mRNA_Ecto-sp13_S_contig16708.4807.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16708.4807.1
Unique NamemRNA_Ecto-sp13_S_contig16708.4807.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16708.4807.1 vs. uniprot
Match: A0A6H5KPE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPE9_9PHAE)

HSP 1 Score: 689 bits (1778), Expect = 2.520e-240
Identity = 488/559 (87.30%), Postives = 499/559 (89.27%), Query Frame = 1 
Query:    4 YRLVVWGQVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISGNAAALNARLSTTTEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLIIDGLRSLVDALDQDGDEEEGQAGRGLGSDNRREGFPSPASRTHGTPRRPGSCEGGGGCGEVGDTAGNFHYHQHHDKRQQRRPLVSLRATCIAAVAVQRLVRLAACRASRRGAXXXXXXXXXXXXXXXXXXXXXXXGGRPGLSRQGDVGIGEDIISLGPRGSGG-SSGGGVPMLLDTQVVSPGSMSLALTSLLADHSKDGTGDPSQAGGLACRSDCGGXXXXXXSDGERCMGLLGALVVVDAGDVSSAA----------TGEWLGRG--GTAVVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAGRGGGSGSDPRLLGGASRVVASRCARHHGPEIWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEV 1635
            +RLVVWGQVEAQRRAKKAAQTAADCALRDLSTARRLISGFE+EKSRISGNAAALNARLST TEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGS+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VL+IDGLRSLVDAL QDGDEEEGQAG GLGS+N R G P+PASRTHGTPRRPGSCEGGGGCGEVGD AGN HYHQ+HDKRQQRRPLVSLRATCIAAVAVQRLV            XXXXXXXXXXXXXXXXXXXX   GGRP  S  GD GI EDII LGPRGSGG SSGGGVPMLLDTQVVSP SMSLAL SLLAD SKDGTGDPSQAG +ACRSD G XXXXXX DGERCMGLLGALVVVDAG+VSS             GEW  RG  GTAVVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAG GGGSGSDPRLLGGASRVVASRCARHHGPE+WKA QERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAE+
Sbjct:   13 HRLVVWGQVEAQRRAKKAAQTAADCALRDLSTARRLISGFEEEKSRISGNAAALNARLSTITEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLMIDGLRSLVDALRQDGDEEEGQAGGGLGSNNGRGGSPAPASRTHGTPRRPGSCEGGGGCGEVGDMAGNVHYHQNHDKRQQRRPLVSLRATCIAAVAVQRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGRPSPSPHGDAGIREDIIPLGPRGSGGGSSGGGVPMLLDTQVVSPASMSLALMSLLADLSKDGTGDPSQAGCVACRSDGGXXXXXXXXDGERCMGLLGALVVVDAGNVSSXXXXXXXXXXXXAGEWFTRGDKGTAVVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGPEVWKARQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEI 571
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BLAST of mRNA_Ecto-sp13_S_contig16708.4807.1 vs. uniprot
Match: D8LN18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN18_ECTSI)

HSP 1 Score: 685 bits (1768), Expect = 9.510e-234
Identity = 480/547 (87.75%), Postives = 492/547 (89.95%), Query Frame = 1 
Query:   25 QVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISGNAAALNARLSTTTEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKWHGSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VLIIDGLRSLVDALDQDGDEEEGQAGRGLGSDNRREGFPSPASRTHGTPRRPGSCEGGGGCGEVGDTAGNFHYHQHHDKRQQRRPLVSLRATCIAAVAVQRLVRLAACRASRRGAXXXXXXXXXXXXXXXXXXXXXXX-GGRPGLSRQGDVGIGEDIISLGPRGSGGSSGGG-VPMLLDTQVVSPGSMSLALTSLLADHSKDGTGDPSQAGGLACRSDCGGXXXXXXSD---GERCMGLLGALVVVDAGDVSSAA-TGEWLGRG--GTAVVTGAARDAAGRTSLLQVLAGGQVGHWRRVEKRGLVPWAGRGGGSGSDPRLLGGASRVVASRCARHHGPEIWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEV 1635
            +VEAQRRAK+AAQTAADCALRDLSTARRLIS FEKEK+RISGNA ALNARLST TEEASAAK GLRLL RAC PLLERCRLLAEHKRLLAKWH S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        VLIIDGLRSLVDAL QDGDEEEGQAGRGLGS+N     P+PASR HGTPRRPGS EGGGGCGEVGDTAGN H HQHHDKRQQRRPLVSLRATCIAAVAVQRLVRLAACRASRR AXXXXXXXXXXXXXXXXXXXXX   GGRP  SR GD GIGE II LGPRGSGG SGGG VPMLLDTQVVSPGSMSLAL SLL DHSKDGTGDPSQAGG+ACR D G XXXXXX     GERCMGLLGALVVVDAG++SSAA TGEW GRG  GTAV TGAARDAAGRTSLL+VLAGGQVGHWRRVEKRGLVPWAG GGGSGSDPRLLGGASRVVASRCARHHG ++WKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEV
Sbjct:  498 EVEAQRRAKRAAQTAADCALRDLSTARRLISDFEKEKARISGNAVALNARLSTVTEEASAAKNGLRLLARACWPLLERCRLLAEHKRLLAKWHDSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSQQPTMVLIIDGLRSLVDALSQDGDEEEGQAGRGLGSENGGGDPPAPASRAHGTPRRPGSSEGGGGCGEVGDTAGNVHNHQHHDKRQQRRPLVSLRATCIAAVAVQRLVRLAACRASRREAXXXXXXXXXXXXXXXXXXXXXTAAGGRPSPSRHGDAGIGEAIIPLGPRGSGGGSGGGGVPMLLDTQVVSPGSMSLALMSLLGDHSKDGTGDPSQAGGVACRGDGGXXXXXXXXXXXXGERCMGLLGALVVVDAGNISSAAATGEWFGRGFEGTAVETGAARDAAGRTSLLEVLAGGQVGHWRRVEKRGLVPWAGSGGGSGSDPRLLGGASRVVASRCARHHGQDVWKAWQERAAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEV 1044
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16708.4807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPE9_9PHAE2.520e-24087.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN18_ECTSI9.510e-23487.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16708contigEcto-sp13_S_contig16708:816..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1653
Hectar predicted targeting categoryother localisation
Exons3
Cds size1653
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462876.4833546-CDS-Ecto-sp13_S_contig16708:815..10081681462876.4833546-CDS-Ecto-sp13_S_contig16708:815..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16708 816..1008 -
1681462876.4957876-CDS-Ecto-sp13_S_contig16708:1351..26711681462876.4957876-CDS-Ecto-sp13_S_contig16708:1351..2671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16708 1352..2671 -
1681462876.5066972-CDS-Ecto-sp13_S_contig16708:3175..33151681462876.5066972-CDS-Ecto-sp13_S_contig16708:3175..3315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16708 3176..3315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16708.4807.1prot_Ecto-sp13_S_contig16708.4807.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16708 816..3315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16708.4807.1

>prot_Ecto-sp13_S_contig16708.4807.1 ID=prot_Ecto-sp13_S_contig16708.4807.1|Name=mRNA_Ecto-sp13_S_contig16708.4807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=551bp
MYRLVVWGQVEAQRRAKKAAQTAADCALRDLSTARRLISGFEKEKSRISG
NAAALNARLSTTTEEASAAKAGLRLLVRACLPLLERCRLLAEHKRLLAKW
HGSAAAADAAAAARRGGGAVIGAAARRSGARGRGSGVGGDAASAEAAAAA
AAAAGSQQPTTVLIIDGLRSLVDALDQDGDEEEGQAGRGLGSDNRREGFP
SPASRTHGTPRRPGSCEGGGGCGEVGDTAGNFHYHQHHDKRQQRRPLVSL
RATCIAAVAVQRLVRLAACRASRRGAARAAAAATTDSHTDLPPPPPPPPG
GRPGLSRQGDVGIGEDIISLGPRGSGGSSGGGVPMLLDTQVVSPGSMSLA
LTSLLADHSKDGTGDPSQAGGLACRSDCGGGGGGGSSDGERCMGLLGALV
VVDAGDVSSAATGEWLGRGGTAVVTGAARDAAGRTSLLQVLAGGQVGHWR
RVEKRGLVPWAGRGGGSGSDPRLLGGASRVVASRCARHHGPEIWKAWQER
AAAEEACSLLGATRRGTAALARLAGEAERRLLESEAGRLQAKAEVSLFHR
*
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mRNA from alignment at Ecto-sp13_S_contig16708:816..3315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16708.4807.1 ID=mRNA_Ecto-sp13_S_contig16708.4807.1|Name=mRNA_Ecto-sp13_S_contig16708.4807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2500bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16708:816..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCGTTTGGTCGTTTGGGGCCAGGTGGAGGCGCAAAGGCGGGCGAA
GAAAGCGGCCCAGACTGCAGCGGACTGCGCCCTCCGCGACCTGTCGACCG
CAAGGAGGCTGATATCGGGCTTCGAGAAGGAGAAGTCGAGGTAGGTAAAA
CATCATCACGCTGAACTTTTTTTTTGTGTGTCGCTCGAAGAACGGGTGTT
GTGTTTTCTACACATCCGAGTTCTACCGTTGGGACGTACTGTATCGGCGC
CTCAAAAGGCTGGGCGGCAAGAAGCCATTTGTTCTCTGACACAGCCGCCT
GTCTGTGTGTGTTCTCGGCAGGCAGAGGGTGCGCTCGACTGATTCCTTTT
TTTCTTCCTGGGCGATCGCAGCACGTGGTTGAACTGTTGCCTGTTTCCTT
TCGTCAACCCACCTGGACACCTAATGGCAAGGGAGGTTTGCTCATGGGAG
GAGGGGACCCCCCCCCCAACCCCACTCCCCGTCCCCTAGTCTGTAGAAGA
GCCTCTGCGGCAACGTTTTCTCTGATCTCTTGGGCCTCGTTTTGTTTTGA
ACTCCACATCATCTTCTTGTCTGTGTCTCCTTCCCGCACAACCGCGTACC
CTCGCCGCTACTTACTGCCGCCACCGCCGCCGCCAACCTTTCAGAATCTC
GGGCAACGCGGCCGCCCTGAACGCCCGCCTGTCGACGACTACTGAGGAGG
CGTCTGCGGCGAAGGCCGGCCTGCGGCTTCTCGTGAGGGCCTGCTTGCCG
CTGCTAGAGCGCTGCCGCCTGCTGGCGGAGCACAAAAGGCTGCTGGCGAA
GTGGCACGGCTCTGCGGCGGCGGCAGATGCGGCGGCGGCGGCGAGAAGAG
GAGGCGGCGCCGTGATAGGCGCGGCGGCACGACGATCAGGAGCGCGAGGT
CGGGGGAGTGGGGTGGGGGGCGACGCAGCATCGGCGGAAGCGGCAGCAGC
AGCAGCAGCAGCAGCTGGTTCCCAGCAGCCGACCACGGTGCTGATTATCG
ACGGACTGAGGTCTTTAGTCGACGCGCTCGACCAGGACGGCGACGAAGAG
GAAGGTCAGGCCGGGAGAGGACTCGGGTCCGATAACAGGCGAGAGGGCTT
CCCCTCGCCGGCTTCGCGTACGCACGGCACTCCGCGGAGACCGGGGTCAT
GCGAAGGCGGCGGCGGTTGCGGTGAGGTCGGAGACACGGCAGGGAACTTT
CATTACCACCAGCACCACGACAAGCGGCAGCAGCGGCGGCCTCTTGTGTC
CCTTCGCGCGACCTGCATCGCCGCCGTGGCCGTTCAGCGGCTGGTGCGGC
TGGCCGCGTGCCGAGCGTCGCGGAGAGGGGCTGCGAGGGCGGCAGCGGCA
GCAACCACCGATAGTCATACCGACCTGCCACCACCACCACCACCACCACC
AGGCGGTCGCCCGGGTCTATCGCGACAAGGGGACGTCGGCATCGGTGAGG
ACATTATCTCGCTGGGACCGCGGGGGTCGGGCGGCAGTTCCGGCGGCGGC
GTGCCCATGCTCCTCGATACCCAGGTCGTCTCGCCCGGCTCGATGTCGCT
CGCGTTGACGTCCCTCCTCGCTGACCACAGCAAGGACGGCACCGGTGACC
CGAGTCAGGCAGGTGGCTTGGCATGCCGAAGCGACTGCGGTGGTGGTGGT
GGTGGTGGCAGCAGCGATGGAGAGCGGTGTATGGGGCTCCTGGGCGCGCT
GGTCGTCGTCGACGCCGGAGACGTCTCCTCCGCCGCAACAGGAGAATGGT
TGGGTAGAGGAGGGACGGCGGTGGTGACGGGTGCGGCGAGAGACGCCGCT
GGCCGGACGTCGTTACTGCAGGTGCTTGCGGGAGGGCAGGTCGGCCACTG
GCGGCGAGTTGAGAAGCGAGGCTTGGTGCCCTGGGCTGGTAGAGGCGGTG
GTAGCGGAAGCGATCCCCGCCTGCTGGGTGGTGCGTCTCGAGTGGTGGCT
AGCCGATGCGCGAGGTACGCTTGTTGTTGTTTCGTTCTGAAAAGAGCATG
AGATTTATCTACATTCTCCCTTGAGGCGGGAATAGGTATTGTGGCCTGTA
TGGCACGGTCATCGTTGCTTCGTGTCGCAGATGTGAAGATGGGATGGAAA
GACCCGCCCCGCCCCCCGGCCTATAGGGAAACATTTTTGAGCCACCTTTG
GCGAAGTGGGAAGGAACGATTGGCCACATCGGTGAAGTCATCGGTCCTTT
GGGAACAACGCTCCGTCCTCTCGAGGATGCGCGTGCGATCAATCGTCTGA
TAACTTAATATCAGGGATGCAAAACATGAGTACGCCCCCCGCCCGAACGA
CACGCAGGCATCACGGACCAGAGATTTGGAAGGCCTGGCAGGAGCGCGCC
GCGGCCGAAGAGGCGTGTTCGCTCTTGGGGGCCACGCGGAGGGGAACGGC
CGCGCTCGCGCGACTGGCCGGGGAGGCCGAGCGCCGGTTGCTGGAGAGCG
AGGCTGGCAGGCTGCAGGCGAAGGCAGAGGTGAGTCTATTTCATAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16708:816..3315-

>mRNA_Ecto-sp13_S_contig16708.4807.1 ID=mRNA_Ecto-sp13_S_contig16708.4807.1|Name=mRNA_Ecto-sp13_S_contig16708.4807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1653bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16708:816..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATCGTTTGGTCGTTTGGGGCCAGGTGGAGGCGCAAAGGCGGGCGAA
GAAAGCGGCCCAGACTGCAGCGGACTGCGCCCTCCGCGACCTGTCGACCG
CAAGGAGGCTGATATCGGGCTTCGAGAAGGAGAAGTCGAGAATCTCGGGC
AACGCGGCCGCCCTGAACGCCCGCCTGTCGACGACTACTGAGGAGGCGTC
TGCGGCGAAGGCCGGCCTGCGGCTTCTCGTGAGGGCCTGCTTGCCGCTGC
TAGAGCGCTGCCGCCTGCTGGCGGAGCACAAAAGGCTGCTGGCGAAGTGG
CACGGCTCTGCGGCGGCGGCAGATGCGGCGGCGGCGGCGAGAAGAGGAGG
CGGCGCCGTGATAGGCGCGGCGGCACGACGATCAGGAGCGCGAGGTCGGG
GGAGTGGGGTGGGGGGCGACGCAGCATCGGCGGAAGCGGCAGCAGCAGCA
GCAGCAGCAGCTGGTTCCCAGCAGCCGACCACGGTGCTGATTATCGACGG
ACTGAGGTCTTTAGTCGACGCGCTCGACCAGGACGGCGACGAAGAGGAAG
GTCAGGCCGGGAGAGGACTCGGGTCCGATAACAGGCGAGAGGGCTTCCCC
TCGCCGGCTTCGCGTACGCACGGCACTCCGCGGAGACCGGGGTCATGCGA
AGGCGGCGGCGGTTGCGGTGAGGTCGGAGACACGGCAGGGAACTTTCATT
ACCACCAGCACCACGACAAGCGGCAGCAGCGGCGGCCTCTTGTGTCCCTT
CGCGCGACCTGCATCGCCGCCGTGGCCGTTCAGCGGCTGGTGCGGCTGGC
CGCGTGCCGAGCGTCGCGGAGAGGGGCTGCGAGGGCGGCAGCGGCAGCAA
CCACCGATAGTCATACCGACCTGCCACCACCACCACCACCACCACCAGGC
GGTCGCCCGGGTCTATCGCGACAAGGGGACGTCGGCATCGGTGAGGACAT
TATCTCGCTGGGACCGCGGGGGTCGGGCGGCAGTTCCGGCGGCGGCGTGC
CCATGCTCCTCGATACCCAGGTCGTCTCGCCCGGCTCGATGTCGCTCGCG
TTGACGTCCCTCCTCGCTGACCACAGCAAGGACGGCACCGGTGACCCGAG
TCAGGCAGGTGGCTTGGCATGCCGAAGCGACTGCGGTGGTGGTGGTGGTG
GTGGCAGCAGCGATGGAGAGCGGTGTATGGGGCTCCTGGGCGCGCTGGTC
GTCGTCGACGCCGGAGACGTCTCCTCCGCCGCAACAGGAGAATGGTTGGG
TAGAGGAGGGACGGCGGTGGTGACGGGTGCGGCGAGAGACGCCGCTGGCC
GGACGTCGTTACTGCAGGTGCTTGCGGGAGGGCAGGTCGGCCACTGGCGG
CGAGTTGAGAAGCGAGGCTTGGTGCCCTGGGCTGGTAGAGGCGGTGGTAG
CGGAAGCGATCCCCGCCTGCTGGGTGGTGCGTCTCGAGTGGTGGCTAGCC
GATGCGCGAGGCATCACGGACCAGAGATTTGGAAGGCCTGGCAGGAGCGC
GCCGCGGCCGAAGAGGCGTGTTCGCTCTTGGGGGCCACGCGGAGGGGAAC
GGCCGCGCTCGCGCGACTGGCCGGGGAGGCCGAGCGCCGGTTGCTGGAGA
GCGAGGCTGGCAGGCTGCAGGCGAAGGCAGAGGTGAGTCTATTTCATAGG
TAG
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