mRNA_Ecto-sp13_S_contig16766.4842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16766.4842.1
Unique NamemRNA_Ecto-sp13_S_contig16766.4842.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: D8LFK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK0_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 4.060e-79
Identity = 134/140 (95.71%), Postives = 138/140 (98.57%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
            +VYD+MTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQI+SGVSYEHAEGRLAALNLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQA ECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFG+KDA
Sbjct:  477 EVYDIMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIVSGVSYEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAGECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGEKDA 616          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 5.640e-79
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
            +VYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQI+SGVSYEHAEGRLAALNLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQA ECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFG+KDA
Sbjct: 2866 EVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIVSGVSYEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAGECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGEKDA 3005          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: D7G498_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G498_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.740e-51
Identity = 101/120 (84.17%), Postives = 104/120 (86.67%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVS 360
            +VYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHY  G     F   +    VS+EHAEGRLAALNLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLL RVS
Sbjct:  430 EVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYSRGRNGCSFASTR----VSHEHAEGRLAALNLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLGRVS 545          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A6H5JC18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC18_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.570e-44
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 1
Query:  145 QIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWF 405
            QIISGVSYEHAEGRLAA+NLCSQLLRRLPE NLDQLSSVFYLALVVRLVSDQAAECRAAASTA+RTLLDRVSPAVFQELLEFTGQWF
Sbjct:   30 QIISGVSYEHAEGRLAAINLCSQLLRRLPEPNLDQLSSVFYLALVVRLVSDQAAECRAAASTAIRTLLDRVSPAVFQELLEFTGQWF 116          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A835YZH5_9STRA (DRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH5_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.180e-32
Identity = 68/136 (50.00%), Postives = 92/136 (67.65%), Query Frame = 1
Query:    4 VYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGD 411
            VYD+M ++ +LAV S R +LRAT  Q FL FL+ YP+G KRL+ HL  ++ G  Y+H EGR+AAL++   L+RRLP   LD+ + +F+LAL VR V D A   RAAAS A+  LL RVS  V+ +L  +  +WFGD
Sbjct: 2826 VYDIMVEVGKLAVISPRASLRATCSQMFLDFLVTYPVGAKRLEQHLRAVLEGTGYQHEEGRVAALDMARHLIRRLPVPLLDEHAQLFFLALAVRAVGDDARAARAAASAALTQLLTRVSADVYAQLWGYAMRWFGD 2961          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A2P6TXU2_CHLSO (Small subunit processome component 20-like protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXU2_CHLSO)

HSP 1 Score: 116 bits (291), Expect = 1.530e-27
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
            +VYDLM ++ EL V S    +R+      L FLL YPLGEKRLQ HL  +++ +SYEH  GR AAL++   +L++ PE  + Q + + +L LV RLV+D +++CR      + TLL R  PA    L +F GQW G  DA
Sbjct: 2491 EVYDLMNRVQELMVQSQAAPVRSACSSALLQFLLDYPLGEKRLQEHLQFLLTNLSYEHESGREAALDMLGVVLQKFPEQLVGQWAEMVFLPLVARLVNDPSSKCRQMVGACLSTLLRRAPPARRDRLAQFCGQWLGGSDA 2630          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: W1NVA9_AMBTC (DRIM domain-containing protein n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NVA9_AMBTC)

HSP 1 Score: 110 bits (276), Expect = 1.600e-25
Identity = 56/141 (39.72%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWF-GDKDA 420
            +VYDLM +++EL VTS  P ++    Q  L F + YP+G KRLQ HL+ ++S +SYEHA GR A L +   ++ + P+  +D+ S +F+  LV+RLV+D   + R    T ++ L+ R S  V Q +L+ T  WF G+K++
Sbjct: 2244 EVYDLMIRVSELMVTSQVPEIQQKCSQVMLQFFMDYPIGSKRLQQHLDFLVSNLSYEHASGREAVLEMLHTIIMKFPQDIVDKQSEMFFFHLVLRLVNDSDKQIRTMVGTVIKVLIGRTSQRVLQHILKSTLSWFMGEKES 2384          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A2P6VR64_9CHLO (Small subunit processome component 20-like protein n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VR64_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 2.980e-25
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA 420
            +VYDLM ++ EL V S    +RA      L FLL YPLGEKRLQ HL  +++   YEH  GR AAL++ + +L + PEA + Q + + +L LV RLV+D +++CRA    A+  LL R S      L+++  QW    DA
Sbjct: 2453 EVYDLMNRVQELMVRSQAAPVRAACSSALLQFLLDYPLGEKRLQEHLQFLLTNAGYEHESGREAALDMLTVVLTKFPEALVSQWAEMIFLPLVARLVNDPSSKCRAMVGAALAVLLRRASAPRRDRLVQYCQQWLAGGDA 2592          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A485KCI0_9STRA (Aste57867_4062 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KCI0_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.030e-24
Identity = 55/139 (39.57%), Postives = 83/139 (59.71%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKD 417
            +VYDLM ++ E+ V S    +RA     +L FLL YPLG+KRL FH+  +++ +++ +  GRL+ALN    L+++LP   LD  +  F L LV++LV+D+AA CR  A+T +  L  R+S   F E L     W+   D
Sbjct: 2214 EVYDLMIRIGEMMVQSQVANVRANCASMYLLFLLDYPLGDKRLNFHVRFVVNNLTFVYESGRLSALNCLHALVKKLPSDLLDVRAQFFLLPLVLQLVNDEAAPCRQLAATVISDLFRRISAKTFTESLALVAPWWSSPD 2352          
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Match: A0A1Y1HR11_KLENI (Down-regulated in metastasis family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HR11_KLENI)

HSP 1 Score: 106 bits (264), Expect = 6.630e-24
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 QVYDLMTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVSYEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECRAAASTAVRTLLDRVSPAVFQELLEFTGQWFG 408
            ++YDLM ++ +L V S   T+R    QT L FLL +PLG++RLQ HL  + + ++YEH  GR AAL +   +L + P   +D+    F+L LV RLV+D   +CRA     ++ L+ RV  A  Q +++F   W+G
Sbjct: 2600 EMYDLMIRVGQLMVRSQDTTVRTLCSQTLLQFLLDFPLGQRRLQQHLEFLAANLAYEHPSGREAALEMIHAVLVKFPPEIVDENGDFFFLPLVTRLVNDDKQQCRAMVGAVLKVLMGRVGSAARQRMIDFAMAWYG 2735          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16766.4842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFK0_ECTSI4.060e-7995.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LFJ6_ECTSI5.640e-7996.43DRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G498_ECTSI1.740e-5184.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC18_9PHAE3.570e-4496.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZH5_9STRA2.180e-3250.00DRIM domain-containing protein n=1 Tax=Tribonema m... [more]
A0A2P6TXU2_CHLSO1.530e-2743.57Small subunit processome component 20-like protein... [more]
W1NVA9_AMBTC1.600e-2539.72DRIM domain-containing protein n=1 Tax=Amborella t... [more]
A0A2P6VR64_9CHLO2.980e-2542.14Small subunit processome component 20-like protein... [more]
A0A485KCI0_9STRA1.030e-2439.57Aste57867_4062 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1Y1HR11_KLENI6.630e-2438.97Down-regulated in metastasis family protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16766contigEcto-sp13_S_contig16766:2411..3504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score254.6
Seed ortholog evalue2.6e-65
Seed eggNOG ortholog2880.D8LFJ6
Model size420
KEGG koko:K14772,ko:K16569
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Exons2
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1823@1,KOG1823@2759
Cds size405
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.1864223-CDS-Ecto-sp13_S_contig16766:2410..26831681462879.1864223-CDS-Ecto-sp13_S_contig16766:2410..2683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16766 2411..2683 -
1681462879.19692-CDS-Ecto-sp13_S_contig16766:3357..34891681462879.19692-CDS-Ecto-sp13_S_contig16766:3357..3489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16766 3358..3489 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462879.2062004-UTR-Ecto-sp13_S_contig16766:3489..35041681462879.2062004-UTR-Ecto-sp13_S_contig16766:3489..3504Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16766 3490..3504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16766.4842.1prot_Ecto-sp13_S_contig16766.4842.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16766 2411..3489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16766.4842.1

>prot_Ecto-sp13_S_contig16766.4842.1 ID=prot_Ecto-sp13_S_contig16766.4842.1|Name=mRNA_Ecto-sp13_S_contig16766.4842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MTKLAELAVTSHRPTLRATSGQTFLTFLLHYPLGEKRLQFHLNQIISGVS
YEHAEGRLAALNLCSQLLRRLPEANLDQLSSVFYLALVVRLVSDQAAECR
AAASTAVRTLLDRVSPAVFQELLEFTGQWFGDKDA
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mRNA from alignment at Ecto-sp13_S_contig16766:2411..3504-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16766.4842.1 ID=mRNA_Ecto-sp13_S_contig16766.4842.1|Name=mRNA_Ecto-sp13_S_contig16766.4842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16766:2411..3504- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCTACGACCTCATGACCAAGCTCGCCGAGCTAGCGGTCACGAGCCA CCGACCGACGCTGCGCGCCACCTCCGGCCAGACCTTCCTGACCTTCCTCC TGCACTACCCCCTGGGGGAGAAACGGCTGCAATTTCACCTCAACCAGGTC CGTCGATGATTGGTTGACTTTGCGTGTGTGTGTGTGGGGGGGGGGGGCTG GAGGAGCCACGGGTGCTGTTTGCCGTGCCTCTACTGCTGTCTTATGAAAA TGTTGAGAATTTTTGTGAGAGGGTGCTAGAACGGAGCGATCAGGTCGAGA GACAAAAAACGTGTAGATGTTTGAGTATTCCGTTTCGAGGAAGATGTGTC GGTATGTAGCGCACGCGGTGGTGGCTTACTGTTTGGCGCCGAGGGTGAAG CTGCTACGGCTGTTTGAGTGACGTATCTTCTTCGAGCTGTTTTGTATACC TTGTTCTGAAGTGCTTGCTCACCTTGTGAGAGCTTTTGACATACCCCAGG AAGACGACGGTCATGGCCTTGTTGTCGCCCCTTTTCCTTCCCAGTTGCTT GCACAACTTTCTCTCCCTCTTTTTGCCCCCTCAACCTCCCCGCCCGCATG CTCAAGAGTAATGTTCCTACTAGATATGATAGAGACAACACATTTTTTTT AGCCTCCTTTGGCAAAGTAGCAAGGAACGATTGGCCATCGGTGACGGGTC CTGCAGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGCCAATGGTCTAA CTGCTACGGCAAGGCATCCAAAACATGAGTACCCCACCCTCCCCCTTGTC CAAATTGTCCCGACCAATCAGATCATCAGCGGGGTCTCCTACGAGCACGC CGAGGGGCGCCTCGCGGCCCTCAACCTATGCTCCCAGCTCCTCCGACGGC TCCCGGAGGCCAACCTCGACCAGCTCTCCAGCGTCTTCTACCTCGCCCTG GTGGTTCGCCTGGTCAGCGACCAAGCGGCGGAGTGCCGCGCCGCCGCTTC CACCGCCGTCCGGACCCTTCTTGACCGCGTTTCCCCCGCTGTGTTCCAGG AGCTCTTGGAGTTCACGGGGCAGTGGTTCGGAGATAAGGATGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16766:2411..3504-

>mRNA_Ecto-sp13_S_contig16766.4842.1 ID=mRNA_Ecto-sp13_S_contig16766.4842.1|Name=mRNA_Ecto-sp13_S_contig16766.4842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16766:2411..3504- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCAAGCTCGCCGAGCTAGCGGTCACGAGCCACCGACCGACGCTGCG
CGCCACCTCCGGCCAGACCTTCCTGACCTTCCTCCTGCACTACCCCCTGG
GGGAGAAACGGCTGCAATTTCACCTCAACCAGATCATCAGCGGGGTCTCC
TACGAGCACGCCGAGGGGCGCCTCGCGGCCCTCAACCTATGCTCCCAGCT
CCTCCGACGGCTCCCGGAGGCCAACCTCGACCAGCTCTCCAGCGTCTTCT
ACCTCGCCCTGGTGGTTCGCCTGGTCAGCGACCAAGCGGCGGAGTGCCGC
GCCGCCGCTTCCACCGCCGTCCGGACCCTTCTTGACCGCGTTTCCCCCGC
TGTGTTCCAGGAGCTCTTGGAGTTCACGGGGCAGTGGTTCGGAGATAAGG
ATGCG
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