGATCATGCGGCGCATCTCCAAAGGGCAAGAAAT
TCGGAAGGTGGCCGTTGTGTGGCAATATATGGCCTGTCTGGATGCTTGTC
AGGATGCACTTCTAGTATGCATACCCGTGTTTCAAGAGGAGGGTTTATGA
CTTAGTATTTTCCCCGGTAAACATGATAGTGCGCACACCAAAGTGTGAGT
GCCTTGGACGTCGCGGGGGTGTGGAACCCACCAATGGTTGGTCCAATTTC
GTGTGGCACTCTTAGACGGCGAATTTTGTACTCCAGTTGAACCTCTGAAT
TTACTGTTTTCGTTGCTCGCAAAGTTTGATCCATTGAGCTGTGGTGTCAA
CCTTTGAGCGCTTTGTATAGGAAATGAGACGCCTAAGCTTGTGCTATTCC
AGCAACGCGAGACTGTTTCGTTTTCTCCGCCTCGTCATCTACCAACTGCA
GATGTTCGCGGAACGCATCGTGGTGAAGGCGGTTGTCAAGTCCTTGGCGG
GGGACGGCGCGCCACGTGGGACCAAAGTCCGAACAGTTCTGCACGAGGGT
TTAGTTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1680:401..2759+

>mRNA_Ecto-sp13_S_contig1680.4871.1 ID=mRNA_Ecto-sp13_S_contig1680.4871.1|Name=mRNA_Ecto-sp13_S_contig1680.4871.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1680:401..2759+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACATCATTCGGAGCGGGCCTAGGCGGTGGAGGGGTTGAGGAGAGCAA
CGCGCTCCTCCTGATGATGGACTTCGAGGATGCAGACGTGGAAGAATTGC
GCCAGTGGATTCGAAGATACCCGTTTGGGACGGCCCTTCCCGTGCAGCCG
TTCTCCCTGGTGGAGACGGTGACTGGCGTGGATGTCGTGTTCAGAAAAAA
GCCGACTCTCGAAAGAGGCTCGCAAGACGGGGGGCTTTGCTTCACCATTG
AGGACAAGGTCTCCGGGGAAGGGATCGACATGCCCACGGGCCCGACGCTG
ATCATGCGGCGCATCTCCAAAGGGCAAGAAATTCGGAAGATGTTCGCGGA
ACGCATCGTGGTGAAGGCGGTTGTCAAGTCCTTGGCGGGGGACGGCGCGC
CACGTGGGACCAAAGTCCGAACAGTTCTGCACGAGGGTTTAGTTTAA
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