mRNA_Ecto-sp13_S_contig16773.4848.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16773.4848.1
Unique NamemRNA_Ecto-sp13_S_contig16773.4848.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16773.4848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16773contigEcto-sp13_S_contig16773:1672..2210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size539
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.6045325-UTR-Ecto-sp13_S_contig16773:1671..18321681462879.6045325-UTR-Ecto-sp13_S_contig16773:1671..1832Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16773 1672..1832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.6154423-CDS-Ecto-sp13_S_contig16773:1832..22101681462879.6154423-CDS-Ecto-sp13_S_contig16773:1832..2210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16773 1833..2210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16773.4848.1prot_Ecto-sp13_S_contig16773.4848.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16773 1833..2210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16773.4848.1

>prot_Ecto-sp13_S_contig16773.4848.1 ID=prot_Ecto-sp13_S_contig16773.4848.1|Name=mRNA_Ecto-sp13_S_contig16773.4848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
METPVLRYRHTNGPVCPICNKDTSTLRATSSIINAGIVDSSHAETDGVLR
LQIPCLESLTVRPRPILYARATKVQSDCNQTAPFLIASEPSGLEHAHSSL
TLLFMFDLLPSRRRCSRVTRPLPKPL
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mRNA from alignment at Ecto-sp13_S_contig16773:1672..2210+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16773.4848.1 ID=mRNA_Ecto-sp13_S_contig16773.4848.1|Name=mRNA_Ecto-sp13_S_contig16773.4848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=539bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16773:1672..2210+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGAAGAAACGAATTGTTACTACCTGGCGTCCCTAACTGTACGCCCGA
GCAAGCCAACTGCCCCGTCATTTTACTCCTGAAACAAACAATTTTTTCTA
TCTGGCGTCCCTGACTGTACGCCCGAGCAATCGAAGTGCCCCATTTCTGC
CGACACACGACATGGAAACGCCTGTGCTGCGTTACCGCCACACAAACGGG
CCTGTCTGCCCAATTTGCAATAAAGACACGTCTACACTTCGTGCCACCTC
ATCAATTATCAACGCAGGCATAGTTGATTCATCACACGCGGAGACAGATG
GAGTCCTTCGACTGCAAATTCCCTGCCTGGAGTCCCTGACTGTACGCCCG
CGTCCCATACTGTACGCCCGGGCAACCAAAGTGCAATCAGACTGCAATCA
AACTGCCCCGTTTCTTATAGCTTCCGAACCATCTGGTCTCGAGCACGCCC
ATTCATCACTCACTCTGCTTTTCATGTTTGATCTTTTACCGAGTCGACGT
CGCTGCTCTCGGGTGACTCGACCACTGCCAAAACCGCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16773:1672..2210+

>mRNA_Ecto-sp13_S_contig16773.4848.1 ID=mRNA_Ecto-sp13_S_contig16773.4848.1|Name=mRNA_Ecto-sp13_S_contig16773.4848.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16773:1672..2210+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAACGCCTGTGCTGCGTTACCGCCACACAAACGGGCCTGTCTGCCC
AATTTGCAATAAAGACACGTCTACACTTCGTGCCACCTCATCAATTATCA
ACGCAGGCATAGTTGATTCATCACACGCGGAGACAGATGGAGTCCTTCGA
CTGCAAATTCCCTGCCTGGAGTCCCTGACTGTACGCCCGCGTCCCATACT
GTACGCCCGGGCAACCAAAGTGCAATCAGACTGCAATCAAACTGCCCCGT
TTCTTATAGCTTCCGAACCATCTGGTCTCGAGCACGCCCATTCATCACTC
ACTCTGCTTTTCATGTTTGATCTTTTACCGAGTCGACGTCGCTGCTCTCG
GGTGACTCGACCACTGCCAAAACCGCTT
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