mRNA_Ecto-sp13_S_contig16739.4826.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16739.4826.1
Unique NamemRNA_Ecto-sp13_S_contig16739.4826.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: D8LGW4_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW4_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 3.620e-25
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:  163 RGRLSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            +GR  R QGLAPVFVDPKTGLFGESGG VGTNRGLVTLGARGDSYYEYLLKQWLFSGKK
Sbjct:  541 KGRGER-QGLAPVFVDPKTGLFGESGGAVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 598
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A6H5JF31_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF31_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.620e-25
Identity = 54/59 (91.53%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:  163 RGRLSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            +GR  R QGLAPVFVDPKTGLFGESGG VGTNRGLVTLGARGDSYYEYLLKQWLFSGKK
Sbjct:  546 KGRGER-QGLAPVFVDPKTGLFGESGGAVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 603
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A7S3Y3I5_HETAK (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3I5_HETAK)

HSP 1 Score: 66.2 bits (160), Expect = 1.250e-10
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:  127 GYFLDALPRSARRGRLSREQGL---APVFVDPKTGLFGES-GGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGK 336
            G   DA   +  R R   E+G+    P+++DPK+G F  + GG  G   G++TLGAR DSYYEYLLKQWL SG+
Sbjct:  151 GAAADAAMGALERARSKLEEGIDAIPPMYLDPKSGEFPAAHGGGGGNGHGVLTLGARADSYYEYLLKQWLASGR 224
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A8J9S032_9CHLO (Probable endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S032_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 1.670e-9
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:  178 REQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            R  GLAP +VDP  G+          + G++TLGARGDSYYEY+LKQWL SGKK
Sbjct:  743 RVHGLAPFYVDPANGVL---------SGGVLTLGARGDSYYEYMLKQWLISGKK 787
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: UPI001F045320 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F045320)

HSP 1 Score: 63.5 bits (153), Expect = 2.200e-9
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  172 LSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            L +  GL P++++P  G+F +SG T       +TLGARGDSYYEYLLKQWL  GKK
Sbjct:  404 LDKPGGLVPIYINPSNGMF-QSGAT-------ITLGARGDSYYEYLLKQWLQGGKK 451
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A820HAL9_9BILA (alpha-1,2-Mannosidase n=4 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820HAL9_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 3.140e-9
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  175 SREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            S++ GL P+F++P TG F         + G+++ GARGDSYYEYLLKQWL +G+K
Sbjct:  179 SKKDGLVPIFINPLTGRF---------SSGVISFGARGDSYYEYLLKQWLQTGQK 224
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A813NTB7_9BILA (alpha-1,2-Mannosidase n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A813NTB7_9BILA)

HSP 1 Score: 62.8 bits (151), Expect = 3.950e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:  130 YFLDALPRSARRGRLSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGK 336
            Y + A   S+   R S+  GL P+F++P +GLF         + G+++ GARGDSYYEYLLKQWL +G+
Sbjct:  213 YEIAADKSSSVLHRASKTDGLVPIFINPTSGLF---------SGGVISFGARGDSYYEYLLKQWLQTGR 272
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: UPI00200C53B8 (endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase isoform X1 n=2 Tax=Leguminivora glycinivorella TaxID=1035111 RepID=UPI00200C53B8)

HSP 1 Score: 62.8 bits (151), Expect = 4.030e-9
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  169 RLSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGK 336
            +L ++ GL P+F++P TG F             VTLGARGDSYYEYLLKQWL +GK
Sbjct:  317 QLPKKHGLVPIFINPNTGQF--------LPHATVTLGARGDSYYEYLLKQWLHTGK 364
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A2T7NLQ3_POMCA (alpha-1,2-Mannosidase n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NLQ3_POMCA)

HSP 1 Score: 62.8 bits (151), Expect = 4.080e-9
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  172 LSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            L +EQGL P+F++   G F +S          +T+GARGDSYYEYLLKQW+ SGKK
Sbjct:  388 LPKEQGLVPIFINANDGKFRQS---------TITVGARGDSYYEYLLKQWIQSGKK 434
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BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Match: A0A0D2VTF4_CAPO3 (alpha-1,2-Mannosidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VTF4_CAPO3)

HSP 1 Score: 62.8 bits (151), Expect = 4.160e-9
Identity = 32/57 (56.14%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  169 RLSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYYEYLLKQWLFSGKK 339
            R  RE GL P+++ P +G F        TN   +TLGARGDSYYEYLLKQWL  GKK
Sbjct:  548 RNMREDGLVPIYISPTSGTFS-------TNH--ITLGARGDSYYEYLLKQWLQGGKK 595
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16739.4826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGW4_ECTSI3.620e-2591.53alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JF31_9PHAE3.620e-2591.53alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A7S3Y3I5_HETAK1.250e-1048.65alpha-1,2-Mannosidase (Fragment) n=1 Tax=Heterosig... [more]
A0A8J9S032_9CHLO1.670e-957.41Probable endoplasmic reticulum mannosyl-oligosacch... [more]
UPI001F0453202.200e-955.36endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
A0A820HAL9_9BILA3.140e-950.91alpha-1,2-Mannosidase n=4 Tax=Rotaria sp. Silwood2... [more]
A0A813NTB7_9BILA3.950e-944.93alpha-1,2-Mannosidase n=1 Tax=Didymodactylos carno... [more]
UPI00200C53B84.030e-953.57endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
A0A2T7NLQ3_POMCA4.080e-953.57alpha-1,2-Mannosidase n=1 Tax=Pomacea canaliculata... [more]
A0A0D2VTF4_CAPO34.160e-956.14alpha-1,2-Mannosidase n=1 Tax=Capsaspora owczarzak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16739contigEcto-sp13_S_contig16739:497..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score109.0
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D8LGW4
Preferred nameMAN1B1
Model size342
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009311,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0033554,GO:0034976,GO:0035010,GO:0035977,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036509,GO:0036510,GO:0036511,GO:0036512,GO:0042175,GO:0042221,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:0097466,GO:0097708,GO:0098588,GO:0098791,GO:0098827,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904380,GO:1904382,GO:1904587
Exons1
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2431@1,KOG2431@2759
EC3.2.1.113
Cds size342
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462878.011062-CDS-Ecto-sp13_S_contig16739:496..8381681462878.011062-CDS-Ecto-sp13_S_contig16739:496..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16739 497..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16739.4826.1prot_Ecto-sp13_S_contig16739.4826.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16739 497..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16739.4826.1

>prot_Ecto-sp13_S_contig16739.4826.1 ID=prot_Ecto-sp13_S_contig16739.4826.1|Name=mRNA_Ecto-sp13_S_contig16739.4826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
RSRSWLAHEFVSTARKQPFVIPTRLGGGCHPCRRVYCRGCYRGYFLDALP
RSARRGRLSREQGLAPVFVDPKTGLFGESGGTVGTNRGLVTLGARGDSYY
EYLLKQWLFSGKK*
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mRNA from alignment at Ecto-sp13_S_contig16739:497..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16739.4826.1 ID=mRNA_Ecto-sp13_S_contig16739.4826.1|Name=mRNA_Ecto-sp13_S_contig16739.4826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16739:497..838+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGCCGCTCTTGGTTGGCCCATGAATTCGTGTCGACCGCACGCAAGCA
GCCTTTCGTCATCCCTACACGCTTGGGGGGTGGGTGTCACCCTTGTCGCC
GGGTTTATTGCCGTGGGTGTTACCGTGGGTATTTCCTTGACGCTCTTCCA
CGATCTGCTCGACGGGGTCGTCTTTCTCGCGAGCAGGGGTTGGCTCCTGT
CTTCGTCGATCCCAAGACAGGGCTCTTCGGGGAGTCTGGCGGGACGGTCG
GGACGAATCGCGGGTTGGTCACTCTCGGCGCGAGGGGGGACTCGTACTAC
GAGTACCTGCTGAAGCAGTGGCTGTTTTCCGGCAAGAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16739:497..838+

>mRNA_Ecto-sp13_S_contig16739.4826.1 ID=mRNA_Ecto-sp13_S_contig16739.4826.1|Name=mRNA_Ecto-sp13_S_contig16739.4826.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16739:497..838+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAGCCGCTCTTGGTTGGCCCATGAATTCGTGTCGACCGCACGCAAGCA
GCCTTTCGTCATCCCTACACGCTTGGGGGGTGGGTGTCACCCTTGTCGCC
GGGTTTATTGCCGTGGGTGTTACCGTGGGTATTTCCTTGACGCTCTTCCA
CGATCTGCTCGACGGGGTCGTCTTTCTCGCGAGCAGGGGTTGGCTCCTGT
CTTCGTCGATCCCAAGACAGGGCTCTTCGGGGAGTCTGGCGGGACGGTCG
GGACGAATCGCGGGTTGGTCACTCTCGGCGCGAGGGGGGACTCGTACTAC
GAGTACCTGCTGAAGCAGTGGCTGTTTTCCGGCAAGAAGTGA
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