mRNA_Ecto-sp13_S_contig1677.4845.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1677.4845.1
Unique NamemRNA_Ecto-sp13_S_contig1677.4845.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 1.080e-161
Identity = 223/250 (89.20%), Postives = 234/250 (93.60%), Query Frame = 1 
Query:  205 RITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQVYGCSWTREEY 954
            RITP+FPYNGGWAHPRLPSLH+G GLPPLGP+YLKKVFVWVPEY WD+IEYIPCPHC KRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLA MDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGF A SKSLA TY +RYFNQ+RSYVSLANR VS+ +GM+ P+ DLGMIPKFS IGDPSGF+SSPPSAHYLGDIWHK FYETPVVQ  GCSWTREEY
Sbjct:    2 RITPEFPYNGGWAHPRLPSLHRGAGLPPLGPFYLKKVFVWVPEYLWDEIEYIPCPHCNKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLATMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFAAASKSLANTYHARYFNQLRSYVSLANRCVSRHKGMW-PNVDLGMIPKFSSIGDPSGFHSSPPSAHYLGDIWHKGFYETPVVQADGCSWTREEY 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 380 bits (976), Expect = 1.070e-127
Identity = 176/265 (66.42%), Postives = 206/265 (77.74%), Query Frame = 1 
Query:  130 PQRVWIDEVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGM--YGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVV 918
            PQ   I E+K  +KA RKHENGKV RI+ +FPY  GWA P LPSL +  G+P + P+YLKKVFVWVPEY W++I+ IPCPHCG+R QPDGWNT+ RRVFLE DVCYLIGYRY CK CT+AN  +  ++RTT TF AWD  VLA+MDD+VSKEFPFVLT+KAAIS+S++DRLADDLLEG GF A SKSL   Y++ YF   RSYVSLANRRVSQ +G+   GP +D+G IPKF  + D  GFNS  PSAHYLGDIWHKWF E PV 
Sbjct:    4 PQNRSIYEIKGNIKASRKHENGKVKRIS-EFPYRDGWASPPLPSLQQSAGIPSVEPFYLKKVFVWVPEYIWNEIDCIPCPHCGERGQPDGWNTDARRVFLEQDVCYLIGYRYYCKRCTDANAMKNSEDRTTATFKAWDPDVLARMDDFVSKEFPFVLTRKAAISRSLIDRLADDLLEGKGFAATSKSLQNAYTATYFKLYRSYVSLANRRVSQLKGLGLLGPDADVGKIPKFEEMADALGFNSRHPSAHYLGDIWHKWFDEMPVT 267
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5K4D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D4_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 3.390e-116
Identity = 174/270 (64.44%), Postives = 212/270 (78.52%), Query Frame = 1 
Query:  124 VHPQRVWIDEVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDG--WNTEPRRVFLEDDVCYLIGYRYLCKGCTEANK-GRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQV 924
            V PQ  +I+++K+ ++ACRKHENG V R    FPYNGGWA+P LPSL+ G+G PPL P+YLKKV VWVPEY W+D+ +IPCPHCG RAQPDG  WNTEPRRVFLEDDVCY+IG+RY CK CT ANK  R EDERTTQTFNAWD  VLA+MDD+VS++FPFVLTKKAAI+++                 VSKSLA+ Y+SRYF+Q+RSYVSLA + +S+ RG+YG  S+   +PKF+  GDPSG+NSS PSAH+L DIW+KWFYETPVVQ+
Sbjct:  124 VPPQSAFIEQMKDNLRACRKHENGAVKRKGA-FPYNGGWANPPLPSLYTGLGAPPLEPFYLKKVLVWVPEYIWEDV-HIPCPHCGARAQPDGDGWNTEPRRVFLEDDVCYMIGFRYECKECTRANKEDRSEDERTTQTFNAWDPAVLARMDDFVSEQFPFVLTKKAAINRTN--------------HTVSKSLAQAYNSRYFSQMRSYVSLAKKGISKYRGLYGQQSNPD-VPKFAGTGDPSGYNSSSPSAHHLADIWNKWFYETPVVQL 376
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 4.430e-68
Identity = 108/276 (39.13%), Postives = 167/276 (60.51%), Query Frame = 1 
Query:  133 QRVWIDEVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQVYGCSWTREEY 954
            Q  + +EVK+K+     HE G V      FP++     P+  +      LP L  +Y K V VW+PE+ + +++ +PCP CG +  PDGWN + PRRVF+E DV Y++G+RY C  C E NKG+ E E+   +FNAW AG L ++ +Y+SKEFPF+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL + R +   G++   ++L  IP +F    D + +  + PS HYL D+W  +F + PV+++    WT EEY
Sbjct:   45 QERFFEEVKDKIDRSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLVSTRRTSS-GIFRS-ANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEMDSVDWTLEEY 315
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 3.760e-67
Identity = 108/276 (39.13%), Postives = 166/276 (60.14%), Query Frame = 1 
Query:  133 QRVWIDEVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQVYGCSWTREEY 954
            Q  + +EVK+K+     HE G V      FP++     P+  +      LP L  +Y K V VW+PE+ + +++ +PCP CG +  PDGWN + PRRVF++ DV Y++G+RY C  C E NKG+ E E+   +FNAWDAG L ++ +Y+SKEFPF+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL N R +   G++   ++L   P +F    D + +  + PS HYL D+   +F + PV++V    WT EEY
Sbjct:   45 QERFFEEVKDKIDQSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPQGPRRVFMDHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIFRS-ANLAKTPERFGSFDDSTKYGGAVPSEHYLRDVRRFYFSKLPVLEVDSVDWTLEEY 315
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5JE51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE51_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 5.020e-64
Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = 1 
Query:  319 VWVPEYFWDDIEYIPCPHCGKRAQPDGWNTEPRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQ-VRSYV 741
            +WVPEY WD+I+ +PCP CG+R QPDGWNT+ RRVFLE DVCY IGYRY CK CT+AN  +  ++RTT TFNAWD  VL +M+D+VSKEFPFVLT+K A S+S+VDRLADDLLEG GF   SKSL  +Y++ Y    VR+Y+
Sbjct:    1 MWVPEYMWDEIDCVPCPRCGERGQPDGWNTDARRVFLEQDVCYFIGYRYYCKRCTDANAMKNNEDRTTVTFNAWDPDVLGRMNDFVSKEFPFVLTRKGATSRSLVDRLADDLLEGKGFAVTSKSLLNSYTATYLKLIVRTYL 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5KNK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNK9_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.240e-61
Identity = 94/226 (41.59%), Postives = 146/226 (64.60%), Query Frame = 1 
Query:  253 LPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIP-KFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQV 924
            LP ++    LP L  +Y K V VW+PE+ + +++ +PCP CG +  PDGWN + PRRVF+E DV Y++G+RY C  C E N+G+ E E+   +FNAWDAG L ++ +Y+SKEF F+LTK++ I   +VDRLADDL+ G GF A +K++ + +++++      Y SL N R +   G++   ++L  IP +F    D + +  + PS HYL D+W  +F + PV++V
Sbjct:    8 LPHIYARPNLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNEGKQEAEKRKTSFNAWDAGCLRRLPEYMSKEFHFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIFRS-ANLAKIPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFSKLPVLEV 231
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5JQG2_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQG2_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 3.010e-57
Identity = 104/301 (34.55%), Postives = 162/301 (53.82%), Query Frame = 1 
Query:  133 QRVWIDEVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKT--------------------------YSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQVYGCSWTREEY 954
            Q  +  +VK K+     HE G V      FP++     P+  +     GLP +  +Y K V VW+PE+ + +++ +PCP CG +  PDGWN + PRRVF+E DV Y++G+RY C  C + N+G+ E E+   +FNAWDAG L ++ +Y+SKEFP +LTK++ I   +VDRLADDL+ G GF A +K++ +                            ++++      Y SL N R +   G++   +      +F    D + +  + PS HYL D+W  ++ + PV++V G  WT EEY
Sbjct:   45 QERFFQDVKVKIDQSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPGLPEVDWFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYIMGFRYKCAKCAKFNQGKEEAEKRKTSFNAWDAGCLQRLPEYISKEFPSLLTKRSGIEIRMVDRLADDLVHGKGFSAAAKNICQVNVHFLICSVLKITXXXXXXXXXXXXXXTTKFMVDQLKYTSLVNSRRTSS-GIFRSANHAKTPERFGSFDDSTKYGGAVPSEHYLRDVWWLYYSKLPVLEVDGVGWTLEEY 341
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.960e-50
Identity = 84/208 (40.38%), Postives = 129/208 (62.02%), Query Frame = 1 
Query:  133 QRVWIDEVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPYYLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYF-NQVRSYVSLA 750
            Q  + +EVK+K+     HE G V      FP++     P+  +      LP L  +Y K V VW+PE+ + +++ +PCP CG +  PDGWN + PRRVF+E DV Y++G+RY C  C E NKG+ E E+   +FNAWDAG L ++ +Y+SKEFPF+LTK++ I    VDRL D L+ G GF   +K + + +++++  +Q++  V+ A
Sbjct:  109 QERFFEEVKDKIDRSITHEGGGVKGR---FPFDNPLVRPKCATFQPSPDLPKLDRFYQKAVLVWIPEFLFPELQAVPCPGCGGKGAPDGWNPKGPRRVFMEHDVAYVMGFRYKCAKCAEFNKGKQEAEKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICKVDRLTDHLVHGKGFSGAAKDIRQAHTTKFMVDQLKDAVASA 313
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 7.520e-49
Identity = 82/201 (40.80%), Postives = 123/201 (61.19%), Query Frame = 1 
Query:  355 YIPCPHCGKRAQPDGWNTE-PRRVFLEDDVCYLIGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVLTKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLANRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLGDIWHKWFYETPVVQVYGCSWTREEY 954
            + P P CG +  PDGWN + PRRVF E DV Y++ +RY C  C E NKG+ E E+   +FNAWDAG L ++ +Y+SKEFPF+LTK++ I   +V+RLADDL+ G  F A +K++ + +++++      Y SL N R +   G++   +      +F    D + +  + PS HYL D+W  +F + PV++V    WT EEY
Sbjct:   82 FQPSPGCGGKGAPDGWNPKGPRRVFTEHDVAYVMEFRYKCAKCAEFNKGKQEAEKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLVNTRRTSS-GIFRSANLANTPERFGSFDDSTKYGGAVPSEHYLRDVWRLYFPKLPVLEVDSVDWTLEEY 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1677.4845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIV2_ECTSI1.080e-16189.203'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KSM2_9PHAE1.070e-12766.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4D4_9PHAE3.390e-11664.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE4.430e-6839.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7G9_9PHAE3.760e-6739.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE51_9PHAE5.020e-6464.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNK9_9PHAE3.240e-6141.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQG2_9PHAE3.010e-5734.553'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JXN0_9PHAE2.960e-5040.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX0_9PHAE7.520e-4940.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1677contigEcto-sp13_S_contig1677:9149..10692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score486.5
Seed ortholog evalue9.5e-135
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
Model size954
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons4
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
Cds size954
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.373515-CDS-Ecto-sp13_S_contig1677:9148..94251681462879.373515-CDS-Ecto-sp13_S_contig1677:9148..9425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1677 9149..9425 +
1681462879.3871148-CDS-Ecto-sp13_S_contig1677:9668..98521681462879.3871148-CDS-Ecto-sp13_S_contig1677:9668..9852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1677 9669..9852 +
1681462879.3967528-CDS-Ecto-sp13_S_contig1677:10012..104761681462879.3967528-CDS-Ecto-sp13_S_contig1677:10012..10476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1677 10013..10476 +
1681462879.406358-CDS-Ecto-sp13_S_contig1677:10663..106921681462879.406358-CDS-Ecto-sp13_S_contig1677:10663..10692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1677 10664..10692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1677.4845.1prot_Ecto-sp13_S_contig1677.4845.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1677 9149..10692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1677.4845.1

>prot_Ecto-sp13_S_contig1677.4845.1 ID=prot_Ecto-sp13_S_contig1677.4845.1|Name=mRNA_Ecto-sp13_S_contig1677.4845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
SSSGSGGGSAGPSSAPQQSSTSSGSNSSGGSGSGSGSSIPSVHPQRVWID
EVKNKVKACRKHENGKVTRITPDFPYNGGWAHPRLPSLHKGMGLPPLGPY
YLKKVFVWVPEYFWDDIEYIPCPHCGKRAQPDGWNTEPRRVFLEDDVCYL
IGYRYLCKGCTEANKGRPEDERTTQTFNAWDAGVLAKMDDYVSKEFPFVL
TKKAAISKSVVDRLADDLLEGTGFGAVSKSLAKTYSSRYFNQVRSYVSLA
NRRVSQCRGMYGPHSDLGMIPKFSRIGDPSGFNSSPPSAHYLGDIWHKWF
YETPVVQVYGCSWTREEY
back to top

mRNA from alignment at Ecto-sp13_S_contig1677:9149..10692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1677.4845.1 ID=mRNA_Ecto-sp13_S_contig1677.4845.1|Name=mRNA_Ecto-sp13_S_contig1677.4845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1677:9149..10692+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGCAGTGGAAGCGGTGGTGGTTCCGCGGGGCCCAGCAGCGCACCTCA
ACAAAGTTCAACTTCAAGCGGCAGCAACAGCAGTGGTGGTAGTGGTAGTG
GTAGTGGGAGCAGCATTCCGAGTGTGCACCCGCAGCGCGTGTGGATCGAC
GAGGTCAAGAACAAGGTTAAGGCATGTAGGAAACACGAGAACGGGAAGGT
AACGCGGATCACCCCTGACTTTCCCTACAATGGAGGATGGGCGCACCCTC
GTCTACCTTCGCTGCACAAAGGCATGGGTGAGTCGCTCTTTCGTGCGGAA
ATTTCAGATTTTAGCTTGGTCACAACAGTGCTACTGCTGCCTAGATGGCA
ACCTGACACGACGTGGGTGTTATTTTGTGTGGGGGTTATTTGGCTTGTTC
ACAGCAGTACTACTGCTGCGTAGATGGCAACCTGATACGACGTGGGTGTT
ATTTTGTGTCTCGCGCAATGCATAGATGATTTGAAGCTGCATCATCTTGC
TGTTGCGGAACCTTTTGCAGGTCTACCACCTCTCGGGCCTTATTATCTCA
AGAAGGTTTTCGTCTGGGTGCCTGAGTACTTTTGGGACGACATCGAGTAC
ATCCCCTGCCCGCATTGTGGTAAGCGTGCCCAGCCGGACGGGTGGAACAC
TGAGCCACGCCGAGTTTTTCTTGAGGACGATGTTTGCTACCTGATCGGAT
ACAGGTGCGCCAACGGTGAACTGTTGTAGTCTTGACATCTCTTGTAGATA
AAGATGTTTCTGTAACTCCCTGTTGCTTGTAAGCTTTTTCAGCGTGGTTG
TATTTTTTATAAATAAATTTGTGTACAAATTCCTAGCTGGCTTGTGTTGC
TGGCCTGTTCGCAGGTACCTCTGCAAGGGGTGCACTGAGGCTAACAAAGG
CAGGCCGGAAGATGAGCGCACAACTCAGACGTTCAACGCTTGGGATGCTG
GAGTTTTGGCCAAGATGGATGACTACGTGTCGAAAGAATTTCCTTTCGTT
TTGACCAAAAAAGCGGCGATCAGTAAGAGCGTCGTTGACCGCCTAGCAGA
TGACCTCCTTGAGGGTACAGGTTTTGGGGCGGTTTCAAAGTCGCTGGCGA
AGACGTATAGTTCGAGGTACTTCAATCAAGTCCGGTCGTACGTGTCGCTA
GCTAATCGCCGTGTTAGTCAGTGTAGGGGGATGTATGGGCCCCATTCTGA
CCTCGGTATGATCCCAAAGTTCTCCCGTATTGGAGATCCTTCGGGTTTCA
ACAGCAGCCCACCTTCGGCTCACTACCTGGGAGACATCTGGCACAAGTGG
TTCTACGAAACCCCAGTTGTACAGGTATGTACAAGCAGGATAGTCAAGAA
CAGTGCGGTTATTCTCTTGCATCACGACCTCTTTCTCTGGCTGCCTTAGA
GCATAGACAAAAACATGGGTACCGCAACCAACCGTAGTCGTTGCTATGTG
TAGCACGAGACCCTCACACGATGTCCTTGCCCGCTTTTCTGTTTTGTTTC
AAAATGACCAGGAAGATGGGTGCTCGTGGACGCGCGAAGAGTAT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1677:9149..10692+

>mRNA_Ecto-sp13_S_contig1677.4845.1 ID=mRNA_Ecto-sp13_S_contig1677.4845.1|Name=mRNA_Ecto-sp13_S_contig1677.4845.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1677:9149..10692+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAGCAGTGGAAGCGGTGGTGGTTCCGCGGGGCCCAGCAGCGCACCTCA
ACAAAGTTCAACTTCAAGCGGCAGCAACAGCAGTGGTGGTAGTGGTAGTG
GTAGTGGGAGCAGCATTCCGAGTGTGCACCCGCAGCGCGTGTGGATCGAC
GAGGTCAAGAACAAGGTTAAGGCATGTAGGAAACACGAGAACGGGAAGGT
AACGCGGATCACCCCTGACTTTCCCTACAATGGAGGATGGGCGCACCCTC
GTCTACCTTCGCTGCACAAAGGCATGGGTCTACCACCTCTCGGGCCTTAT
TATCTCAAGAAGGTTTTCGTCTGGGTGCCTGAGTACTTTTGGGACGACAT
CGAGTACATCCCCTGCCCGCATTGTGGTAAGCGTGCCCAGCCGGACGGGT
GGAACACTGAGCCACGCCGAGTTTTTCTTGAGGACGATGTTTGCTACCTG
ATCGGATACAGGTACCTCTGCAAGGGGTGCACTGAGGCTAACAAAGGCAG
GCCGGAAGATGAGCGCACAACTCAGACGTTCAACGCTTGGGATGCTGGAG
TTTTGGCCAAGATGGATGACTACGTGTCGAAAGAATTTCCTTTCGTTTTG
ACCAAAAAAGCGGCGATCAGTAAGAGCGTCGTTGACCGCCTAGCAGATGA
CCTCCTTGAGGGTACAGGTTTTGGGGCGGTTTCAAAGTCGCTGGCGAAGA
CGTATAGTTCGAGGTACTTCAATCAAGTCCGGTCGTACGTGTCGCTAGCT
AATCGCCGTGTTAGTCAGTGTAGGGGGATGTATGGGCCCCATTCTGACCT
CGGTATGATCCCAAAGTTCTCCCGTATTGGAGATCCTTCGGGTTTCAACA
GCAGCCCACCTTCGGCTCACTACCTGGGAGACATCTGGCACAAGTGGTTC
TACGAAACCCCAGTTGTACAGGTATATGGGTGCTCGTGGACGCGCGAAGA
GTAT
back to top