mRNA_Ecto-sp13_S_contig168.4868.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig168.4868.1
Unique NamemRNA_Ecto-sp13_S_contig168.4868.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LKU6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU6_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 1.360e-149
Identity = 219/267 (82.02%), Postives = 229/267 (85.77%), Query Frame = 3
Query:  507 MHDFCSKRHAKEAMAHPGGGMGASKCTLKXXXXXXXXXXXXXXXXXXXXXXXXXHAIALGQGMGTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEA 1307
            MHDFCSK HA EAMA PGGGMGAS+C LK                         HAIALGQGM TV SHV+QVFRGGTTGATDF LSVLSKSH QYSSLCHQFI+KWVKGGVPHVRRILEVKVPADIYGKYANYK+AKGN+RRRFHGTSCSA CNFFVDLKGNPCSS+ CNVCNICTNGFMLQGNV GTA+RTSIGLRYGEGLYFSSVSGKSNDYAQGSEKV SDGK++RCMF+ANV AGNAYLTQQVSLGQNMCPPAGHDSVVGEA
Sbjct:    1 MHDFCSKHHANEAMARPGGGMGASECKLKGCSKNVYRDPVTGLESDYCSRGHQAHAIALGQGMRTVTSHVQQVFRGGTTGATDFMLSVLSKSHHQYSSLCHQFISKWVKGGVPHVRRILEVKVPADIYGKYANYKKAKGNIRRRFHGTSCSAGCNFFVDLKGNPCSSRGCNVCNICTNGFMLQGNVGGTAKRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVGSDGKKVRCMFIANVTAGNAYLTQQVSLGQNMCPPAGHDSVVGEA 267          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LKU8_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU8_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 2.300e-126
Identity = 187/233 (80.26%), Postives = 204/233 (87.55%), Query Frame = 3
Query:  693 MGTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYALP 1391
            M   +SHVEQ FRGGTTGATDF LS LSK+HPQY SLCHQF++KW+K GVP V RILEVKVP DIY K   YK+AKGNVRRRFHGTSCSA+CNFFVDLKGNPCSSK CNVCNICT+GF+L+ NVRGTARR +   RYGEGLYFSSVSGKSNDYAQ SEKV SDGK++RCMFVANV AGNAYLTQQ SLGQ+MCPPAG+DSVVGE G GL HDELV Y++EAAIPSYLIVYALP
Sbjct:    1 MAGTQSHVEQTFRGGTTGATDFVLSALSKAHPQYPSLCHQFVSKWLKPGVPRVLRILEVKVPDDIYQKTVCYKKAKGNVRRRFHGTSCSAQCNFFVDLKGNPCSSKACNVCNICTHGFVLRDNVRGTARRANYRRRYGEGLYFSSVSGKSNDYAQQSEKVGSDGKKVRCMFVANVTAGNAYLTQQGSLGQDMCPPAGYDSVVGEVGSGLIHDELVAYEDEAAIPSYLIVYALP 233          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LS87_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS87_ECTSI)

HSP 1 Score: 323 bits (827), Expect = 2.000e-99
Identity = 158/230 (68.70%), Postives = 187/230 (81.30%), Query Frame = 3
Query:  708 SHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVK----GGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYA 1385
            ++VE++F  GTTG TDFKL VLSK+HP Y SL  QF+ KWVK    GG+  V +IL V+VPAD+  K   Y++  GNVRRRFHGTSCS +CNFFVDL+GNPCS K C VC+ICT+GF LQGNV GTARRT+ GLRYGEGLYFSSVSGK+NDYA  SEK  S+G+RLRCMFVANVAAG A+ T + SL QN CPPAG+DSVVGE G GLN+DELVVYK+EAA+P++LIVY+
Sbjct:  225 TYVERIFHRGTTGTTDFKLCVLSKAHPHYPSLIDQFVNKWVKPEPVGGIS-VEKILTVEVPADVRRKTKTYEKTVGNVRRRFHGTSCSTKCNFFVDLRGNPCSDKGCKVCSICTHGFTLQGNVGGTARRTNFGLRYGEGLYFSSVSGKANDYADFSEKTDSNGRRLRCMFVANVAAGKAFKTHETSLQQNECPPAGYDSVVGEVGQGLNYDELVVYKDEAALPTHLIVYS 453          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LS86_ECTSI (PARP catalytic domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS86_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 2.110e-75
Identity = 147/313 (46.96%), Postives = 184/313 (58.79%), Query Frame = 3
Query:  459 RPGCSQPRFFDLVTHRMHDFCSKRHAKEAMAHPGGGMGASKCTLKXXXXXXXXXXXXXXXXXXXXXXXXXHAIALGQGMGTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVK---GGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
            R GCS+  + D  T  + D+C  R A E   +   G+G   C+L                           A     G       V++ FRGGTT A DF+LSVL+  HP+Y S   QF+ KW K   G    V RI +V+VP DI  +        GNV+RRFHGTSCS  C FFVDL+G PC    C VCNICT+GF L+ NV  TARRT+  LRYG+GLYFSSVSGK+NDYA+ SEK    GK++RCMF+++V  G A++T +  L    CPP G DSVVGE G  LN+ E+VVYK EAA+P++LIVYAL
Sbjct:  165 RDGCSRAAWVDEGTGGVLDYCGSRCAGEVGMNYLVGVGV--CSLPGCVNPNFVHPRDRQETGYCCEDHRLRATQRSLGPNP-EPFVDRTFRGGTTSADDFQLSVLTNRHPEYLSRKQQFMQKWEKPLVGTGVSVLRIFKVQVPKDIRRRTETCMGQVGNVQRRFHGTSCSNVCTFFVDLRGGPCGESTCKVCNICTHGFQLRDNVGDTARRTNFDLRYGDGLYFSSVSGKANDYAELSEKTDRSGKKVRCMFLSSVTVGRAFITYEGKLPPEQCPPPGFDSVVGEKGPALNYPEVVVYKEEAALPTHLIVYAL 474          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LS88_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS88_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 1.820e-66
Identity = 124/235 (52.77%), Postives = 157/235 (66.81%), Query Frame = 3
Query:  696 GTVRSHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKG----GVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
            G +RS    V    + G   F L  L ++HP+  SL  QF TKWVK     G+  VR I  V+VPA++  K+  Y +   N+RRRFHGTSCS  CNF VD + +PC  + C++CNI   GF L  NV  TA   +  LRYG+G+YFSSVSGK+NDYA  + K + DG +LRCMFVANVAAG AY T++ +L    CPP G++SVVGE G GLN+DELVVYK EAA+P++LIVYAL
Sbjct:  215 GQLRSSEPYVHGVYSVGTPRFNLCALDEAHPECPSLRSQFSTKWVKPQPAEGISVVR-IFRVEVPAEVRDKHDKYARTVRNIRRRFHGTSCSDGCNFIVDPQRSPCGLRSCSLCNISMRGFKLDENVGRTALARNFNLRYGKGVYFSSVSGKANDYADLTAKTAKDGTKLRCMFVANVAAGKAYSTKEKALDDGKCPPPGYESVVGEVGQGLNYDELVVYKEEAALPTHLIVYAL 448          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: A0A6H5JBF5_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF5_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 1.520e-58
Identity = 108/221 (48.87%), Postives = 142/221 (64.25%), Query Frame = 3
Query:  744 GATDFKLSVLSKSHPQYSSLCHQFITKWVKG----GVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGN--PCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
            G+++  L +L ++  +Y++L   F  +W+K     GV  + R+  ++V  ++  K+  YK   GN+ +RFHGTSC+  CNF VD +G   PC    C+VCNIC  GF L  NV GTAR T + LRYGEG+Y +SVSGK+NDYA  S K       LRCMFVA+VA G A+ T+   L  N CPP G+ SVVGE G GLN DE VVY  EAA+P++LIVYAL
Sbjct:   11 GSSESVLQMLEENSREYTALRGLFNARWMKPRPAKGVS-IERVYSIQVSREMREKHERYKGMFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGVPLRYGEGIYLTSVSGKANDYASRSAKKIGIASELRCMFVASVAVGRAFKTKSTRLPANQCPPPGYQSVVGEVGQGLNFDEFVVYNEEAALPTHLIVYAL 230          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D8LKU5_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU5_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 2.810e-57
Identity = 116/223 (52.02%), Postives = 150/223 (67.26%), Query Frame = 3
Query:  738 TTGATDFKLSVLSKSHPQYSSLCHQFITKWVK----GGVPHVRRILEVKVPADIYGKYANYKQ-AKGNVRRRFHGTSCSARCNFFVDLKGN--PCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYA 1385
            + G++   L +L     +Y +LC  F T+W+K     GV  VR I  ++VP +++ K+  YK+    N+R+RFHGTSC+  CNF VD +G   PC    C+VCNIC  GF L  NV  TAR + I LRYG G+YFSSVSGK+NDYA+ S K  SDG  LRCMFVANVA G A+ T++  L Q+ CPP+G  SVVGE G  LN+DE+VVYK EAA+P++LIVYA
Sbjct:  454 SVGSSSSTLRILDDDDWEYEALCDLFKTRWLKPQPTNGVSIVR-IFSIQVPLEVHDKHELYKRMVVVNLRQRFHGTSCNDGCNFMVDPQGATAPCGLSSCSVCNICMLGFKLGKNVARTARASGIPLRYGTGIYFSSVSGKANDYARLSAKTGSDGAELRCMFVANVAGGKAFSTKKSHLPQSECPPSGCQSVVGEVGHALNYDEVVVYKEEAALPTHLIVYA 675          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D7FMJ6_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMJ6_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 5.690e-57
Identity = 112/218 (51.38%), Postives = 136/218 (62.39%), Query Frame = 3
Query:  735 GTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
            G +G + F+L  L +SH +Y S+  QF +KW KG VP V  I  +K+P  +  KY  YK   GN RRRFHGTS ++ C+FF   K  PCSS+ C  CNIC  GF L G  + +        RYG GLYFSSVSGKSNDYA GSE+   +G R R MF+ NVA G A +T+ V L  + CP  G DSVVG  G  LNHDE VVY   AAIPSY+IVY +
Sbjct:  381 GGSGGSGFRLQELDRSHQKYESVKTQFTSKWQKGNVPTVENIFLIKMPMGVVDKYLAYKNRVGNERRRFHGTSRASDCDFFTGSKKQPCSSRTCVACNICMVGFKLVGTTKKSY------ARYGRGLYFSSVSGKSNDYADGSEQ-RRNGARYRTMFLCNVAVGKAKVTEAVDLPDDQCPGKGFDSVVGNKGANLNHDETVVYDEAAAIPSYMIVYRM 591          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: A0A813I6I7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I6I7_POLGL)

HSP 1 Score: 210 bits (534), Expect = 6.520e-57
Identity = 115/236 (48.73%), Postives = 150/236 (63.56%), Query Frame = 3
Query:  708 SHVEQVFRGGTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKG--GVPHVRRILEVKVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNICTNGFML--QGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGK----RLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYALP 1391
            S V++V  GG+    DF + +L + HP Y+++  QF++ W K   G P V R+L+++   +I   +A Y QA GNVRRRFHGTS S  C F    +  PCS K+C VC IC   F L   G   G  R TS  LRYG GLYFS+ SGKSNDYA+GSE++  + +    R RCMFV +VA G A+LT +  L Q  CPP G+D+VVGE G  LN DE+VVY   AA+PS+L+VY+LP
Sbjct:  216 STVDRVLLGGSG---DFCVELLRRQHPDYAAVKQQFLSSWRKSEQGPPRVERLLKIRSALEIREAFAEYAQAVGNVRRRFHGTSQSESCTFGTHPEKAPCSDKKCRVCCICRRTFSLLHAGETFGGPRNTSA-LRYGPGLYFSATSGKSNDYAEGSERMKHEARGAQRRWRCMFVCHVAIGKAHLTTEGWLPQQQCPPPGYDAVVGEVGENLNFDEVVVYDEAAAVPSFLVVYSLP 447          
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Match: D7FXR1_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR1_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.080e-53
Identity = 97/175 (55.43%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  870 KVPADIYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGN--PCSSKECNVCNICTNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDGKRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDELVVYKNEAAIPSYLIVYAL 1388
            +V  ++  ++  YK   GN+ +RFHGTSC+  CNF VD +G   PC    C+VCNIC  GF L  NV GTAR T   LRYGEG+Y +SVSGK+NDYA  S K   +   LRCMFVANVA G  + T+  SL  N CPP G+ SVVGE G GLN DE VVY  EAA+P++LIVYAL
Sbjct:   55 EVSREVREEHERYKGKFGNLCQRFHGTSCNEGCNFMVDPQGGQAPCGKSSCSVCNICKLGFKLGANVAGTARATGFPLRYGEGVYLTSVSGKANDYASRSAKKIGNDSELRCMFVANVAVGRTFKTKSTSLPANQCPPPGYQSVVGEVGRGLNFDEFVVYDEEAALPTHLIVYAL 229          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig168.4868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKU6_ECTSI1.360e-14982.02PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU8_ECTSI2.300e-12680.26PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS87_ECTSI2.000e-9968.70PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LS86_ECTSI2.110e-7546.96PARP catalytic domain-containing protein n=2 Tax=E... [more]
D8LS88_ECTSI1.820e-6652.77PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JBF5_9PHAE1.520e-5848.87PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LKU5_ECTSI2.810e-5752.02TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
D7FMJ6_ECTSI5.690e-5751.38PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A813I6I7_POLGL6.520e-5748.73Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D7FXR1_ECTSI1.080e-5355.43PARP catalytic domain-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig168contigEcto-sp13_S_contig168:6662..11037 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score323.9
Seed ortholog evalue8.2e-86
Seed eggNOG ortholog2880.D8LS87
Model size2172
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs28J37@1,2S14A@2759
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-11_005620.1
Cds size960
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig168.4868.1prot_Ecto-sp13_S_contig168.4868.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig168 7440..10603 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.851199-UTR-Ecto-sp13_S_contig168:6661..74391681462880.851199-UTR-Ecto-sp13_S_contig168:6661..7439Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig168 6662..7439 -
1681462880.914225-UTR-Ecto-sp13_S_contig168:10603..110371681462880.914225-UTR-Ecto-sp13_S_contig168:10603..11037Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig168 10604..11037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462880.8643408-CDS-Ecto-sp13_S_contig168:7439..75291681462880.8643408-CDS-Ecto-sp13_S_contig168:7439..7529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig168 7440..7529 -
1681462880.8725455-CDS-Ecto-sp13_S_contig168:7999..81341681462880.8725455-CDS-Ecto-sp13_S_contig168:7999..8134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig168 8000..8134 -
1681462880.8804014-CDS-Ecto-sp13_S_contig168:8394..85741681462880.8804014-CDS-Ecto-sp13_S_contig168:8394..8574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig168 8395..8574 -
1681462880.890585-CDS-Ecto-sp13_S_contig168:8933..90501681462880.890585-CDS-Ecto-sp13_S_contig168:8933..9050Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig168 8934..9050 -
1681462880.898607-CDS-Ecto-sp13_S_contig168:9697..99341681462880.898607-CDS-Ecto-sp13_S_contig168:9697..9934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig168 9698..9934 -
1681462880.906513-CDS-Ecto-sp13_S_contig168:10402..106031681462880.906513-CDS-Ecto-sp13_S_contig168:10402..10603Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig168 10403..10603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig168.4868.1

>prot_Ecto-sp13_S_contig168.4868.1 ID=prot_Ecto-sp13_S_contig168.4868.1|Name=mRNA_Ecto-sp13_S_contig168.4868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=320bp
MLGLSTRQRPGCSQPRFFDLVTHRMHDFCSKRHAKEAMAHPGGGMGASKC
TLKGCFKDVYRDLITGLESDYCSRGHQAHAIALGQGMGTVRSHVEQVFRG
GTTGATDFKLSVLSKSHPQYSSLCHQFITKWVKGGVPHVRRILEVKVPAD
IYGKYANYKQAKGNVRRRFHGTSCSARCNFFVDLKGNPCSSKECNVCNIC
TNGFMLQGNVRGTARRTSIGLRYGEGLYFSSVSGKSNDYAQGSEKVSSDG
KRLRCMFVANVAAGNAYLTQQVSLGQNMCPPAGHDSVVGEAGGGLNHDEL
VVYKNEAAIPSYLIVYALP*
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mRNA from alignment at Ecto-sp13_S_contig168:6662..11037-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig168.4868.1 ID=mRNA_Ecto-sp13_S_contig168.4868.1|Name=mRNA_Ecto-sp13_S_contig168.4868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig168:6662..11037- (Ectocarpus species13 EcNAP12_S_4_19m)
TAGTGTGGAGACCACCTTCATAAAGGTACAATCTCCCCAACACCTGTCGA TGACGGTTCCCTCTTTTCACACTTTCCCCAATCAAAGTCCTTCCAAACAC AATCAGTGAACAGAGATGACAGCCTTGCAGTCTTTACAATGGTATGAGCA GACCGAAGCAAGATATCGGCGGCGGAAGTTTTCTCTGCATTTCTTAATGG TTCCGGCAGCCCCCTGAACACCGGTCACCCGTCACTGGCAGAGTCACAAC GCACGACGATGCTACGGTGCTGCTTAAAGGCCCCCACGACAGCGATGTGT CTACCAAACAGAGTGTGTATCGTAGTCCCAACATGTTCCAACAAGCCTCC CTCTACAGTCCAACATCAACGCCACCTCCGCGAGCTCGCTTCATCTCATG AAATGTGTGCTACGTGTGTGAGCCTATTCTTGTCATGCTTGGTCTTTCCA CTCGCCAGCGACCTGGGTGCTCGCAACCACGTTTCTTCGACTTAGTCACG CACCGGATGCACGACTTCTGCTCGAAGCGCCACGCTAAAGAGGCCATGGC ACACCCGGGTGGTGGCATGGGGGCTTCAAAGTGCACGCTGAAGGGCTGTT TTAAGGACGTTTACCGCGATCTCATCACCGGTCTCGTAAGTGTTAACGGT CTTTATTTTCTTTGTAGAGCTAACTCTTATCACGTTGATACTACTAATGT TGCTTCGTTTGGCGTCTTCGGCATTAGCGGCAGCCGGATCGAACAATAGC TGCCAGTACGCGGTATTCCGGTCATGGTGACAAGCCATTCGACTGTGGGT ATCTCGAATGGATAGTCTCTTTCTGTGTGTGTATTTTTGTTTCTATAAGT CGATGGGTCGTCCCCTCAACGGTATCGTCCATTCTTTTGTTTGAGGGATA TTCTGACTTGGGGGCACCACATAGTTCGGAATAGAATAGTAATGGTCCAC ATGGCGTCAGTGGAAGCTACCTGTGTGTATTTGTACCCCCGCCGTACGTA CGTGCGCAAGTGAAGACTCAACACCTGTCCTCTTCCTATCGTCTCACCAC GCTCCCCCTCTTCACCTCATTCGGCCCACCCGCTATTTTGGCGACAACCC AAGGAGTCTGACTACTGCTCCAGAGGTCACCAGGCACACGCCATCGCCCT GGGACAGGGAATGGGGACCGTAAGGTCCCATGTGGAGCAGGTGTTCCGCG GGGGAACCACCGGCGCTACTGACTTCAAGCTGAGTGTCCTTTCGAAATCC CATCCTCAGTACTCGTCGCTGTGCCATCAATTCATCACCAAGTGGGTCAA GGGTGGCGTGCCTCACGTGCGGAGGATATTGGAGGTGAAGGTGAGTAAAA CAGTACACGAACGAACACACTGAATGGTTCCTTCTCACCTTTAATTCACT CTCTGTTTGGTGCACAACAGTAGTTGGCTGGTTGGTGTTGAAGTCGGATG TTGATCCAACAGTACCAAAGTACGGCAAGGGAGGCTGAGTCCAGCCTTGT GAAGAATCAAGTTGCTAGGTTCCATCGAACGCTCGGTGCCGCTTGCTCTT GATGAAGCCTTCCAAGACTTCCAAGGGGAGCCTCCCAGCGACTCTGTGAC TGAGGTGGTGGCTCGTTCTGGCGATCAAGTGCCACCTTCCCTGACTAACG TGGTCACTTGAGGTAACCCGTGCAGTAGAACACCAACATCACCACGGCAC TGGTCTCTACTGAACATAGGCCTACATCTTTTCCCGATATTGACACACCA TTCATCTTGGTGTGCCCCACGCATGTGAGGAAGGAACGAATAGGCAGAGA CGGCAGGACCCCACTCGTGTTGGATGTTAAACCGATGTTCTGTTGGAGAG TAAAAGCTCCATGTCCCCAACTAGCGTAGAACAACAGGAATACGTTCAAC ATTGATCCTGGTTGCACTTTATCCTCTGGTATTGTCTCTCCTGGTGATAT CTACTTACACCACCGCACCGTCGCATCCACATCGCAGGTACCAGCCGACA TCTATGGAAAATATGCCAACTACAAGCAGGCCAAGGGCAACGTTCGGCGT CGCTTCCACGGCACCTCGTGCTCTGCACGGTGTAACTTTTTCGTCGACCT GAAAGTGAGCAAACACGACACCACATGCTACTTCTCCTTGTCAAACGTAT CAGCCTTCCGACACAGCGGCTGCGTCTGAAACAACTCGCCGTTTTGGGCC ATACCGGGCTTCTTTCAAACACTTCGGTCTATGAGCGATACGTCCGTATT CCAATGCCGAAGTGTCTTGGTGCCCTCGAGCATAGTATCGTGGTTCCACC TGTTGGAATCGAATGTACCTACGCATTGCGGGGTTATCGCGGGGTTCTTC GATAGTGTAAGGACATTGCACAACGTATATGCAGGTTTTGTGTGGCCTCT TGTCAAGCCTTGATAATATGCGCTCACGTCTAGCACGTTTGTTTGTCGGG GCACATTTCTCAGGGGAACCCTTGCAGCAGCAAGGAATGCAACGTGTGCA ACATCTGCACCAACGGCTTCATGCTGCAAGGAAACGTCCGCGGAACGGCG AGAAGGACAAGCATCGGTCTGCGCTATGGGGAGGGCCTGTATTTCAGCAG CGTGTCTGGCAAGTCTAACGACTACGCCCAGGGGTCCGAGAAAGTGCGTA AGGGTTTGGTTGCGCTGGGCTACATCGTGTTCATCGACGAAGTTTCAGCG CCACTCTGGTTTCCAAGATGAATGTTGGATCGGCCACAATCAACTGAACT GTATGACGCTTGACGATCACCATAAACACCCGCTTGTGCCCTACCTATCT CGAACGATGTCTCGCCGACTCACAGATCAGACTGCTTACCGCGCCCCCGC CCCCTCGTCGCCGTGTCGTTGCCCCACACCAACTATCGTTGGGCGACTCG CAGGTTAGCAGCGACGGTAAACGGCTGAGGTGCATGTTCGTCGCCAACGT CGCGGCGGGCAACGCCTACCTGACCCAGCAAGTTTCCCTCGGGCAAAACA TGTGCCCTCCCGCCGGACACGACTCGGTTGTGGGCGAGGTGAGAGTCGAA GACGCTCTGTCTATCGGGGTCCCGCTGTCTCTAGGGAAACGTGAAATCCC GTACATCGAGTCGCCCTATCACAGAGAGAGCAACCCGGAACCCTGTTCTT AAAGTGCATCGGCAAGCTATTTCGGGAAGGAGGAGTGTCTTGGTGTGTTT AGGAGAACTCGATTGATTGATCAGACTAGCCGCGTGAGTGACACCAAATC TCGACAAATCGCTCACTGTAGCATCGTATACAGGATGGTAAGAATGGTTG GGGGAGCATGCCCAATCTTGCACTTGCTTGTGTGGACAAGGAATTTCGTT GTCACCGTCGCTATGTATTGATCGTACACAGAGACAGCCAGTAACACCGT ATAATTGTATGGCGTTCGGGCGAATCAGCCGTTTTTCTACATCATCACCT GATAAGGCCGTACCTCTCTCTCTGGTTGTCCTCTCACCACCCCTTTATTG ACCATCAGGCGGGAGGCGGACTGAATCATGACGAGCTGGTGGTATACAAG AACGAAGCGGCGATTCCTTCCTATCTGATCGTATACGCTCTGCCCTGAAG GAAGATTATTTGTGGTGGCCTTCTCGAATAGATTGTCGGCGGCCGACCAT GTTTGGCTCGCGGGCTTCGCACAAATTTAGTCTATTTGCTTTTCGAATTT TGACGTGCGCTTAGCAGTCCTAATCATTGTTACGAGCTCACCTGTCCTGG CGCGGAATACTCCCTGACTGGCGCTTTGCAGAGTTTCTTTCTATCTCGAG GTAGCTGCTTGGTGCGCGCTGCTTCCTCTTGTGCGAGCTTTTCTTTCGTC GAACTATTTAGTGCTTGCATGTCACCTGTTGATGCTCGTGTAGGTCTGTT GAGAGGTGTGTATTATTGAGGGGCTAGAGTTGAGGTTTTCGGGGGACGGC GCAAACCCTGTCCAAGTTTGTTGCCATCTTTGCTGCATGCAGTGATGAGG CGATTATTTCGGAATGCCATATTCTATGTAGGTATGTTCAGTGGCGTTGA ACCTGCGAAGTGGACACTGTTGAGGAGTATTTGCAGCTCCTGGTCACCGG GAACGGCCCATGGACGATGGGTGTAAGGCCCGTGGTTTTCCTCTGGGGCT TCTTCGTTCCTCGTCATTCACGACACGAGGGACTGTTCAAAATCTACCAA TATAGATGAGAGTGTTTGACAGTTTCATTGAATGTGCATTGGCATGGTCT TGTTTGTCTTAAGTGTGATTTCACTCCATTACGAGTACCGCACAATGGCC CTGGCACGTGTGTATCTGGCGACTGCTGCGAAAAAGTGTATAGCTGAAAC TCTTTCAGAATTATGTATGTATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig168:6662..11037-

>mRNA_Ecto-sp13_S_contig168.4868.1 ID=mRNA_Ecto-sp13_S_contig168.4868.1|Name=mRNA_Ecto-sp13_S_contig168.4868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig168:6662..11037- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGGTCTTTCCACTCGCCAGCGACCTGGGTGCTCGCAACCACGTTT
CTTCGACTTAGTCACGCACCGGATGCACGACTTCTGCTCGAAGCGCCACG
CTAAAGAGGCCATGGCACACCCGGGTGGTGGCATGGGGGCTTCAAAGTGC
ACGCTGAAGGGCTGTTTTAAGGACGTTTACCGCGATCTCATCACCGGTCT
CGAGTCTGACTACTGCTCCAGAGGTCACCAGGCACACGCCATCGCCCTGG
GACAGGGAATGGGGACCGTAAGGTCCCATGTGGAGCAGGTGTTCCGCGGG
GGAACCACCGGCGCTACTGACTTCAAGCTGAGTGTCCTTTCGAAATCCCA
TCCTCAGTACTCGTCGCTGTGCCATCAATTCATCACCAAGTGGGTCAAGG
GTGGCGTGCCTCACGTGCGGAGGATATTGGAGGTGAAGGTACCAGCCGAC
ATCTATGGAAAATATGCCAACTACAAGCAGGCCAAGGGCAACGTTCGGCG
TCGCTTCCACGGCACCTCGTGCTCTGCACGGTGTAACTTTTTCGTCGACC
TGAAAGGGAACCCTTGCAGCAGCAAGGAATGCAACGTGTGCAACATCTGC
ACCAACGGCTTCATGCTGCAAGGAAACGTCCGCGGAACGGCGAGAAGGAC
AAGCATCGGTCTGCGCTATGGGGAGGGCCTGTATTTCAGCAGCGTGTCTG
GCAAGTCTAACGACTACGCCCAGGGGTCCGAGAAAGTTAGCAGCGACGGT
AAACGGCTGAGGTGCATGTTCGTCGCCAACGTCGCGGCGGGCAACGCCTA
CCTGACCCAGCAAGTTTCCCTCGGGCAAAACATGTGCCCTCCCGCCGGAC
ACGACTCGGTTGTGGGCGAGGCGGGAGGCGGACTGAATCATGACGAGCTG
GTGGTATACAAGAACGAAGCGGCGATTCCTTCCTATCTGATCGTATACGC
TCTGCCCTGA
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