mRNA_Ecto-sp13_S_contig16692.4796.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16692.4796.1
Unique NamemRNA_Ecto-sp13_S_contig16692.4796.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16692.4796.1 vs. uniprot
Match: D7G2R1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R1_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 5.130e-63
Identity = 129/183 (70.49%), Postives = 131/183 (71.58%), Query Frame = 1 
Query:    1 MMNGQTKSYLSAVILLLAAAIQQADAFMVAPAGAGKVSAGNKVEARGDVFKLALSPYEEYMASRGGGNSAPAPAXXXPSXXXXXXXXXXXXXGGGAKWQPKADWKSXXXXXXXXXAPAAASPRPPTARAAAPAY----------TPPAPYSPPAXXAPTNSPPAAQTGEKHIGTGGMADTRDP 519
            MMNGQTKSYLSAVILLLAAAIQ ADAFMVAPA AGKVSAGNKVEARGDVFKL LSPYEEYMASRGGG+SAPAPA   PS         XX  GGG+KWQPKADWKS         APAAASPRPPTAR   PAY          TPPAPY    XX        AQ GEKHIGTGGMADTRDP
Sbjct:    1 MMNGQTKSYLSAVILLLAAAIQ-ADAFMVAPAAAGKVSAGNKVEARGDVFKLNLSPYEEYMASRGGGSSAPAPAPAAPSSPARSAVSSXXSSGGGSKWQPKADWKSAKASSKPSYAPAAASPRPPTARXXXPAYAPPAAXXXXYTPPAPYXXXXXXXXXXXXXXAQAGEKHIGTGGMADTRDP 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16692.4796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2R1_ECTSI5.130e-6370.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16692contigEcto-sp13_S_contig16692:176..3850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score204.9
Seed ortholog evalue3e-50
Seed eggNOG ortholog2880.D7G2R1
Model size519
Hectar predicted targeting categorychloroplast
Exons6
EggNOG OGs2D5RA@1,2SZDG@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003170.1
Cds size519
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16692.4796.1prot_Ecto-sp13_S_contig16692.4796.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16692 176..3850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462875.297427-CDS-Ecto-sp13_S_contig16692:175..2411681462875.297427-CDS-Ecto-sp13_S_contig16692:175..241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16692 176..241 +
1681462875.307051-CDS-Ecto-sp13_S_contig16692:620..6801681462875.307051-CDS-Ecto-sp13_S_contig16692:620..680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16692 621..680 +
1681462875.3153303-CDS-Ecto-sp13_S_contig16692:1979..20441681462875.3153303-CDS-Ecto-sp13_S_contig16692:1979..2044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16692 1980..2044 +
1681462875.3234458-CDS-Ecto-sp13_S_contig16692:2643..28291681462875.3234458-CDS-Ecto-sp13_S_contig16692:2643..2829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16692 2644..2829 +
1681462875.3315701-CDS-Ecto-sp13_S_contig16692:3317..34081681462875.3315701-CDS-Ecto-sp13_S_contig16692:3317..3408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16692 3318..3408 +
1681462875.3425922-CDS-Ecto-sp13_S_contig16692:3799..38501681462875.3425922-CDS-Ecto-sp13_S_contig16692:3799..3850Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16692 3800..3850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16692.4796.1

>prot_Ecto-sp13_S_contig16692.4796.1 ID=prot_Ecto-sp13_S_contig16692.4796.1|Name=mRNA_Ecto-sp13_S_contig16692.4796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MMNGQTKSYLSAVILLLAAAIQQADAFMVAPAGAGKVSAGNKVEARGDVF
KLALSPYEEYMASRGGGNSAPAPAPAAPSSPASSPVSSPASSGGGAKWQP
KADWKSAKPSSKPSYAPAAASPRPPTARAAAPAYTPPAPYSPPAAAAPTN
SPPAAQTGEKHIGTGGMADTRDP
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mRNA from alignment at Ecto-sp13_S_contig16692:176..3850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16692.4796.1 ID=mRNA_Ecto-sp13_S_contig16692.4796.1|Name=mRNA_Ecto-sp13_S_contig16692.4796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3675bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16692:176..3850+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACGGGCAAACGAAGAGCTACCTGTCGGCGGTGATCTTGCTGCT
CGCCGCGGCGATCCAGGTTCGTCTGTTCTACATCTCATCTGCATGCCACA
CATGCTACATCCTCCGGCTTGGCCTTGGCGCTCATACTCTCGCTCTCTCC
TGGTGTACTCAGCATCTACCGTCCACATGTTCGTGCCGCGTGCATGACAC
GCGTGTGTGTGGACGAAGGTGGCGCTAAACAACGCAGCTCGTTTTTAGCA
TGCAGGCGCATGCGTGGATGTACCGGTACTGCTGTCGCTGGTTTGCGTTT
TTTTTTCAACACTGCAAGGTGCTCGTGCTCTTAATTGTCGAGTCATTCAC
TCGCTGGAGGACCCTACGTCAGTCAACCCCACAACACGAGTGTACGATGA
AAAACTGCATCCGCTTCTGCCTTCTCGCGTATGGCCGACGGGTAGCAGGC
GGATGCGTTCATGGTGGCACCAGCAGGGGCAGGAAAGGTGTCCGCGGGGA
ACAAGGTGAGGTTTGGCGCAATGAATAATAGCCAATAGGGTTGAAACAAG
AATTTGCGCGAAAGAGAAGTGACGGGCCCCGCAAACAGATGCGTGTGTCC
TGCAGCCGACAGATGTCAGTCGCGAGCACGCGCGTAGGGAAGCTCATAAA
CGCGCACCAGCCCTCGCTCCTTACTTCAGCGCTCCTAACCTAGTGTGATG
CGTACTTTGAAGCCGAAGCGTGCAGGCAGTCTGGCATGTGGCGTGCATGC
GCGGTGCGGCCAAGCGTATAGTTTCGCCGAACGCATGACGTGTGTGTACA
GAAAAAGATGTGTGGAAAAAACATGGGATACCCGTTTCTCACGCCTCAGC
GCAGTAGACCGTGAGCTATAGCAGTACCAGCATGCGTGAACTCACTTCGC
ACTCGTTGGGTGTACGTACGCCGTAGTAAACGTACGGGTACCAGCCCAGG
GTCCGCGACACGAATCCACACACGCACTTTGGCGTTTTTGTCTTCTGTTT
TTCTTTCGGCCTCGTACGCATCCGTACCATACGCAACATTTTTTTTTCTT
GCAACACATGATGGCTTGCACGTAGTACAACAACCCTAACGATGCCCACG
GGAGCTAAACGTGCAGCGAGATGACTGCCACACACCTCTCAGCAGTCCCC
GAGTTTTTCACAAACCAGCGCCGTCGCGACTCGTTCATCGTCCATGTACA
ACGAGAAAGGAAATCCACATGTGGCCGTTGGTTGCATAGCTGCTGTTTTT
GTGGGGTCACGGCAATGCGAGTAGATGCCGATCTATTGCAGCTGCTTGCA
GTTCGGCTGCGTGCAGTCTTGCACACCTCTTTCAATGACGCTAGCACCAT
GCTTATCATCTCTCCTCCAACACGTCGTTGGTTGGGTCATCATGCGCATG
CTTGGTTCCTGCGTTGAAGTCGGCTAATTACATCGATGGTTTCCTAGACG
GGCGGCACAAGGTCTTCGATGTGTCGACGTATCTGTATGTGCAACATGTT
CGTTTGCCTTCAGCCACGAATGACGTCATATTCATAGCATGAGTGCATGC
CTTCCGGCTGTTGCCCAATGTTTTTGGTGGTGCTCTGCATCAACACACGG
TTGTCATGATACCCTTTACGACACGGGCAAGGTTATCGCTCAGCTTTCGT
GCGGGTTTGTACACAGGAGTGTAAGGCCTCCCTACATCATGGGTGCCAGC
CACGTTTCCAGCAGCGACCTGCATTTCGGACCTGCTCGGTTGTAAATGTA
TCTCAAACTCAAAACTCTTTTCCCTCCATACATGTTGTCGTCCGCGTGTC
GCAGGTAGAAGCTCGCGGGGACGTGTTCAAGCTTGCCCTTTCCCCGTACG
AGGAGTACATGGCGTCGAGGTAAGTTGGTTGCGCTTGTTTTTTCATCTTT
CGGGAAGTTTTATGTTGACGGGGCATTTTTCATCCATCATATCCCAGCGG
ATGCATAGTAAGATAAAAACAGTTGTTATTTTGTGGTCTGCTGTGTGTAG
TGCTGGAGTCGTGTCTTCCAGCTGTTTGAGACAGGCTACCGTCTGTAGCC
AGTAGTACAGACTCGGAGGACAAAGGATTGGGCCGGCAGCGACCTCTGTC
GTATTTGGCAGTTGCACGGGATGACCCAGTAGTAAATATTTCGAGGATAC
AGGATTGGGCCGGCAGCGACCTCTTTTGCATTTGGCAGCTGCACGGGATG
ACCCATTAGTACATTCGCAGCTCAACGGCGGACGCGCGTTTTAACGTCAA
CCTGCGCACACCAGTTTTGTCCCACAACGTTCCTCAGCTACGCACTCTTT
TGTCTCGAAACATTGGAAAAGAATACCGGGGTACCCCTGACCGTACGGGC
TGTAGAGCGCCAACCACAGCACCGCTGCGGGGCTTTTCTTACACCCTCGG
GATTCCCACCCATCCACCTTCGACCGTGTGTTGGATGTCGATCCCCCGTT
CTCTCTCGATTTACACAGGGGCGGAGGCAACAGCGCCCCTGCGCCCGCCC
CCGCAGCACCGTCGAGCCCCGCCAGCTCCCCCGTTTCGTCGCCCGCGTCC
TCCGGCGGCGGGGCCAAGTGGCAGCCCAAGGCTGACTGGAAGTCGGCCAA
GCCTTCTTCCAAGCCCTCTTACGCGCCCGCTGCCGCCTCCCCCCGGCCGC
CCACGTGAGTAGGATGCAAGCTGCACGAAGTCGCGTTGGTTCTTTCTGTC
TACGGTCGCTTCTTTTTTGGAGAAGAACGAGTAGTCCAGGTTTGACCGTT
GAAATGATGCTGTCGGCTGCGTGTGCAAGTAGGGTAGAAGGCATGCACCA
CCGCCCGTGGTTTTGAGCTTCTTTCAAGTGATGAAAGCCTCGCCCGTTTA
GGAGGCCCATTGTTAGACTCACCCACTGCCAGCACAAGTTGCATAAGTGG
GCCCGTGTGTGTGACATGTGTCGTGGCCTGTGTCGCTGGAAGACAAGGAT
ATGGATGAACCTCTTGCCTCCTTTGCGTCAGTCCACACTTCTCGCCTAGC
CTGCCTTCTCGTCCGACTGCTCGCATCTTCCGGAGTCGATCCCTGACCTT
GGTGTGCTCTTCTTCGCTTTCCGTCTTTTGCTGCCTTGCCTTCGTTGCCG
TGCTTCGTTCTCCGGCGTCACCGTCTGCATTCCGCACGACAGCGCGCGCG
CCGCCGCCCCGGCGTACACCCCCCCGGCCCCGTACAGCCCCCCCGCGGCG
GCTGCCCCGACCAACAGCCCCCCAGCGGCTCAGGTATGTCGTGCGCAAGC
GTCGGAATTTTGTTGACGGGATGGAACAACGTTTGCAGTGCTTGGCTTTG
TGTGGGAAGGAATATCAACATTGTACCTTGCGGGTGCCCCTACTCCCAAG
AGTCGCTCCTGTGTTGTGGTAAGAGGCAGCGGTGCTTAGGAACGGTAGAA
ACAAAACAATTTTTGAAGACCCTTCTTGTCGACAGCGCACGAACGCTTTC
CCGTAGAAACGGTCCACAACGTTGATTTTGACGGAGTTATCTTCAGCCAC
GGAACAAAAACACGAAACAAAACACGTGAGCTGATTGTTGCCTCTTCATT
CGTGGTTTATGTCGTGTTCGGGCAGTCCAATCTCATTCCTCGTCCCCCTT
CCCTTCCCTGCTTTTCGTTTGAAGACCGGCGAGAAGCACATCGGCACCGG
CGGCATGGCAGACACCCGCGACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16692:176..3850+

>mRNA_Ecto-sp13_S_contig16692.4796.1 ID=mRNA_Ecto-sp13_S_contig16692.4796.1|Name=mRNA_Ecto-sp13_S_contig16692.4796.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16692:176..3850+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGAACGGGCAAACGAAGAGCTACCTGTCGGCGGTGATCTTGCTGCT
CGCCGCGGCGATCCAGCAGGCGGATGCGTTCATGGTGGCACCAGCAGGGG
CAGGAAAGGTGTCCGCGGGGAACAAGGTAGAAGCTCGCGGGGACGTGTTC
AAGCTTGCCCTTTCCCCGTACGAGGAGTACATGGCGTCGAGGGGCGGAGG
CAACAGCGCCCCTGCGCCCGCCCCCGCAGCACCGTCGAGCCCCGCCAGCT
CCCCCGTTTCGTCGCCCGCGTCCTCCGGCGGCGGGGCCAAGTGGCAGCCC
AAGGCTGACTGGAAGTCGGCCAAGCCTTCTTCCAAGCCCTCTTACGCGCC
CGCTGCCGCCTCCCCCCGGCCGCCCACCGCGCGCGCCGCCGCCCCGGCGT
ACACCCCCCCGGCCCCGTACAGCCCCCCCGCGGCGGCTGCCCCGACCAAC
AGCCCCCCAGCGGCTCAGACCGGCGAGAAGCACATCGGCACCGGCGGCAT
GGCAGACACCCGCGACCCC
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