mRNA_Ecto-sp13_S_contig168.4868.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LKU6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU6_ECTSI) HSP 1 Score: 446 bits (1148), Expect = 1.360e-149 Identity = 219/267 (82.02%), Postives = 229/267 (85.77%), Query Frame = 3
Query: 507 MHDFCSKRHAKEAMAHPGGGMGASKCTLKXXXXXXXXXXXXXXXXXXXXXXXXXHAIALGQGMGTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEA 1307
MHDFCSK HA EAMA PGGGMGAS+C LK HAIALGQGM TV SHV+QVFRGGTTGATDF LSVLSKSH QYSSLCHQFI+KWVKGGVPHVRRILEVKVPADIYGKYANYK+AKGN+RRRFHGTSCSA CNFFVDLKGNPCSS+ CNVCNICTNGFMLQGNV GTA+RTSIGLRYGEGLYFSSVSGKSNDYAQGSEKV SDGK++RCMF+ANV AGNAYLTQQVSLGQNMCPPAGHDSVVGEA
Sbjct: 1 MHDFCSKHHANEAMARPGGGMGASECKLKGCSKNVYRDPVTGLESDYCSRGHQAHAIALGQGMRTVTSHVQQVFRGGTTGATDFMLSVLSKSHHQYSSLCHQFISKWVKGGVPHVRRILEVKVPADIYGKYANYKKAKGNIRRRFHGTSCSAGCNFFVDLKGNPCSSRGCNVCNICTNGFMLQGNVGGTAKRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVGSDGKKVRCMFIANVTAGNAYLTQQVSLGQNMCPPAGHDSVVGEA 267
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI) HSP 1 Score: 384 bits (986), Expect = 2.300e-126 Identity = 187/233 (80.26%), Postives = 204/233 (87.55%), Query Frame = 3
Query: 693 MGTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYALP 1391
M +SHVEQ FRGGTTGATDF LS LSK+HPQY SLCHQF++KW+K GVP V RILEVKVP DIY K YK+AKGNVRRRFHGTSCSA+CNFFVDLKGNPCSSK CNVCNICT+GF+L+ NVRGTARR + RYGEGLYFSSVSGKSNDYAQ SEKV SDGK++RCMFVANV AGNAYLTQQ SLGQ+MCPPAG+DSVVGE G GL HDELV Y++EAAIPSYLIVYALP
Sbjct: 1 MAGTQSHVEQTFRGGTTGATDFVLSALSKAHPQYPSLCHQFVSKWLKPGVPRVLRILEVKVPDDIYQKTVCYKKAKGNVRRRFHGTSCSAQCNFFVDLKGNPCSSKACNVCNICTHGFVLRDNVRGTARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDMCPPAGYDSVVGEVGSGLIHDELVAYEDEAAIPSYLIVYALP 233
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI) HSP 1 Score: 323 bits (827), Expect = 2.000e-99 Identity = 158/230 (68.70%), Postives = 187/230 (81.30%), Query Frame = 3
Query: 708 SHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVK----GGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYA 1385
++VE++F GTTG TDFKL VLSK+HP Y SL QF+ KWVK GG+ V +IL V+VPAD+ K Y++ GNVRRRFHGTSCS +CNFFVDL+GNPCS K C VC+ICT+GF LQGNV GTARRT+ GLRYGEGLYFSSVSGK+NDYA SEK S+G+RLRCMFVANVAAG A+ T + SL QN CPPAG+DSVVGE G GLN+DELVVYK+EAA+P++LIVY+
Sbjct: 225 TYVERIFHRGTTGTTDFKLCVLSKAHPHYPSLIDQFVNKWVKPEPVGGIS-VEKILTVEVPADVRRKTKTYEKTVGNVRRRFHGTSCSTKCNFFVDLRGNPCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHETSLQQNECPPAGYDSVVGEVGQGLNYDELVVYKDEAALPTHLIVYS 453
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI) HSP 1 Score: 260 bits (665), Expect = 2.110e-75 Identity = 147/313 (46.96%), Postives = 184/313 (58.79%), Query Frame = 3
Query: 459 RPGCSQPRFFDLVTHRMHDFCSKRHAKEAMAHPGGGMGASKCTLKXXXXXXXXXXXXXXXXXXXXXXXXXHAIALGQGMGTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVK---GGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
R GCS+ + D T + D+C R A E + G+G C+L A G V++ FRGGTT A DF+LSVL+ HP+Y S QF+ KW K G V RI +V+VP DI + GNV+RRFHGTSCS C FFVDL+G PC C VCNICT+GF L+ NV TARRT+ LRYG+GLYFSSVSGK+NDYA+ SEK GK++RCMF+++V G A++T + L CPP G DSVVGE G LN+ E+VVYK EAA+P++LIVYAL
Sbjct: 165 RDGCSRAAWVDEGTGGVLDYCGSRCAGEVGMNYLVGVGV--CSLPGCVNPNFVHPRDRQETGYCCEDHRLRATQRSLGPNP-EPFVDRTFRGGTTSADDFQLSVLTNRHPEYLSRKQQFMQKWEKPLVGTGVSVLRIFKVQVPKDIRRRTETCMGQVGNVQRRFHGTSCSNVCTFFVDLRGGPCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEGKLPPEQCPPPGFDSVVGEKGPALNYPEVVVYKEEAALPTHLIVYAL 474
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI) HSP 1 Score: 236 bits (601), Expect = 1.820e-66 Identity = 124/235 (52.77%), Postives = 157/235 (66.81%), Query Frame = 3
Query: 696 GTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKG----GVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
G +RS V + G F L L ++HP+ SL QF TKWVK G+ VR I V+VPA++ K+ Y + N+RRRFHGTSCS CNF VD + +PC + C++CNI GF L NV TA + LRYG+G+YFSSVSGK+NDYA + K + DG +LRCMFVANVAAG AY T++ +L CPP G++SVVGE G GLN+DELVVYK EAA+P++LIVYAL
Sbjct: 215 GQLRSSEPYVHGVYSVGTPRFNLCALDEAHPECPSLRSQFSTKWVKPQPAEGISVVR-IFRVEVPAEVRDKHDKYARTVRNIRRRFHGTSCSDGCNFIVDPQRSPCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKALDDGKCPPPGYESVVGEVGQGLNYDELVVYKEEAALPTHLIVYAL 448
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.520e-58 Identity = 108/221 (48.87%), Postives = 142/221 (64.25%), Query Frame = 3
Query: 744 GATDFKLSVLSKSHPQYSSLCHQFITKWVKG----GVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGN--PCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
G+++ L +L ++ +Y++L F +W+K GV + R+ ++V ++ K+ YK GN+ +RFHGTSC+ CNF VD +G PC C+VCNIC GF L NV GTAR T + LRYGEG+Y +SVSGK+NDYA S K LRCMFVA+VA G A+ T+ L N CPP G+ SVVGE G GLN DE VVY EAA+P++LIVYAL
Sbjct: 11 GSSESVLQMLEENSREYTALRGLFNARWMKPRPAKGVS-IERVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPANQCPPPGYQSVVGEVGQGLNFDEFVVYNEEAALPTHLIVYAL 230
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI) HSP 1 Score: 216 bits (551), Expect = 2.810e-57 Identity = 116/223 (52.02%), Postives = 150/223 (67.26%), Query Frame = 3
Query: 738 TTGATDFKLSVLSKSHPQYSSLCHQFITKWVK----GGVPHVRRILEVKVPADIYGKYANYKQ-AKGNVRRRFHGTSCSARCNFFVDLKGN--PCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYA 1385
+ G++ L +L +Y +LC F T+W+K GV VR I ++VP +++ K+ YK+ N+R+RFHGTSC+ CNF VD +G PC C+VCNIC GF L NV TAR + I LRYG G+YFSSVSGK+NDYA+ S K SDG LRCMFVANVA G A+ T++ L Q+ CPP+G SVVGE G LN+DE+VVYK EAA+P++LIVYA
Sbjct: 454 SVGSSSSTLRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVR-IFSIQVPLEVHDKHELYKRMVVVNLRQRFHGTSCNDGCNFMVDPQGATAPCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKSHLPQSECPPSGCQSVVGEVGHALNYDEVVVYKEEAALPTHLIVYA 675
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D7FMJ6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ6_ECTSI) HSP 1 Score: 214 bits (544), Expect = 5.690e-57 Identity = 112/218 (51.38%), Postives = 136/218 (62.39%), Query Frame = 3
Query: 735 GTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
G +G + F+L L +SH +Y S+ QF +KW KG VP V I +K+P + KY YK GN RRRFHGTS ++ C+FF K PCSS+ C CNIC GF L G + + RYG GLYFSSVSGKSNDYA GSE+ +G R R MF+ NVA G A +T+ V L + CP G DSVVG G LNHDE VVY AAIPSY+IVY +
Sbjct: 381 GGSGGSGFRLQELDRSHQKYESVKTQFTSKWQKGNVPTVENIFLIKMPMGVVDKYLAYKNRVGNERRRFHGTSRASDCDFFTGSKKQPCSSRTCVACNICMVGFKLVGTTKKSY------ARYGRGLYFSSVSGKSNDYADGSEQ-RRNGARYRTMFLCNVAVGKAKVTEAVDLPDDQCPGKGFDSVVGNKGANLNHDETVVYDEAAAIPSYMIVYRM 591
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: A0A813I6I7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6I7_POLGL) HSP 1 Score: 210 bits (534), Expect = 6.520e-57 Identity = 115/236 (48.73%), Postives = 150/236 (63.56%), Query Frame = 3
Query: 708 SHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKG--GVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFML--QGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGK----RLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYALP 1391
S V++V GG+ DF + +L + HP Y+++ QF++ W K G P V R+L+++ +I +A Y QA GNVRRRFHGTS S C F + PCS K+C VC IC F L G G R TS LRYG GLYFS+ SGKSNDYA+GSE++ + + R RCMFV +VA G A+LT + L Q CPP G+D+VVGE G LN DE+VVY AA+PS+L+VY+LP
Sbjct: 216 STVDRVLLGGSG---DFCVELLRRQHPDYAAVKQQFLSSWRKSEQGPPRVERLLKIRSALEIREAFAEYAQAVGNVRRRFHGTSQSESCTFGTHPEKAPCSDKKCRVCCICRRTFSLLHAGETFGGPRNTSA-LRYGPGLYFSATSGKSNDYAEGSERMKHEARGAQRRWRCMFVCHVAIGKAHLTTEGWLPQQQCPPPGYDAVVGEVGENLNFDEVVVYDEAAAVPSFLVVYSLP 447
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D7FXR1_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR1_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.080e-53 Identity = 97/175 (55.43%), Postives = 117/175 (66.86%), Query Frame = 3
Query: 870 KVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGN--PCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
+V ++ ++ YK GN+ +RFHGTSC+ CNF VD +G PC C+VCNIC GF L NV GTAR T LRYGEG+Y +SVSGK+NDYA S K + LRCMFVANVA G + T+ SL N CPP G+ SVVGE G GLN DE VVY EAA+P++LIVYAL
Sbjct: 55 EVSREVREEHERYKGKFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGFPLRYGEGVYLTSVSGKANDYASRSAKKIGNDSELRCMFVANVAVGRTFKTKSTSLPANQCPPPGYQSVVGEVGRGLNFDEFVVYDEEAALPTHLIVYAL 229 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig168.4868.1 >prot_Ecto-sp13_S_contig168.4868.1 ID=prot_Ecto-sp13_S_contig168.4868.1|Name=mRNA_Ecto-sp13_S_contig168.4868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp MLGLSTRQRPGCSQPRFFDLVTHRMHDFCSKRHAKEAMAHPGGGMGASKCback to top mRNA from alignment at Ecto-sp13_S_contig168:6662..11037- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig168.4868.1 ID=mRNA_Ecto-sp13_S_contig168.4868.1|Name=mRNA_Ecto-sp13_S_contig168.4868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig168:6662..11037- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig168:6662..11037- >mRNA_Ecto-sp13_S_contig168.4868.1 ID=mRNA_Ecto-sp13_S_contig168.4868.1|Name=mRNA_Ecto-sp13_S_contig168.4868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig168:6662..11037- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |